Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007298 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 5.2e-51 204.1 106 100.0
CSS0046994 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 1.2e-31 139.8 117 70.1
CSS0047718 Camellia sinensis var. sinensis HOM05D003595 ORTHO05D004132 2.7e-31 138.7 120 68.3
Dinv22175 Davidia involucrata HOM05D000545 ORTHO05D000539 1.3e-25 119.8 119 63.9
Manes.14G003000 Manihot esculenta HOM05D003595 ORTHO05D004132 8.3e-25 117.1 128 53.9
CiPaw.14G118800 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.4e-24 116.3 126 58.7
QL01p004672 Quercus lobata HOM05D003595 ORTHO05D004132 2.4e-24 115.5 124 58.1
Actinidia23974 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.0e-24 114.0 119 58.8
Manes.06G164000 Manihot esculenta HOM05D003595 ORTHO05D004132 2.7e-23 112.1 132 51.5
Cfa009775 Carpinus fangiana HOM05D003595 ORTHO05D004132 1.0e-22 110.2 122 56.6
Haze_23141 Corylus avellana HOM05D003595 ORTHO05D004132 1.0e-22 110.2 116 58.6
Actinidia06343 Actinidia chinensis HOM05D003595 ORTHO05D004132 1.3e-22 109.8 125 53.6
TWI32G0089 Tripterygium wilfordii HOM05D003595 ORTHO05D004132 5.0e-22 107.8 107 57.0
TAR633G0913 Trochodendron aralioides HOM05D003595 ORTHO05D004132 5.0e-22 107.8 108 55.6
Duzib168G1914 Durio zibethinus HOM05D003595 ORTHO05D004132 5.6e-21 104.4 129 55.8
Sabra16G0157600 Salix brachista HOM05D003595 ORTHO05D004132 9.5e-21 103.6 69 69.6
Potri.001G257700 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.2e-20 103.2 124 50.0
TAR636G3263 Trochodendron aralioides HOM05D003595 ORTHO05D004132 1.2e-20 103.2 125 52.8
Gohir.D09G110700 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.6e-20 101.7 124 52.4
TAR623G0789 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.6e-20 101.7 72 69.4
TAR623G1528 Trochodendron aralioides HOM05D003595 ORTHO05D004132 3.6e-20 101.7 72 69.4
Gohir.A09G114100 Gossypium hirsutum HOM05D003595 ORTHO05D004132 4.7e-20 101.3 124 52.4
Thecc.09G234200 Theobroma cacao HOM05D003595 ORTHO05D004132 4.7e-20 101.3 129 51.9
Gorai.006G128400 Gossypium raimondii HOM05D003595 ORTHO05D004132 8.1e-20 100.5 124 52.4
Dinv18068 Davidia involucrata HOM05D003595 ORTHO05D004132 1.1e-19 100.1 59 74.6
CANSAT54G2715 Cannabis sativa HOM05D003595 ORTHO05D004132 1.8e-19 99.4 72 70.8
Nn7g36211 Nelumbo nucifera HOM05D003595 ORTHO05D004132 3.1e-19 98.6 127 50.4
Atru.chr3.2713 Acer truncatum HOM05D003595 ORTHO05D004132 4.0e-19 98.2 66 77.3
Phvul.006G062400 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 5.2e-19 97.8 82 58.5
Prupe.4G249800 Prunus persica HOM05D003595 ORTHO05D004132 5.2e-19 97.8 132 50.0
VMungo0540G1156 Vigna mungo HOM05D003595 ORTHO05D004132 5.2e-19 97.8 82 58.5
CiPaw.13G160700 Carya illinoinensis HOM05D003595 ORTHO05D004132 6.8e-19 97.4 130 50.0
Cc00_g16730 Coffea canephora HOM05D003595 ORTHO05D004132 6.8e-19 97.4 114 51.8
RcHm_v2.0_Chr5g0052211 Rosa chinensis HOM05D003595 ORTHO05D004132 6.8e-19 97.4 71 70.4
Glyma.08G335700 Glycine max HOM05D003595 ORTHO05D004132 8.9e-19 97.1 67 70.1
Potri.009G053000 Populus trichocarpa HOM05D003595 ORTHO05D004132 1.2e-18 96.7 64 71.9
FvH4_3g28800 Fragaria vesca HOM05D003595 ORTHO05D004132 2.6e-18 95.5 80 63.8
FAN25G1008 Fragaria x ananassa HOM05D003595 ORTHO05D004132 2.6e-18 95.5 80 63.8
Gohir.D05G072400 Gossypium hirsutum HOM05D003595 ORTHO05D004132 2.6e-18 95.5 130 53.1
GSVIVG01025255001 Vitis vinifera HOM05D003595 ORTHO05D004132 2.6e-18 95.5 115 53.0
Eucgr.B03689 Eucalyptus grandis HOM05D003595 ORTHO05D004132 3.4e-18 95.1 129 52.7
Cpa.g.sc84.51 Carica papaya HOM05D003595 ORTHO05D004132 4.4e-18 94.7 124 49.2
FAN21G3881 Fragaria x ananassa HOM05D003595 ORTHO05D004132 5.8e-18 94.4 67 70.1
Glyma.18G070800 Glycine max HOM05D003595 ORTHO05D004132 5.8e-18 94.4 64 71.9
Gorai.009G073400 Gossypium raimondii HOM05D003595 ORTHO05D004132 7.5e-18 94.0 130 51.5
Oeu025870.1 Olea europaea HOM05D003595 ORTHO05D004132 7.5e-18 94.0 135 47.4
FAN16G0889 Fragaria x ananassa HOM05D003595 ORTHO05D004132 9.8e-18 93.6 67 68.7
FAN11G1213 Fragaria x ananassa HOM05D003595 ORTHO05D004132 1.3e-17 93.2 80 62.5
Lj6g0013857 Lotus japonicus HOM05D003595 ORTHO05D004132 1.7e-17 92.8 74 64.9
Lalb_Chr18g0050501 Lupinus albus HOM05D003595 ORTHO05D004132 4.9e-17 91.3 80 60.0
Nn2g15359 Nelumbo nucifera HOM05D003595 ORTHO05D004132 4.9e-17 91.3 128 50.8
Gohir.A05G069500 Gossypium hirsutum HOM05D003595 ORTHO05D004132 6.4e-17 90.9 130 51.5
Oeu063323.1 Olea europaea HOM05D003595 ORTHO05D004132 1.4e-16 89.7 133 47.4
Phvul.008G283300 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 1.4e-16 89.7 59 69.5
MBI02_g05660_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 2.4e-16 89.0 109 46.8
Rhsim01G0191900 Rhododendron simsii HOM05D003595 ORTHO05D004132 2.4e-16 89.0 61 68.9
Glyma.02G303900 Glycine max HOM05D003595 ORTHO05D004132 4.1e-16 88.2 105 53.3
LjContig00081g0018996 Lotus japonicus HOM05D003595 ORTHO05D004132 5.4e-16 87.8 66 68.2
MSTRG.18428 Avicennia marina HOM05D003595 ORTHO05D004132 7.1e-16 87.4 134 47.8
MBI04_g36072_MAGBIO Magnolia biondii HOM05D003595 ORTHO05D004132 7.1e-16 87.4 112 49.1
TPR.G30109 Trifolium pratense HOM05D003595 ORTHO05D004132 7.1e-16 87.4 72 58.3
MD03G1174700 Malus domestica HOM05D003595 ORTHO05D004132 1.6e-15 86.3 134 44.8
Medtr3g061570 Medicago truncatula HOM05D003595 ORTHO05D004132 1.6e-15 86.3 123 42.3
Nitab4.5_0002741g0180 Nicotiana tabacum HOM05D003595 ORTHO05D004132 2.1e-15 85.9 62 64.5
PGSC0003DMG400007365 Solanum tuberosum HOM05D003595 ORTHO05D004132 2.1e-15 85.9 87 47.1
Cfa016846 Carpinus fangiana HOM05D003595 ORTHO05D004132 2.7e-15 85.5 72 58.3
Ca_14877_v3 Cicer arietinum L. HOM05D003595 ORTHO05D004132 2.7e-15 85.5 127 43.3
VMungo1383G3074 Vigna mungo HOM05D003595 ORTHO05D004132 2.7e-15 85.5 72 58.3
MSTRG.17593 Avicennia marina HOM05D003595 ORTHO05D004132 3.5e-15 85.1 125 49.6
PGR102G2999 Punica granatum HOM05D003595 ORTHO05D004132 3.5e-15 85.1 98 50.0
Actinidia24526 Actinidia chinensis HOM05D003595 ORTHO05D004132 7.8e-15 84.0 81 53.1
Sed0003787 Sechium edule HOM05D003595 ORTHO05D004132 1.0e-14 83.6 116 50.0
ClCG02G023190 Citrullus lanatus HOM05D003595 ORTHO05D004132 1.3e-14 83.2 80 55.0
Lalb_Chr15g0082551 Lupinus albus HOM05D003595 ORTHO05D004132 1.3e-14 83.2 116 47.4
MD11G1192700 Malus domestica HOM05D003595 ORTHO05D004132 1.3e-14 83.2 130 43.1
Migut.N02319 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.7e-14 82.8 100 49.0
arahy.Tifrunner.gnm1.ann1.ST54C5 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.3e-14 82.4 57 70.2
HanXRQChr02g0056211 Helianthus annuus HOM05D003595 ORTHO05D004132 2.3e-14 82.4 103 45.6
Lalb_Chr20g0110801 Lupinus albus HOM05D003595 ORTHO05D004132 2.3e-14 82.4 87 54.0
ClCG03G013230 Citrullus lanatus HOM05D003595 ORTHO05D004132 3.9e-14 81.6 53 69.8
Thhalv10011876m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 5.1e-14 81.3 105 47.6
Sed0023013 Sechium edule HOM05D003595 ORTHO05D004132 5.1e-14 81.3 109 46.8
Glyma.19G141300 Glycine max HOM05D003595 ORTHO05D004132 6.6e-14 80.9 118 45.8
Lsat_1_v5_gn_6_48040 Lactuca sativa HOM05D003595 ORTHO05D004132 6.6e-14 80.9 108 42.6
MSTRG.21376 Avicennia marina HOM05D003595 ORTHO05D004132 1.1e-13 80.1 133 43.6
CsaV3_4G024290 Cucumis sativus L. HOM05D003595 ORTHO05D004132 1.1e-13 80.1 108 48.1
Thecc.05G160100 Theobroma cacao HOM05D003595 ORTHO05D004132 1.9e-13 79.3 64 56.2
Carub.0001s4023 Capsella rubella HOM05D003595 ORTHO05D004132 2.5e-13 79.0 56 66.1
Sed0006790 Sechium edule HOM05D003595 ORTHO05D004132 3.3e-13 78.6 53 66.0
Sopen11g025480 Solanum pennellii HOM05D003595 ORTHO05D004132 3.3e-13 78.6 67 61.2
SGA_v2.0_scaffold42G16100 Striga asiatica HOM05D003595 ORTHO05D004132 3.3e-13 78.6 122 44.3
AL1G59180 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 4.3e-13 78.2 113 46.9
C01p43270 Brassica napus HOM05D003595 ORTHO05D004132 4.3e-13 78.2 70 51.4
MELO3C014591.2 Cucumis melo HOM05D003595 ORTHO05D004132 4.3e-13 78.2 114 45.6
TPR.G1275 Trifolium pratense HOM05D003595 ORTHO05D004132 4.3e-13 78.2 84 53.6
BolC1t04289H Brassica oleracea HOM05D003595 ORTHO05D004132 7.3e-13 77.4 51 68.6
BraA06t23462Z Brassica rapa HOM05D003595 ORTHO05D004132 9.5e-13 77.0 56 67.9
Thhalv10022277m.g Eutrema salsugineum HOM05D003595 ORTHO05D004132 9.5e-13 77.0 53 67.9
Medtr1g052770 Medicago truncatula HOM05D003595 ORTHO05D004132 9.5e-13 77.0 102 46.1
Phvul.007G253900 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 9.5e-13 77.0 57 59.6
THA.LOC104817909 Tarenaya hassleriana HOM05D003595 ORTHO05D004132 9.5e-13 77.0 126 42.9
A06p02550 Brassica napus HOM05D003595 ORTHO05D004132 1.2e-12 76.6 102 47.1
CARHR096780 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.6e-12 76.3 51 68.6
MELO3C015194.2 Cucumis melo HOM05D003595 ORTHO05D004132 2.1e-12 75.9 57 64.9
Sabra16G0057000 Salix brachista HOM05D003595 ORTHO05D004132 2.1e-12 75.9 104 42.3
DCAR_031542 Daucus carota HOM05D003595 ORTHO05D004132 2.8e-12 75.5 61 57.4
Potri.006G053600 Populus trichocarpa HOM05D003595 ORTHO05D004132 2.8e-12 75.5 99 45.5
QL07p021139 Quercus lobata HOM05D003595 ORTHO05D004132 2.8e-12 75.5 71 49.3
BcaB04g20620 Brassica carinata HOM05D003595 ORTHO05D004132 3.6e-12 75.1 50 68.0
Glyma.02G182300 Glycine max HOM05D003595 ORTHO05D004132 3.6e-12 75.1 108 46.3
Potri.016G053900 Populus trichocarpa HOM05D003595 ORTHO05D004132 4.7e-12 74.7 114 42.1
VMungo0720G0045 Vigna mungo HOM05D003595 ORTHO05D004132 4.7e-12 74.7 57 56.1
EL10Ac4g10246 Beta vulgaris HOM05D003595 ORTHO05D004132 6.2e-12 74.3 57 57.9
BcaC08g43305 Brassica carinata HOM05D003595 ORTHO05D004132 6.2e-12 74.3 102 46.1
C06p06520 Brassica napus HOM05D003595 ORTHO05D004132 6.2e-12 74.3 102 46.1
BolC6t35764H Brassica oleracea HOM05D003595 ORTHO05D004132 6.2e-12 74.3 102 46.1
Migut.D00603 Erythranthe guttata HOM05D003595 ORTHO05D004132 1.4e-11 73.2 70 55.7
Medtr5g096855 Medicago truncatula HOM05D003595 ORTHO05D004132 1.4e-11 73.2 111 45.9
Eucgr.J00765 Eucalyptus grandis HOM05D003595 ORTHO05D004132 1.8e-11 72.8 63 57.1
CsaV3_1G042810 Cucumis sativus L. HOM05D003595 ORTHO05D004132 2.3e-11 72.4 56 64.3
Glyma.03G138300 Glycine max HOM05D003595 ORTHO05D004132 2.3e-11 72.4 118 44.1
A03p41960 Brassica napus HOM05D003595 ORTHO05D004132 3.1e-11 72.0 51 64.7
BcaC05g27345 Brassica carinata HOM05D003595 ORTHO05D004132 4.0e-11 71.6 115 45.2
C05p32690 Brassica napus HOM05D003595 ORTHO05D004132 4.0e-11 71.6 115 45.2
BolC5t32002H Brassica oleracea HOM05D003595 ORTHO05D004132 4.0e-11 71.6 115 45.2
BcaB06g26163 Brassica carinata HOM05D003595 ORTHO05D004132 5.2e-11 71.2 129 40.3
A01p33890 Brassica napus HOM05D003595 ORTHO05D004132 6.8e-11 70.9 70 48.6
BraA01t03497Z Brassica rapa HOM05D003595 ORTHO05D004132 6.8e-11 70.9 70 48.6
BraA03t13349Z Brassica rapa HOM05D003595 ORTHO05D004132 6.8e-11 70.9 51 62.7
Gorai.001G138100 Gossypium raimondii HOM05D003595 ORTHO05D004132 6.8e-11 70.9 66 63.6
Actinidia09350 Actinidia chinensis HOM05D003595 ORTHO05D004132 8.9e-11 70.5 104 42.3
Gohir.D07G127800 Gossypium hirsutum HOM05D003595 ORTHO05D004132 8.9e-11 70.5 104 46.2
Manes.09G025100 Manihot esculenta HOM05D003595 ORTHO05D004132 8.9e-11 70.5 99 42.4
AT3G20898 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 1.2e-10 70.1 103 45.6
Sabra06G0038000 Salix brachista HOM05D003595 ORTHO05D004132 1.2e-10 70.1 99 43.4
Sp3g18930 Schrenkiella parvula HOM05D003595 ORTHO05D004132 1.2e-10 70.1 50 64.0
C03p51360 Brassica napus HOM05D003595 ORTHO05D004132 1.5e-10 69.7 131 38.9
AUR62000124 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.5e-10 69.7 62 58.1
AUR62019305 Chenopodium quinoa HOM05D003595 ORTHO05D004132 1.5e-10 69.7 62 58.1
AL3G34860 Arabidopsis lyrata HOM05D003595 ORTHO05D004132 2.0e-10 69.3 48 66.7
AT1G51355 Arabidopsis thaliana HOM05D003595 ORTHO05D004132 2.0e-10 69.3 116 46.6
BcaB07g33584 Brassica carinata HOM05D003595 ORTHO05D004132 2.0e-10 69.3 89 46.1
A05p19650 Brassica napus HOM05D003595 ORTHO05D004132 2.0e-10 69.3 113 45.1
BraA05t21668Z Brassica rapa HOM05D003595 ORTHO05D004132 2.0e-10 69.3 135 38.5
Carub.0003s2088 Capsella rubella HOM05D003595 ORTHO05D004132 2.0e-10 69.3 48 66.7
Aa31LG8G7720 Aethionema arabicum HOM05D003595 ORTHO05D004132 2.6e-10 68.9 49 63.3
Glyma.10G100700 Glycine max HOM05D003595 ORTHO05D004132 2.6e-10 68.9 68 51.5
A05p27810 Brassica napus HOM05D003595 ORTHO05D004132 3.4e-10 68.6 135 38.5
Sed0028187 Sechium edule HOM05D003595 ORTHO05D004132 3.4e-10 68.6 48 64.6
Lalb_Chr04g0247411 Lupinus albus HOM05D003595 ORTHO05D004132 4.4e-10 68.2 105 39.0
Lalb_Chr04g0247651 Lupinus albus HOM05D003595 ORTHO05D004132 4.4e-10 68.2 105 39.0
BcaC01g03534 Brassica carinata HOM05D003595 ORTHO05D004132 5.8e-10 67.8 131 38.2
BolC3t17422H Brassica oleracea HOM05D003595 ORTHO05D004132 5.8e-10 67.8 131 38.2
BcaB04g17226 Brassica carinata HOM05D003595 ORTHO05D004132 1.3e-09 66.6 112 43.8
CARHR041430 Cardamine hirsuta HOM05D003595 ORTHO05D004132 1.3e-09 66.6 111 43.2
CiPaw.09G036200 Carya illinoinensis HOM05D003595 ORTHO05D004132 1.3e-09 66.6 85 47.1
BcaB06g26165 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-09 66.2 135 35.6
BcaC05g28203 Brassica carinata HOM05D003595 ORTHO05D004132 1.7e-09 66.2 135 35.6
C05p43150 Brassica napus HOM05D003595 ORTHO05D004132 1.7e-09 66.2 135 35.6
BolC5t33045H Brassica oleracea HOM05D003595 ORTHO05D004132 1.7e-09 66.2 135 35.6
Manes.07G063550 Manihot esculenta HOM05D003595 ORTHO05D004132 2.2e-09 65.9 67 49.3
ATR0332G104 Amborella trichopoda HOM05D003595 ORTHO05D004132 2.9e-09 65.5 61 54.1
BraA05t20870Z Brassica rapa HOM05D003595 ORTHO05D004132 2.9e-09 65.5 113 44.2
BraA05t20871Z Brassica rapa HOM05D003595 ORTHO05D004132 2.9e-09 65.5 113 44.2
Ciclev10006718m.g Citrus clementina HOM05D003595 ORTHO05D004132 6.4e-09 64.3 51 52.9
Phvul.001G135700 Phaseolus vulgaris HOM05D003595 ORTHO05D004132 6.4e-09 64.3 114 43.0
SGA_v2.0_scaffold247G44878 Striga asiatica HOM05D003595 ORTHO05D004132 6.4e-09 64.3 60 56.7
Atru.chr1.1053 Acer truncatum HOM05D003595 ORTHO05D004132 1.4e-08 63.2 67 46.3
arahy.Tifrunner.gnm1.ann1.IAUU74 Arachis hypogaea HOM05D003595 ORTHO05D004132 2.4e-08 62.4 63 54.0
Aqoxy2G00199 Aquilegia oxysepala HOM05D003595 ORTHO05D004132 3.2e-08 62.0 93 41.9
Ah.04g161940 Amaranthus hybridus HOM05D000545 ORTHO05D000539 4.1e-08 61.6 56 53.6
arahy.Tifrunner.gnm1.ann1.8RT1B2 Arachis hypogaea HOM05D003595 ORTHO05D004132 5.4e-08 61.2 60 55.0
Migut.J01773 Erythranthe guttata HOM05D003595 ORTHO05D004132 5.4e-08 61.2 58 56.9
Lalb_Chr17g0349061 Lupinus albus HOM05D003595 ORTHO05D004132 7.1e-08 60.8 97 44.3
COL.COLO4_28188 Corchorus olitorius HOM05D003595 ORTHO05D004132 1.6e-07 59.7 52 53.8
TAR636G3128 Trochodendron aralioides HOM05D004372 ORTHO05D004331 2.1e-07 59.3 69 42.0
Eucgr.A02382 Eucalyptus grandis HOM05D003595 ORTHO05D004132 2.7e-07 58.9 61 47.5
Aa31LG10G3530 Aethionema arabicum HOM05D003595 ORTHO05D004132 4.6e-07 58.2 45 62.2
Sc09g0000730 Simmondsia chinensis HOM05D003595 ORTHO05D004132 6.0e-07 57.8 53 54.7
Gohir.D11G328300 Gossypium hirsutum HOM05D003595 ORTHO05D004132 7.8e-07 57.4 96 42.7
Gorai.007G359500 Gossypium raimondii HOM05D003595 ORTHO05D004132 7.8e-07 57.4 96 42.7
TAR633G2336 Trochodendron aralioides HOM05D004372 ORTHO05D004331 1.3e-06 56.6 69 40.6
unitig_8.g2994 Utricularia gibba HOM05D003595 ORTHO05D004132 1.7e-06 56.2 57 50.9
Gohir.A11G311600 Gossypium hirsutum HOM05D003595 ORTHO05D004132 3.0e-06 55.5 96 42.7
MBI14_g04662_MAGBIO Magnolia biondii HOM05D004372 ORTHO05D004331 3.0e-06 55.5 68 36.8


User provided reference genes

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