Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 8.2e-70 266.9 134 100.0
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 5.7e-39 164.5 135 68.9
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.5e-39 164.1 128 71.1
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.7e-38 161.8 128 71.1
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.7e-38 161.8 128 71.1
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.7e-38 161.8 128 70.3
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.0e-37 157.5 135 64.4
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 7.8e-36 154.1 131 63.4
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.0e-35 153.7 134 64.9
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.7e-35 152.9 134 66.4
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.6e-35 150.6 134 61.9
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 1.9e-34 149.4 127 66.1
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 9.5e-34 147.1 135 61.5
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 1.6e-33 146.4 134 59.0
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.6e-33 146.4 132 62.9
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 2.8e-33 145.6 133 65.4
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 4.7e-33 144.8 129 63.6
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 4.7e-33 144.8 135 60.7
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 6.2e-33 144.4 133 63.2
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.2e-31 140.2 130 61.5
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.5e-31 139.8 132 60.6
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.0e-31 139.4 133 56.4
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.8e-31 137.9 132 60.6
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 9.8e-31 137.1 132 59.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.3e-30 136.7 128 60.2
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 2.2e-30 136.0 130 61.5
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.2e-30 136.0 134 62.7
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 2.9e-30 135.6 129 60.5
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 3.7e-30 135.2 129 62.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 4.9e-30 134.8 138 62.3
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 6.4e-30 134.4 133 56.4
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 6.4e-30 134.4 136 57.4
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 6.4e-30 134.4 131 58.0
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 8.3e-30 134.0 132 61.4
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 8.3e-30 134.0 135 57.0
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.4e-29 133.3 129 56.6
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.4e-29 133.3 129 56.6
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 5.4e-29 131.3 135 56.3
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 7.0e-29 131.0 128 57.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 9.2e-29 130.6 129 62.8
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 2.7e-28 129.0 122 56.6
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 4.6e-28 128.3 124 61.3
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 6.0e-28 127.9 132 56.1
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 7.8e-28 127.5 122 56.6
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 1.0e-27 127.1 123 56.9
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 1.7e-27 126.3 133 54.9
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 2.3e-27 125.9 120 57.5
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 3.0e-27 125.6 138 53.6
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 6.6e-27 124.4 145 53.1
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 6.6e-27 124.4 133 57.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 1.9e-26 122.9 124 57.3
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 4.3e-26 121.7 140 52.9
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 9.5e-26 120.6 141 51.8
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.2e-25 120.2 139 51.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.2e-25 120.2 139 51.8
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 2.1e-25 119.4 132 54.5
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 3.6e-25 118.6 133 51.9
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 6.2e-25 117.9 136 53.7
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 1.8e-24 116.3 127 51.2
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 4.0e-24 115.2 134 51.5
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 1.2e-23 113.6 130 50.8
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 1.5e-23 113.2 99 64.6
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 1.3e-22 110.2 126 52.4
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.3e-22 110.2 133 54.1
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.7e-22 109.8 129 50.4
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 2.2e-22 109.4 132 51.5
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 2.2e-22 109.4 120 52.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 1.1e-21 107.1 142 47.9
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.1e-21 107.1 129 48.1
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.1e-21 107.1 129 51.2
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.4e-21 104.8 127 48.8
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.4e-21 104.8 130 49.2
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.4e-21 104.8 130 47.7
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 5.4e-21 104.8 118 54.2
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 7.1e-21 104.4 133 51.1
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.2e-20 103.6 131 48.1
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.6e-20 103.2 119 50.4
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 2.1e-20 102.8 128 49.2
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 2.1e-20 102.8 122 52.5
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 2.7e-20 102.4 129 47.3
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 4.6e-20 101.7 129 49.6
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 6.0e-20 101.3 121 51.2
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 7.8e-20 100.9 136 48.5
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 7.8e-20 100.9 130 47.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 1.0e-19 100.5 123 52.0
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.0e-19 100.5 136 48.5
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.0e-19 100.5 122 51.6
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 2.3e-19 99.4 117 52.1
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.0e-19 99.0 130 49.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.0e-19 99.0 130 49.2
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 6.6e-19 97.8 121 47.1
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.6e-19 97.4 106 57.5
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-18 96.7 135 48.9
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.5e-18 96.7 135 48.9
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.3e-18 95.5 130 50.8
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.3e-18 95.1 136 47.1
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 5.6e-18 94.7 121 49.6
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 5.6e-18 94.7 134 48.5
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 7.3e-18 94.4 130 50.8
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 7.3e-18 94.4 121 48.8
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 7.3e-18 94.4 136 48.5
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 122 50.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 1.2e-17 93.6 130 50.8
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.2e-17 93.6 135 44.4
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.2e-17 93.6 106 58.5
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 1.2e-17 93.6 119 49.6
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.6e-17 93.2 121 49.6
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 1.6e-17 93.2 129 50.4
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 1.6e-17 93.2 129 50.4
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-17 92.8 123 50.4
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 2.1e-17 92.8 123 50.4
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.1e-17 92.8 121 51.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 2.8e-17 92.4 162 41.4
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 2.8e-17 92.4 123 47.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.6e-17 92.0 118 49.2
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 3.6e-17 92.0 145 46.9
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 3.6e-17 92.0 128 46.9
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.7e-17 91.7 121 47.9
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 6.2e-17 91.3 128 48.4
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.1e-17 90.9 121 47.9
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.1e-16 90.5 118 49.2
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.1e-16 90.5 126 46.8
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 1.4e-16 90.1 139 42.4
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 1.8e-16 89.7 138 46.4
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 3.1e-16 89.0 130 46.9
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 5.2e-16 88.2 124 45.2
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.9e-16 87.4 114 49.1
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.2e-15 87.0 131 46.6
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 2.0e-15 86.3 124 46.0
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.0e-15 86.3 176 34.1
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 2.6e-15 85.9 128 43.0
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.4e-15 85.5 126 46.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 4.4e-15 85.1 120 49.2
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.9e-15 84.0 126 46.0
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 9.9e-15 84.0 131 40.5
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 9.9e-15 84.0 128 46.1
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 1.3e-14 83.6 125 46.4
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.2e-14 82.8 119 47.9
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 2.2e-14 82.8 119 47.1
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.9e-14 82.4 122 45.9
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 2.9e-14 82.4 124 42.7
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 1.1e-13 80.5 122 41.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 129 42.6
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.4e-13 79.3 164 39.0
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 4.1e-13 78.6 155 39.4
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.2e-12 77.0 127 40.9
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 3.5e-12 75.5 94 45.7
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 2.3e-11 72.8 125 44.0
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 3.0e-11 72.4 86 51.2
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 3.0e-11 72.4 86 51.2
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.5e-10 69.3 143 37.8
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.6e-10 68.2 126 38.1
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.2e-09 67.0 121 34.7
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.2e-09 67.0 119 36.1
Os08g0448100 Oryza sativa ssp. japonica HOM05D001798 ORTHO05D005040 2.1e-09 66.2 144 35.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 3.6e-09 65.5 122 45.1
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 6.2e-09 64.7 137 34.3
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.2e-08 61.6 132 36.4
Glyma.04G075600 Glycine max HOM05D021496 ORTHO05D022761 2.6e-07 59.3 111 39.6
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 3.4e-07 58.9 123 37.4
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 5.8e-07 58.2 39 66.7
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.9e-07 57.4 108 42.6
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 1.3e-06 57.0 126 31.7
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.3e-06 57.0 91 44.0
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 2.9e-06 55.8 94 42.6


User provided reference genes

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