Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007364 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 3.3e-39 164.5 78 100.0
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 7.0e-37 156.8 78 96.2
CSS0048807 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 1.9e-34 148.7 78 91.0
CSS0008166 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.4e-23 110.9 78 71.8
Rhsim06G0114400 Rhododendron simsii HOM05D007628 ORTHO05D007342 9.8e-23 109.8 77 64.9
Rhsim06G0114500 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.1e-21 106.3 77 64.9
Actinidia25283 Actinidia chinensis HOM05D007628 ORTHO05D007342 4.2e-18 94.4 78 61.5
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 3.6e-17 91.3 77 55.8
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 3.4e-15 84.7 73 54.8
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 3.4e-15 84.7 79 50.6
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.7e-14 82.4 72 50.0
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 4.9e-14 80.9 73 58.9
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 6.3e-14 80.5 73 57.5
Cc10_g10200 Coffea canephora HOM05D007628 ORTHO05D007342 8.3e-14 80.1 77 45.5
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 8.3e-14 80.1 77 51.9
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 8.3e-14 80.1 77 51.9
arahy.Tifrunner.gnm1.ann1.I9AMSX Arachis hypogaea HOM05D007628 ORTHO05D007342 1.1e-13 79.7 73 52.1
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 1.4e-13 79.3 74 51.4
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 1.4e-13 79.3 73 57.5
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.4e-13 79.3 70 50.0
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 1.4e-13 79.3 74 47.3
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 1.4e-13 79.3 73 49.3
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 1.8e-13 79.0 80 53.8
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 1.8e-13 79.0 80 53.8
Cfa012934 Carpinus fangiana HOM05D007628 ORTHO05D007342 2.4e-13 78.6 79 48.1
CSS0046525 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 4.1e-13 77.8 51 62.7
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 4.1e-13 77.8 72 52.8
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.0e-13 77.0 77 53.2
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 9.2e-13 76.6 73 54.8
QL02p025803 Quercus lobata HOM05D007628 ORTHO05D007342 9.2e-13 76.6 68 50.0
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 9.2e-13 76.6 73 52.1
GSVIVG01023245001 Vitis vinifera HOM05D007628 ORTHO05D007342 9.2e-13 76.6 77 48.1
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.2e-12 76.3 75 56.0
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 1.2e-12 76.3 73 43.8
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-12 76.3 73 56.2
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 2.0e-12 75.5 69 53.6
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 4.6e-12 74.3 74 51.4
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 4.6e-12 74.3 77 46.8
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 4.6e-12 74.3 77 46.8
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 5.9e-12 73.9 73 47.9
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 1.0e-11 73.2 62 59.7
THA.LOC104800123 Tarenaya hassleriana HOM05D007628 ORTHO05D007342 1.0e-11 73.2 77 48.1
Potri.019G080600 Populus trichocarpa HOM05D007628 ORTHO05D007342 1.3e-11 72.8 68 51.5
Rhsim11G0055100 Rhododendron simsii HOM05D007628 ORTHO05D007342 1.3e-11 72.8 79 46.8
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 1.7e-11 72.4 80 51.2
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.7e-11 72.4 80 51.2
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 1.7e-11 72.4 72 47.2
Cc10_g10240 Coffea canephora HOM05D007628 ORTHO05D007342 2.3e-11 72.0 73 49.3
DCAR_001460 Daucus carota HOM05D001035 ORTHO05D001045 2.9e-11 71.6 49 61.2
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 2.9e-11 71.6 58 56.9
Zm00001eb127310 Zea mays HOM05D007628 ORTHO05D007342 2.9e-11 71.6 78 46.2
Manes.18G104000 Manihot esculenta HOM05D007628 ORTHO05D007342 3.9e-11 71.2 47 63.8
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 5.0e-11 70.9 76 50.0
Carub.0002s1884 Capsella rubella HOM05D007628 ORTHO05D007342 8.6e-11 70.1 80 45.0
Haze_21294 Corylus avellana HOM05D007628 ORTHO05D007342 8.6e-11 70.1 78 47.4
Cc10_g10180 Coffea canephora HOM05D013878 ORTHO05D007342 1.1e-10 69.7 77 41.6
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 1.1e-10 69.7 75 48.0
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 1.1e-10 69.7 72 45.8
CiPaw.08G002000 Carya illinoinensis HOM05D007628 ORTHO05D007342 1.5e-10 69.3 78 46.2
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.9e-10 68.9 65 53.8
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 1.9e-10 68.9 77 53.2
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 2.5e-10 68.6 73 42.5
BcaB05g24703 Brassica carinata HOM05D007628 ORTHO05D007342 3.3e-10 68.2 72 44.4
CARHR064880 Cardamine hirsuta HOM05D007628 ORTHO05D007342 3.3e-10 68.2 72 44.4
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.3e-10 67.8 70 48.6
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.3e-10 67.8 70 48.6
Sabra19G0091700 Salix brachista HOM05D003906 ORTHO05D004776 5.6e-10 67.4 68 48.5
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 5.6e-10 67.4 79 46.8
AT1G72060 Arabidopsis thaliana HOM05D007628 ORTHO05D007342 7.3e-10 67.0 69 43.5
Duzib177G0741 Durio zibethinus HOM05D007628 ORTHO05D007342 7.3e-10 67.0 75 44.0
Solyc03g031895.1 Solanum lycopersicum HOM05D008200 ORTHO05D007342 7.3e-10 67.0 79 46.8
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 7.3e-10 67.0 80 46.2
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.2e-09 66.2 72 52.8
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.6e-09 65.9 73 45.2
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.1e-09 65.5 50 56.0
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.1e-09 65.5 82 42.7
Peaxi162Scf00391g00730 Petunia axillaris HOM05D008200 ORTHO05D007342 2.8e-09 65.1 77 44.2
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 2.8e-09 65.1 70 41.4
Aa31LG4G8570 Aethionema arabicum HOM05D007628 ORTHO05D007342 3.6e-09 64.7 69 42.0
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.6e-09 64.7 79 45.6
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 6.2e-09 63.9 76 39.5
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 6.2e-09 63.9 73 43.8
BcaC03g15330 Brassica carinata HOM05D007628 ORTHO05D007342 1.4e-08 62.8 72 41.7
C02p29350 Brassica napus HOM05D007628 ORTHO05D007342 1.4e-08 62.8 72 41.7
BolC2t08986H Brassica oleracea HOM05D007628 ORTHO05D007342 1.4e-08 62.8 72 41.7
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 1.4e-08 62.8 80 46.2
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 1.4e-08 62.8 68 52.9
BraA02t06812Z Brassica rapa HOM05D007628 ORTHO05D007342 1.8e-08 62.4 72 41.7
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.8e-08 62.4 49 59.2
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 2.3e-08 62.0 80 43.8
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.1e-08 61.6 71 40.8
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 5.2e-08 60.8 72 43.1
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 1.2e-07 59.7 74 37.8
Ah.06g183420 Amaranthus hybridus HOM05D007628 ORTHO05D007342 2.6e-07 58.5 75 38.7
Solyc06g061210.4 Solanum lycopersicum HOM05D001063 ORTHO05D000986 2.6e-07 58.5 71 45.1
Peaxi162Scf00071g00425 Petunia axillaris HOM05D008200 ORTHO05D007342 3.4e-07 58.2 79 40.5
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 4.4e-07 57.8 49 49.0
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 4.4e-07 57.8 79 40.5
CAN.G201.41 Capsicum annuum HOM05D008200 ORTHO05D007342 7.5e-07 57.0 65 49.2
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 2.2e-06 55.5 49 46.9
Peaxi162Scf00391g00074 Petunia axillaris HOM05D008200 ORTHO05D007342 3.7e-06 54.7 64 48.4
Peaxi162Scf00391g00729 Petunia axillaris HOM05D008200 ORTHO05D007342 8.3e-06 53.5 78 42.3


User provided reference genes

Program Settings