Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.0e-188 661.8 356 100.0
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.4e-107 392.5 387 62.8
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 7.9e-104 381.3 385 60.3
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.7e-98 363.6 333 65.2
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 3.2e-97 359.4 370 58.9
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 4.0e-95 352.4 376 58.2
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.1e-94 350.9 358 58.9
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.3e-93 347.4 369 58.3
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 3.1e-92 342.8 371 56.6
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 3.1e-92 342.8 372 58.9
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 4.1e-92 342.4 390 54.9
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 7.0e-92 341.7 368 56.8
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 3.2e-89 332.8 396 53.3
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 7.2e-89 331.6 371 55.5
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 4.7e-88 328.9 368 54.6
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 6.8e-87 325.1 351 57.5
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 6.8e-87 325.1 366 56.0
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 1.2e-86 324.3 343 58.9
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 1.2e-86 324.3 343 58.9
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 1.2e-86 324.3 346 58.4
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 2.0e-86 323.6 355 55.2
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.1e-84 317.8 375 53.1
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 3.1e-84 316.2 372 53.0
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 4.1e-84 315.8 351 54.7
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 7.0e-84 315.1 365 54.5
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 7.0e-84 315.1 358 53.9
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 7.0e-84 315.1 364 55.5
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 7.0e-84 315.1 381 52.2
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 1.6e-83 313.9 358 55.3
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.0e-83 313.5 364 55.2
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 3.5e-83 312.8 381 51.7
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 7.7e-83 311.6 367 52.6
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 2.2e-82 310.1 359 55.4
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 3.8e-82 309.3 350 56.9
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 1.1e-81 307.8 332 58.1
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 1.1e-81 307.8 375 51.5
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 2.5e-81 306.6 343 57.4
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 7.2e-81 305.1 329 57.8
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 2.1e-80 303.5 374 53.2
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 2.7e-80 303.1 367 51.2
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.4e-79 300.8 336 53.0
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 2.3e-79 300.1 370 53.8
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 4.0e-79 299.3 378 50.5
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 8.8e-79 298.1 372 53.0
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 1.5e-78 297.4 367 52.3
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 2.0e-78 297.0 345 51.0
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.6e-78 296.6 378 50.3
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 3.4e-78 296.2 342 57.0
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 5.7e-78 295.4 373 53.6
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.7e-77 293.9 327 59.0
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 6.3e-77 292.0 367 52.6
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 8.3e-77 291.6 368 50.5
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 2.4e-76 290.0 352 51.1
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 3.1e-76 289.7 366 51.9
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 4.1e-76 289.3 352 51.1
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 4.1e-76 289.3 352 51.1
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 1.3e-74 284.3 351 50.1
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 1.3e-74 284.3 351 49.9
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 2.9e-74 283.1 335 54.3
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 6.6e-74 282.0 368 51.1
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 1.5e-73 280.8 372 48.4
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 9.5e-73 278.1 364 48.1
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 1.6e-72 277.3 368 50.5
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 1.6e-72 277.3 376 49.7
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 1.6e-72 277.3 336 52.4
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 2.1e-72 276.9 359 51.8
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 4.7e-72 275.8 364 48.6
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 1.4e-71 274.2 336 51.2
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 3.0e-71 273.1 367 49.6
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 4.0e-71 272.7 362 50.8
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 5.2e-71 272.3 341 52.2
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 6.8e-71 271.9 353 48.2
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 8.9e-71 271.6 363 47.9
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 1.2e-70 271.2 272 57.0
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.5e-70 270.8 342 51.2
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 2.0e-70 270.4 373 48.8
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 4.4e-70 269.2 378 47.1
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.4e-70 269.2 274 56.6
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 4.4e-70 269.2 332 52.7
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 1.3e-69 267.7 373 46.6
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 1.3e-69 267.7 373 46.6
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 2.2e-69 266.9 378 47.9
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 4.9e-69 265.8 363 47.7
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 6.4e-69 265.4 306 56.2
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 6.4e-69 265.4 369 48.5
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 8.3e-69 265.0 380 46.6
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 1.4e-68 264.2 336 48.5
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 1.4e-68 264.2 372 49.2
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 1.8e-68 263.8 371 46.6
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 4.1e-68 262.7 369 48.2
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 5.4e-68 262.3 252 59.5
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 9.2e-68 261.5 375 48.3
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 2.0e-67 260.4 351 49.3
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 3.5e-67 259.6 274 55.8
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 7.8e-67 258.5 314 54.5
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 8.6e-66 255.0 312 52.9
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.2e-62 244.6 339 46.9
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 9.8e-62 241.5 263 53.6
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 1.7e-61 240.7 273 51.6
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.7e-61 240.7 263 54.4
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.7e-61 239.6 263 54.0
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 4.9e-61 239.2 375 44.8
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.1e-60 238.0 246 55.7
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 2.4e-60 236.9 347 46.4
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 7.0e-60 235.3 337 49.0
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 7.0e-60 235.3 267 53.2
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 7.8e-59 231.9 353 41.9
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 7.8e-59 231.9 334 44.3
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 2.3e-58 230.3 248 52.4
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 6.6e-58 228.8 218 58.7
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 3.3e-57 226.5 305 46.2
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 7.3e-57 225.3 332 47.3
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 6.8e-55 218.8 243 52.7
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 1.2e-54 218.0 343 44.3
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.7e-53 214.2 243 52.3
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.7e-53 213.0 261 49.4
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.3e-50 204.5 263 49.4
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 1.3e-50 204.5 232 58.6
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 9.5e-49 198.4 376 40.4
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 1.8e-47 194.1 347 38.3
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 2.9e-45 186.8 389 37.8
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 1.9e-44 184.1 394 37.6
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 3.0e-42 176.8 349 38.1
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 8.6e-42 175.3 187 62.0
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 5.6e-41 172.6 219 47.0
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 3.4e-38 163.3 215 48.4
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 9.9e-38 161.8 215 47.9
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 1.0e-34 151.8 148 55.4
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 8.1e-32 142.1 135 67.4
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 7.9e-27 125.6 148 53.4
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 2.5e-25 120.6 189 49.7
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 6.7e-18 95.9 138 47.8
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.3e-17 93.2 200 39.0
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 3.7e-16 90.1 186 40.9
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 6.5e-13 79.3 123 44.7
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 6.7e-10 69.3 194 34.0
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.9e-09 67.8 59 67.8
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 5.7e-09 66.2 59 57.6
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.1e-08 64.3 99 44.4
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 4.8e-08 63.2 64 59.4
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 4.1e-07 60.1 138 38.4


User provided reference genes

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