Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007380 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 3.4e-78 295.0 161 100.0
CSS0002161 Camellia sinensis var. sinensis HOM05D005115 ORTHO05D005703 7.5e-78 293.9 161 99.4
Dinv37526 Davidia involucrata HOM05D005115 ORTHO05D005703 5.3e-47 191.4 119 87.4
Hma1.2p1_0440F.1_g153350 Hydrangea macrophylla HOM05D005115 ORTHO05D005703 1.5e-46 189.9 119 88.2
Dinv38826 Davidia involucrata HOM05D007126 ORTHO05D008974 3.4e-46 188.7 119 85.7
Solyc08g008350.3 Solanum lycopersicum HOM05D005115 ORTHO05D005703 7.9e-43 177.6 119 79.8
vmacro11350 Vaccinium macrocarpon HOM05D005115 ORTHO05D005703 1.3e-42 176.8 117 81.2
Sopen08g004230 Solanum pennellii HOM05D005115 ORTHO05D005703 5.1e-42 174.9 120 78.3
PGSC0003DMG400005793 Solanum tuberosum HOM05D005115 ORTHO05D005703 5.1e-42 174.9 120 79.2
CAN.G792.37 Capsicum annuum HOM05D005115 ORTHO05D005703 1.1e-41 173.7 120 78.3
Peaxi162Scf00102g01844 Petunia axillaris HOM05D005115 ORTHO05D005703 1.9e-41 172.9 119 77.3
Rhsim02G0244500 Rhododendron simsii HOM05D005115 ORTHO05D005703 9.6e-41 170.6 122 77.0
Cc08_g16140 Coffea canephora HOM05D005115 ORTHO05D005703 8.2e-40 167.5 119 74.8
SalBow6G1704 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-39 166.8 120 75.0
SalBow8G0540 Salvia bowleyana HOM05D005115 ORTHO05D005703 1.4e-39 166.8 120 75.0
TAR375G0477 Trochodendron aralioides HOM05D005115 ORTHO05D005703 1.4e-39 166.8 120 79.2
MSTRG.25681 Avicennia marina HOM05D005115 ORTHO05D005703 2.4e-39 166.0 120 77.5
TAR375G0257 Trochodendron aralioides HOM05D005115 ORTHO05D005703 5.3e-39 164.9 120 79.2
GSVIVG01019540001 Vitis vinifera HOM05D005115 ORTHO05D005703 6.9e-39 164.5 117 76.9
Oeu055028.2 Olea europaea HOM05D005115 ORTHO05D005703 9.0e-39 164.1 119 72.3
Nitab4.5_0002231g0060 Nicotiana tabacum HOM05D005115 ORTHO05D005703 4.9e-37 158.3 147 61.9
TAR636G3146 Trochodendron aralioides HOM05D005115 ORTHO05D005703 8.4e-37 157.5 120 72.5
Migut.A00633 Erythranthe guttata HOM05D005115 ORTHO05D005703 1.1e-36 157.1 123 74.8
Actinidia22166 Actinidia chinensis HOM05D005115 ORTHO05D005703 1.4e-36 156.8 103 82.5
Nitab4.5_0007367g0090 Nicotiana tabacum HOM05D005115 ORTHO05D005703 1.4e-36 156.8 146 62.3
Duzib205G0660 Durio zibethinus HOM05D005115 ORTHO05D005703 1.9e-36 156.4 120 73.3
Duzib084G1297 Durio zibethinus HOM05D005115 ORTHO05D005703 2.5e-36 156.0 120 74.2
Cfa011998 Carpinus fangiana HOM05D005115 ORTHO05D005703 3.2e-36 155.6 120 72.5
Gohir.D09G185000 Gossypium hirsutum HOM05D005115 ORTHO05D005703 4.2e-36 155.2 120 70.8
Gorai.006G207500 Gossypium raimondii HOM05D005115 ORTHO05D005703 4.2e-36 155.2 120 70.8
Thecc.03G298900 Theobroma cacao HOM05D005115 ORTHO05D005703 9.3e-36 154.1 119 72.3
Gohir.A09G190300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 2.7e-35 152.5 120 70.8
Prupe.5G120800 Prunus persica HOM05D005115 ORTHO05D005703 2.7e-35 152.5 112 75.9
Haze_09072 Corylus avellana HOM05D005115 ORTHO05D005703 6.0e-35 151.4 118 72.0
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 1.0e-34 150.6 122 72.1
PGR042G1877 Punica granatum HOM05D005115 ORTHO05D005703 1.8e-34 149.8 119 68.9
Sc22g0004980 Simmondsia chinensis HOM05D005115 ORTHO05D005703 3.0e-34 149.1 119 68.9
CiPaw.11G120600 Carya illinoinensis HOM05D005115 ORTHO05D005703 3.9e-34 148.7 120 70.8
Duzib068G0330 Durio zibethinus HOM05D005115 ORTHO05D005703 5.1e-34 148.3 120 70.8
Aqoxy7G00093 Aquilegia oxysepala HOM05D005115 ORTHO05D005703 8.7e-34 147.5 111 73.0
CsaV3_4G006640 Cucumis sativus L. HOM05D005115 ORTHO05D005703 8.7e-34 147.5 123 69.9
FAN18G1353 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.7e-34 147.5 110 71.8
unitig_0.g2839 Utricularia gibba HOM05D005115 ORTHO05D005703 1.1e-33 147.1 119 68.1
FvH4_5g04680 Fragaria vesca HOM05D005115 ORTHO05D005703 2.5e-33 146.0 110 70.9
Phvul.002G164100 Phaseolus vulgaris HOM05D005115 ORTHO05D005703 4.3e-33 145.2 119 67.2
PGR031G1480 Punica granatum HOM05D005115 ORTHO05D005703 9.7e-33 144.1 119 65.5
arahy.Tifrunner.gnm1.ann1.V4I9JE Arachis hypogaea HOM05D005115 ORTHO05D005703 1.6e-32 143.3 119 68.9
Glyma.01G225300 Glycine max HOM05D005115 ORTHO05D005703 1.6e-32 143.3 120 69.2
Glyma.11G017800 Glycine max HOM05D005115 ORTHO05D005703 2.2e-32 142.9 119 68.1
AUR62010847 Chenopodium quinoa HOM05D000034 ORTHO05D005703 4.8e-32 141.7 119 65.5
COL.COLO4_10710 Corchorus olitorius HOM05D005115 ORTHO05D005703 6.3e-32 141.4 116 68.1
FAN13G0546 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.2e-32 141.0 110 69.1
FAN13G3196 Fragaria x ananassa HOM05D005115 ORTHO05D005703 8.2e-32 141.0 110 69.1
VMungo1215G1874 Vigna mungo HOM05D005115 ORTHO05D005703 8.2e-32 141.0 119 67.2
ClCG07G011580 Citrullus lanatus HOM05D005115 ORTHO05D005703 1.1e-31 140.6 120 69.2
AUR62019846 Chenopodium quinoa HOM05D005115 ORTHO05D005703 3.1e-31 139.0 119 63.9
Gohir.A11G025300 Gossypium hirsutum HOM05D005115 ORTHO05D005703 3.1e-31 139.0 120 68.3
Atru.chr9.1972 Acer truncatum HOM05D005115 ORTHO05D005703 4.1e-31 138.7 112 71.4
Atru.chr9.1986 Acer truncatum HOM05D005115 ORTHO05D005703 4.1e-31 138.7 112 71.4
CiPaw.12G082200 Carya illinoinensis HOM05D005115 ORTHO05D005703 4.1e-31 138.7 120 66.7
Medtr8g099425 Medicago truncatula HOM05D005115 ORTHO05D005703 4.1e-31 138.7 121 66.9
CANSAT21G0870 Cannabis sativa HOM05D005115 ORTHO05D005703 6.9e-31 137.9 115 67.0
Gohir.D11G024900 Gossypium hirsutum HOM05D005115 ORTHO05D005703 6.9e-31 137.9 120 67.5
Psat7g026000 Pisum sativum HOM05D005115 ORTHO05D005703 6.9e-31 137.9 120 65.8
TWI81G0084 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 6.9e-31 137.9 111 69.4
ECA240G1127 Erigeron canadensis HOM05D005115 ORTHO05D005703 9.0e-31 137.5 121 60.3
arahy.Tifrunner.gnm1.ann1.M14U5A Arachis hypogaea HOM05D005115 ORTHO05D005703 1.5e-30 136.7 119 66.4
Gorai.007G026700 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.5e-30 136.7 120 66.7
HanXRQChr13g0415351 Helianthus annuus HOM05D005115 ORTHO05D005703 2.0e-30 136.3 98 75.5
Eucgr.D01748 Eucalyptus grandis HOM05D005115 ORTHO05D005703 4.5e-30 135.2 119 66.4
Manes.02G009400 Manihot esculenta HOM05D005115 ORTHO05D005703 7.6e-30 134.4 119 63.9
LjContig00312_ERROPOS870357g0004531 Lotus japonicus HOM05D005115 ORTHO05D005703 1.0e-29 134.0 119 64.7
Hund11387 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.0e-29 134.0 111 68.5
Hund14216 Selenicereus undatus HOM05D005115 ORTHO05D005703 1.3e-29 133.7 121 64.5
Ca_17482_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.7e-29 133.3 119 63.9
Ca_17506_v3 Cicer arietinum L. HOM05D005115 ORTHO05D005703 1.7e-29 133.3 119 63.9
MBI06_g08472_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 1.7e-29 133.3 125 65.6
TPR.G3414 Trifolium pratense HOM05D005115 ORTHO05D005703 5.0e-29 131.7 119 65.5
EL10Ac5g12921 Beta vulgaris HOM05D005115 ORTHO05D005703 6.5e-29 131.3 121 64.5
ECA240G3401 Erigeron canadensis HOM05D000003 ORTHO05D000004 6.5e-29 131.3 113 63.7
Cpa.g.sc79.29 Carica papaya HOM05D005115 ORTHO05D005703 1.1e-28 130.6 130 62.3
TWI15G1136 Tripterygium wilfordii HOM05D005115 ORTHO05D005703 1.1e-28 130.6 120 63.3
Lsat_1_v5_gn_6_83921 Lactuca sativa HOM05D005115 ORTHO05D005703 3.2e-28 129.0 113 64.6
HanXRQChr03g0083441 Helianthus annuus HOM05D005115 ORTHO05D005703 9.3e-28 127.5 101 68.3
Sabra01G0067300 Salix brachista HOM05D005115 ORTHO05D005703 1.2e-27 127.1 119 61.3
RcHm_v2.0_Chr7g0194701 Rosa chinensis HOM05D005115 ORTHO05D005703 2.1e-27 126.3 94 72.3
Sed0016945 Sechium edule HOM05D005115 ORTHO05D005703 2.1e-27 126.3 120 62.5
MD06G1108200 Malus domestica HOM05D005115 ORTHO05D005703 6.1e-27 124.8 94 73.4
Potri.003G140700 Populus trichocarpa HOM05D005115 ORTHO05D005703 6.1e-27 124.8 119 59.7
Carub.0006s2972 Capsella rubella HOM05D005115 ORTHO05D005703 1.8e-26 123.2 118 58.5
CDE04G3646 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 5.1e-26 121.7 116 61.2
HPP92_002918 Vanilla planifolia HOM05D005115 ORTHO05D005703 6.7e-26 121.3 117 57.3
Potri.001G090900 Populus trichocarpa HOM05D005115 ORTHO05D005703 8.8e-26 120.9 119 60.5
Aa31LG9G11140 Aethionema arabicum HOM05D005115 ORTHO05D005703 1.5e-25 120.2 118 58.5
AT4G10970 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 2.5e-25 119.4 118 57.6
Thhalv10028955m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 2.5e-25 119.4 119 58.0
BcaC01g04648 Brassica carinata HOM05D005115 ORTHO05D005703 4.3e-25 118.6 120 58.3
BolC3t15841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.3e-25 118.6 120 58.3
MBI07_g07104_MAGBIO Magnolia biondii HOM05D005115 ORTHO05D005703 4.3e-25 118.6 117 59.8
Sp6g06500 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.3e-24 117.1 119 58.8
MELO3C016298.2 Cucumis melo HOM05D005115 ORTHO05D005703 8.2e-24 114.4 136 54.4
THA.LOC104815118 Tarenaya hassleriana HOM05D005115 ORTHO05D005703 8.2e-24 114.4 124 56.5
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 1.1e-23 114.0 115 57.4
AL6G45070 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.4e-23 113.6 121 57.0
Sed0001802 Sechium edule HOM05D005115 ORTHO05D005703 1.8e-23 113.2 118 61.0
C03p35310 Brassica napus HOM05D005115 ORTHO05D005703 2.4e-23 112.8 118 56.8
PSO384G2123 Papaver somniferum HOM05D005115 ORTHO05D005703 5.3e-23 111.7 125 60.8
Sabra03G0101600 Salix brachista HOM05D000906 ORTHO05D000713 9.1e-23 110.9 118 55.9
Lalb_Chr05g0211561 Lupinus albus HOM05D005115 ORTHO05D005703 1.2e-22 110.5 96 61.5
PSO135G0387 Papaver somniferum HOM05D005115 ORTHO05D005703 1.2e-22 110.5 124 60.5
BcaB01g02726 Brassica carinata HOM05D005115 ORTHO05D005703 2.0e-22 109.8 119 54.6
CARHR255630 Cardamine hirsuta HOM05D005115 ORTHO05D005703 2.0e-22 109.8 124 54.8
SHI06967 Sapria himalayana HOM05D005115 ORTHO05D005703 6.5e-21 104.8 125 48.8
Os08g0374200 Oryza sativa ssp. japonica HOM05D005115 ORTHO05D005703 1.4e-20 103.6 121 54.5
Gohir.D12G237999 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-20 103.2 108 57.4
Gohir.D12G238133 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.9e-20 103.2 108 57.4
Gorai.008G254900 Gossypium raimondii HOM05D005115 ORTHO05D005703 1.9e-20 103.2 108 57.4
CDE03G0211 Ceratophyllum demersum HOM05D005115 ORTHO05D005703 9.4e-20 100.9 102 58.8
Zm00001eb178470 Zea mays HOM05D005115 ORTHO05D005703 3.6e-19 99.0 107 55.1
Zm00001eb042700 Zea mays HOM05D005115 ORTHO05D005703 1.4e-18 97.1 107 54.2
AT4G23910 Arabidopsis thaliana HOM05D005115 ORTHO05D005703 1.8e-18 96.7 121 52.1
Sp7g21880 Schrenkiella parvula HOM05D005115 ORTHO05D005703 1.8e-18 96.7 121 51.2
ATR0602G161 Amborella trichopoda HOM05D005115 ORTHO05D005703 8.8e-18 94.4 125 51.2
A03p29200 Brassica napus HOM05D005115 ORTHO05D005703 2.0e-17 93.2 142 46.5
Thhalv10026287m.g Eutrema salsugineum HOM05D005115 ORTHO05D005703 9.7e-17 90.9 123 50.4
arahy.Tifrunner.gnm1.ann1.ULQ1VN Arachis hypogaea HOM05D005115 ORTHO05D005703 1.3e-16 90.5 69 69.6
C01p19150 Brassica napus HOM05D005115 ORTHO05D005703 1.3e-16 90.5 121 49.6
A01p15220 Brassica napus HOM05D005115 ORTHO05D005703 3.7e-16 89.0 121 47.9
BolC1t01841H Brassica oleracea HOM05D005115 ORTHO05D005703 4.8e-16 88.6 121 48.8
BcaC09g50931 Brassica carinata HOM05D005115 ORTHO05D005703 1.1e-15 87.4 121 48.8
Carub.0007s1718 Capsella rubella HOM05D005115 ORTHO05D005703 1.1e-15 87.4 117 48.7
AL7G29420 Arabidopsis lyrata HOM05D005115 ORTHO05D005703 1.4e-15 87.0 113 53.1
CARHR231320 Cardamine hirsuta HOM05D005115 ORTHO05D005703 3.1e-15 85.9 122 50.0
BraA01t01460Z Brassica rapa HOM05D005115 ORTHO05D005703 4.1e-15 85.5 119 47.1
BcaNung01098 Brassica carinata HOM05D005115 ORTHO05D005703 2.0e-14 83.2 125 42.4
SEGI_32593 Sequoiadendron giganteum HOM05D005115 ORTHO05D005703 2.9e-13 79.3 112 52.7
DCAR_029907 Daucus carota HOM05D005115 ORTHO05D005703 3.8e-13 79.0 73 63.0
Lsat_1_v5_gn_1_118201 Lactuca sativa HOM05D009751 ORTHO05D005703 3.6e-11 72.4 64 59.4
FAN04G1053 Fragaria x ananassa HOM05D005115 ORTHO05D005703 1.0e-10 70.9 39 87.2
Lsat_1_v5_gn_8_68541 Lactuca sativa HOM05D005115 ORTHO05D018183 2.3e-10 69.7 62 59.7
Gohir.A12G236850 Gossypium hirsutum HOM05D005115 ORTHO05D005703 1.1e-09 67.4 108 49.1
AagrBONN_evm.TU.Sc2ySwM_344.5012 Anthoceros agrestis HOM05D028980 ORTHO05D026613 2.0e-06 56.6 92 44.6


User provided reference genes

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