Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-155 552.0 276 100.0
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 2.6e-155 552.0 276 100.0
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 3.0e-135 485.3 275 87.3
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 5.7e-134 481.1 274 86.5
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 3.7e-133 478.4 274 86.9
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 2.7e-131 472.2 274 84.7
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.7e-130 469.5 275 83.6
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 1.7e-130 469.5 274 83.9
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 2.9e-130 468.8 274 84.3
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 3.8e-130 468.4 274 83.9
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 1.9e-129 466.1 272 83.8
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 3.2e-129 465.3 274 83.6
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 5.5e-129 464.5 272 84.2
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 7.2e-129 464.2 274 82.8
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.2e-128 463.4 275 81.8
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 1.6e-128 463.0 274 82.8
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 1.0e-127 460.3 275 82.5
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 1.0e-127 460.3 270 83.0
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 1.4e-127 459.9 273 81.0
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 1.8e-127 459.5 270 81.9
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 2.3e-127 459.1 272 81.2
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 5.2e-127 458.0 272 82.4
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 6.8e-127 457.6 270 82.2
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 8.8e-127 457.2 275 79.6
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 8.8e-127 457.2 273 82.1
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 8.8e-127 457.2 271 81.5
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 8.8e-127 457.2 272 82.0
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 8.8e-127 457.2 272 82.0
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 2.6e-126 455.7 272 81.6
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 3.4e-126 455.3 272 81.6
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 3.4e-126 455.3 270 82.2
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 3.4e-126 455.3 270 82.2
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 4.4e-126 454.9 272 81.2
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 7.5e-126 454.1 274 80.3
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 9.8e-126 453.8 272 82.0
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 1.3e-125 453.4 272 81.6
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 1.3e-125 453.4 270 81.9
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.3e-125 453.4 275 78.9
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 2.8e-125 452.2 270 81.5
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 2.8e-125 452.2 272 80.9
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 3.7e-125 451.8 272 81.2
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 3.7e-125 451.8 272 80.9
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 3.7e-125 451.8 274 80.7
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 8.3e-125 450.7 270 81.5
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 8.3e-125 450.7 270 79.6
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.4e-124 449.9 273 79.9
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.4e-124 449.9 272 80.5
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 4.1e-124 448.4 273 78.8
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 9.1e-124 447.2 270 81.1
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 2.0e-123 446.0 270 79.3
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 4.5e-123 444.9 270 80.7
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 7.7e-123 444.1 270 79.3
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 1.3e-122 443.4 270 79.3
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.7e-122 443.0 270 78.5
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 1.7e-122 443.0 270 78.5
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 2.3e-122 442.6 270 78.9
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 2.9e-122 442.2 270 78.5
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 3.8e-122 441.8 270 79.3
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-121 440.3 270 79.3
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 1.1e-121 440.3 262 81.3
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.5e-121 439.9 270 78.5
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.9e-121 439.5 270 79.3
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 2.5e-121 439.1 270 78.1
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 9.5e-121 437.2 304 73.0
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 9.5e-121 437.2 272 76.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.2e-120 436.8 272 78.3
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 2.1e-120 436.0 271 79.7
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.8e-120 435.6 270 78.5
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 6.1e-120 434.5 272 77.6
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 6.1e-120 434.5 271 79.3
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 8.0e-120 434.1 274 77.4
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 8.0e-120 434.1 271 78.6
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.0e-119 433.7 270 78.1
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 1.4e-119 433.3 271 79.3
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.4e-119 433.3 271 78.6
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.8e-119 433.0 271 78.6
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 3.0e-119 432.2 271 77.9
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 5.2e-119 431.4 271 78.2
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 5.2e-119 431.4 271 77.9
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 8.9e-119 430.6 271 77.5
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 8.9e-119 430.6 272 76.8
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.5e-118 429.9 257 82.5
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 4.4e-118 428.3 271 77.1
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 7.5e-118 427.6 271 77.1
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.3e-117 426.8 270 76.7
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.7e-117 426.4 265 77.7
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 4.9e-117 424.9 300 70.7
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 4.9e-117 424.9 306 70.6
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.9e-117 424.9 251 87.3
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 6.3e-117 424.5 272 77.6
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 2.4e-116 422.5 272 74.3
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 7.8e-115 417.5 272 72.4
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 8.6e-114 414.1 273 74.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.2e-112 410.2 273 75.1
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.3e-111 406.0 285 71.2
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 4.0e-111 405.2 383 58.2
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 5.8e-110 401.4 246 78.5
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 7.5e-110 401.0 272 73.5
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 7.5e-110 401.0 270 68.9
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 1.4e-108 396.7 270 69.3
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 3.2e-108 395.6 270 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.6e-107 393.3 270 67.4
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 1.1e-105 387.1 226 85.4
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 1.2e-104 383.6 227 85.5
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 4.7e-104 381.7 272 70.6
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.5e-102 376.7 243 75.7
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 9.8e-102 374.0 242 75.6
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 4.1e-100 368.6 271 64.9
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 3.5e-99 365.5 270 70.0
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 3.3e-97 359.0 267 65.2
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 2.9e-93 345.9 273 63.4
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 1.1e-92 344.0 196 86.7
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.6e-88 330.1 220 75.5
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 8.9e-87 324.3 270 57.0
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 9.9e-86 320.9 290 55.5
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 4.6e-83 312.0 274 60.2
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 3.0e-82 309.3 274 60.2
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.1e-81 307.4 274 59.9
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 3.3e-81 305.8 180 79.4
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 3.8e-77 292.4 243 63.8
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 1.6e-75 287.0 275 55.6
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 7.3e-73 278.1 276 49.3
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 9.6e-73 277.7 168 81.0
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 2.9e-69 266.2 274 52.2
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 4.2e-68 262.3 155 78.1
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 2.5e-65 253.1 152 83.6
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 8.1e-64 248.1 165 74.5
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.2e-60 236.1 207 61.8
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.6e-51 205.7 273 49.1
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 2.5e-49 199.9 275 45.1
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 2.4e-47 193.4 156 63.5
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 5.9e-46 188.7 272 43.0
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 7.9e-43 178.3 140 67.9
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 5.5e-36 155.6 159 56.6
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 2.7e-35 153.3 94 78.7
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 5.3e-31 139.0 260 38.8
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 5.0e-29 132.5 268 36.6
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 1.9e-28 130.6 92 70.7
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 5.5e-28 129.0 185 42.7
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 3.9e-26 122.9 135 49.6
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 3.9e-26 122.9 79 72.2
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 3.3e-25 119.8 135 48.9
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 7.4e-25 118.6 260 35.0
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 5.5e-20 102.4 73 67.1
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.0e-18 98.2 75 62.7
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 7.0e-15 85.5 104 48.1
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 4.2e-12 76.3 45 77.8
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 3.4e-09 66.6 49 63.3
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 3.5e-06 56.6 45 66.7


User provided reference genes

Program Settings