Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007300 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 4.0e-117 424.9 226 100.0
CSS0013540 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D008744 1.0e-88 330.5 214 86.9
Dinv34114 Davidia involucrata HOM05D002318 ORTHO05D008744 7.8e-81 304.3 220 75.9
Actinidia19922 Actinidia chinensis HOM05D002318 ORTHO05D008744 8.1e-78 294.3 220 74.5
vmacro01330 Vaccinium macrocarpon HOM05D002318 ORTHO05D008744 9.0e-77 290.8 222 71.2
Hma1.2p1_0354F.1_g133650 Hydrangea macrophylla HOM05D002318 ORTHO05D008744 3.2e-74 282.3 220 70.5
Rhsim12G0076700 Rhododendron simsii HOM05D002318 ORTHO05D008744 3.5e-73 278.9 227 69.2
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 2.1e-70 269.6 217 68.7
Thecc.02G336500 Theobroma cacao HOM05D002318 ORTHO05D008744 9.0e-69 264.2 220 66.8
GSVIVG01012177001 Vitis vinifera HOM05D002318 ORTHO05D008744 1.5e-68 263.5 221 67.9
Atru.chr11.1690 Acer truncatum HOM05D002318 ORTHO05D008744 3.4e-68 262.3 221 67.4
QL03p070830 Quercus lobata HOM05D002318 ORTHO05D008744 1.4e-66 256.9 220 65.5
Oeu021096.1 Olea europaea HOM05D002318 ORTHO05D008744 2.1e-65 253.1 221 64.3
MD16G1064900 Malus domestica HOM05D002318 ORTHO05D008744 2.7e-65 252.7 220 64.1
Nitab4.5_0000334g0260 Nicotiana tabacum HOM05D002318 ORTHO05D008744 2.7e-65 252.7 218 64.7
Cpa.g.sc1.87 Carica papaya HOM05D002318 ORTHO05D008744 7.9e-65 251.1 219 66.7
PGSC0003DMG401028329 Solanum tuberosum HOM05D002318 ORTHO05D008744 7.9e-65 251.1 219 64.4
PGSC0003DMG402022110 Solanum tuberosum HOM05D002318 ORTHO05D008744 7.9e-65 251.1 219 64.4
Cfa008908 Carpinus fangiana HOM05D002318 ORTHO05D008744 1.0e-64 250.8 220 63.6
PGR119G0925 Punica granatum HOM05D002318 ORTHO05D008744 1.3e-64 250.4 219 63.0
Haze_11934 Corylus avellana HOM05D002318 ORTHO05D008744 1.8e-64 250.0 220 63.2
Peaxi162Scf00314g00023 Petunia axillaris HOM05D002318 ORTHO05D008744 1.8e-64 250.0 230 62.6
Duzib268G0798 Durio zibethinus HOM05D002318 ORTHO05D008744 2.3e-64 249.6 221 63.8
Aqoxy3G03551 Aquilegia oxysepala HOM05D002318 ORTHO05D008744 1.1e-63 247.3 220 62.7
CiPaw.05G128000 Carya illinoinensis HOM05D002318 ORTHO05D008744 1.1e-63 247.3 220 66.8
RcHm_v2.0_Chr4g0438871 Rosa chinensis HOM05D002318 ORTHO05D008744 1.1e-63 247.3 220 65.0
Sopen05g007450 Solanum pennellii HOM05D002318 ORTHO05D008744 1.1e-63 247.3 219 63.0
CAN.G1340.13 Capsicum annuum HOM05D002318 ORTHO05D008744 1.9e-63 246.5 219 63.5
Phvul.002G069400 Phaseolus vulgaris HOM05D002318 ORTHO05D008744 2.5e-63 246.1 220 60.9
Ciclev10032054m.g Citrus clementina HOM05D002318 ORTHO05D008744 3.3e-63 245.7 221 65.6
Cc11_g12380 Coffea canephora HOM05D002318 ORTHO05D008744 5.6e-63 245.0 220 60.9
COL.COLO4_27936 Corchorus olitorius HOM05D002318 ORTHO05D008744 5.6e-63 245.0 223 64.1
Sc11g0002270 Simmondsia chinensis HOM05D002318 ORTHO05D008744 7.4e-63 244.6 220 64.1
Potri.010G161600 Populus trichocarpa HOM05D002318 ORTHO05D008744 1.3e-62 243.8 195 69.2
THA.LOC104805183 Tarenaya hassleriana HOM05D002318 ORTHO05D008744 1.6e-62 243.4 219 65.3
VMungo1215G2584 Vigna mungo HOM05D002318 ORTHO05D008744 1.6e-62 243.4 220 61.8
FvH4_4g30500 Fragaria vesca HOM05D002318 ORTHO05D008744 2.8e-62 242.7 220 63.6
Sabra10G0122900 Salix brachista HOM05D002318 ORTHO05D008744 2.8e-62 242.7 222 64.0
Gorai.013G091200 Gossypium raimondii HOM05D002318 ORTHO05D008744 4.8e-62 241.9 221 61.1
Gohir.A13G079900 Gossypium hirsutum HOM05D002318 ORTHO05D008744 1.4e-61 240.4 221 61.1
FAN17G2010 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.8e-61 240.0 220 62.7
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.4e-61 239.6 220 62.7
Nn3g17371 Nelumbo nucifera HOM05D002318 ORTHO05D008744 3.1e-61 239.2 223 62.3
Hund05860 Selenicereus undatus HOM05D002318 ORTHO05D008744 5.3e-61 238.4 216 64.8
EL10As3g23350 Beta vulgaris HOM05D002318 ORTHO05D008744 6.9e-61 238.0 220 63.2
TWI75G0802 Tripterygium wilfordii HOM05D002318 ORTHO05D008744 1.2e-60 237.3 223 60.5
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 1.5e-60 236.9 216 61.6
Glyma.02G113500 Glycine max HOM05D002318 ORTHO05D008744 2.6e-60 236.1 220 60.9
HanXRQChr12g0362851 Helianthus annuus HOM05D002318 ORTHO05D008744 4.5e-60 235.3 218 63.3
TPR.G22412 Trifolium pratense HOM05D002318 ORTHO05D008744 5.8e-60 235.0 221 59.7
Prupe.1G282000 Prunus persica HOM05D002318 ORTHO05D008744 7.6e-60 234.6 220 60.9
FAN22G0051 Fragaria x ananassa HOM05D002318 ORTHO05D008744 2.2e-59 233.0 220 61.4
Lalb_Chr17g0340981 Lupinus albus HOM05D002318 ORTHO05D008744 2.9e-59 232.6 221 57.9
MBI16_g06774_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D008744 2.9e-59 232.6 220 62.3
Ah.13g073950 Amaranthus hybridus HOM05D002318 ORTHO05D008744 3.8e-59 232.3 216 62.0
CANSAT54G0184 Cannabis sativa HOM05D002318 ORTHO05D008744 6.5e-59 231.5 154 78.6
Eucgr.G02464 Eucalyptus grandis HOM05D002318 ORTHO05D008744 6.5e-59 231.5 172 69.8
AUR62043182 Chenopodium quinoa HOM05D002318 ORTHO05D008744 8.4e-59 231.1 220 62.7
Manes.01G030400 Manihot esculenta HOM05D002318 ORTHO05D008744 1.1e-58 230.7 221 61.1
Psat2g128360 Pisum sativum HOM05D002318 ORTHO05D008744 1.4e-58 230.3 217 59.4
Solyc05g012620.4 Solanum lycopersicum HOM05D002318 ORTHO05D008744 1.4e-58 230.3 157 76.4
Thhalv10004578m.g Eutrema salsugineum HOM05D002318 ORTHO05D008744 4.2e-58 228.8 216 63.0
Ca_04907_v3 Cicer arietinum L. HOM05D002318 ORTHO05D008744 5.5e-58 228.4 220 57.3
FAN12G0082 Fragaria x ananassa HOM05D002318 ORTHO05D008744 7.1e-58 228.0 210 63.3
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 1.2e-57 227.3 143 86.0
Glyma.01G055000 Glycine max HOM05D002318 ORTHO05D008744 3.5e-57 225.7 188 64.9
AL5G13100 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 6.0e-57 224.9 218 62.8
AL5G13140 Arabidopsis lyrata HOM05D002318 ORTHO05D008744 6.0e-57 224.9 218 62.8
Lj2g0021077 Lotus japonicus HOM05D002318 ORTHO05D008744 6.0e-57 224.9 221 57.0
CARHR145730 Cardamine hirsuta HOM05D002318 ORTHO05D008744 7.9e-57 224.6 219 62.6
DCAR_027449 Daucus carota HOM05D002318 ORTHO05D008744 1.0e-56 224.2 219 59.8
Carub.0005s0236 Capsella rubella HOM05D002318 ORTHO05D008744 1.8e-56 223.4 218 61.9
Migut.L01223 Erythranthe guttata HOM05D002318 ORTHO05D008744 1.8e-56 223.4 222 59.9
Sp2g14310 Schrenkiella parvula HOM05D002318 ORTHO05D008744 1.8e-56 223.4 218 62.4
MELO3C011434.2 Cucumis melo HOM05D002318 ORTHO05D008744 2.3e-56 223.0 220 57.3
CsaV3_6G032440 Cucumis sativus L. HOM05D002318 ORTHO05D008744 3.9e-56 222.2 220 56.8
Sed0004708 Sechium edule HOM05D002318 ORTHO05D008744 3.9e-56 222.2 217 56.7
ECA233G4874 Erigeron canadensis HOM05D002318 ORTHO05D008744 5.1e-56 221.9 213 60.6
AT2G03390 Arabidopsis thaliana HOM05D002318 ORTHO05D008744 1.1e-55 220.7 217 62.2
BcaC06g34000 Brassica carinata HOM05D002318 ORTHO05D008744 1.9e-55 219.9 217 60.4
arahy.Tifrunner.gnm1.ann1.TF58FW Arachis hypogaea HOM05D002318 ORTHO05D008744 2.5e-55 219.5 222 55.9
Aa31LG2G7170 Aethionema arabicum HOM05D002318 ORTHO05D008744 3.3e-55 219.2 219 60.7
arahy.Tifrunner.gnm1.ann1.T0481B Arachis hypogaea HOM05D002318 ORTHO05D008744 4.3e-55 218.8 222 55.9
ATR0111G011 Amborella trichopoda HOM05D002318 ORTHO05D008744 1.6e-54 216.9 202 60.9
arahy.Tifrunner.gnm1.ann1.1U2S5X Arachis hypogaea HOM05D002318 ORTHO05D008744 1.6e-54 216.9 222 55.4
C07p33850 Brassica napus HOM05D002318 ORTHO05D008744 1.6e-54 216.9 218 60.6
BraA06t27203Z Brassica rapa HOM05D002318 ORTHO05D008744 2.1e-54 216.5 218 61.0
BolC7t43899H Brassica oleracea HOM05D002318 ORTHO05D008744 4.8e-54 215.3 218 60.1
arahy.Tifrunner.gnm1.ann1.T5ZGHX Arachis hypogaea HOM05D002318 ORTHO05D008744 6.3e-54 214.9 179 63.7
BcaC06g31184 Brassica carinata HOM05D002318 ORTHO05D008744 1.8e-53 213.4 219 59.8
A06p43150 Brassica napus HOM05D002318 ORTHO05D008744 1.8e-53 213.4 218 60.6
ClCG08G010240 Citrullus lanatus HOM05D002318 ORTHO05D008744 1.8e-53 213.4 251 50.6
PSO591G0040 Papaver somniferum HOM05D002318 ORTHO05D008744 9.0e-53 211.1 213 56.3
SalBow2G2755 Salvia bowleyana HOM05D002318 ORTHO05D008744 1.6e-49 200.3 203 55.2
Medtr5g043480 Medicago truncatula HOM05D002318 ORTHO05D008744 4.6e-49 198.7 215 54.0
unitig_22.g6902 Utricularia gibba HOM05D002318 ORTHO05D008744 6.1e-49 198.4 214 56.1
Gohir.D13G079700 Gossypium hirsutum HOM05D002318 ORTHO05D008744 5.1e-48 195.3 221 52.5
CDE04G0061 Ceratophyllum demersum HOM05D002318 ORTHO05D008744 8.7e-48 194.5 177 62.1
AUR62038089 Chenopodium quinoa HOM05D002318 ORTHO05D008744 1.5e-47 193.7 220 56.4
Os08g0172200 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D008744 7.4e-47 191.4 165 64.2
Zm00001eb370310 Zea mays HOM05D002318 ORTHO05D008744 3.7e-46 189.1 153 64.7
SEGI_16280 Sequoiadendron giganteum HOM05D002318 ORTHO05D008744 9.4e-42 174.5 206 51.5
Aa31sc734G30 Aethionema arabicum HOM05D002318 ORTHO05D008744 5.1e-40 168.7 140 67.1
Mapoly0001s0530 Marchantia polymorpha HOM05D002318 ORTHO05D008744 5.3e-37 158.7 137 59.9
Lj6C782T15 Lonicera japonica HOM05D002318 ORTHO05D008744 1.5e-36 157.1 227 46.7
SGA_v2.0_scaffold16G07752 Striga asiatica HOM05D002318 ORTHO05D008744 2.0e-31 140.2 216 45.8
Pp3c7_3960 Physcomitrium patens HOM05D002318 ORTHO05D008744 4.1e-29 132.5 137 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1985 Anthoceros agrestis HOM05D002318 ORTHO05D008744 1.2e-28 131.0 145 49.0
CBR_g27967 Chara braunii HOM05D002318 ORTHO05D008744 1.7e-27 127.1 147 49.7
FAN16G1553 Fragaria x ananassa HOM05D002318 ORTHO05D008744 1.9e-26 123.6 90 73.3
Actinidia31948 Actinidia chinensis HOM05D002318 ORTHO05D008744 5.5e-26 122.1 100 67.0
SMO115G0105 Selaginella moellendorffii HOM05D002318 ORTHO05D008744 1.1e-18 97.8 108 50.0
Cre02.g113700 Chlamydomonas reinhardtii HOM05D002318 ORTHO05D008744 7.5e-15 85.1 140 39.3
PRCOL_00000845 Prasinoderma coloniale HOM05D002318 ORTHO05D008744 1.6e-12 77.4 151 35.1
Lsat_1_v5_gn_5_151580 Lactuca sativa HOM05D002318 ORTHO05D008744 5.2e-08 62.4 98 39.8


User provided reference genes

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