Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 3.7e-110 401.7 230 100.0
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.8e-88 329.7 191 97.9
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.8e-88 329.7 191 97.9
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 1.6e-68 263.5 190 82.1
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 5.9e-68 261.5 190 78.9
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-67 260.4 189 80.4
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.1e-66 257.3 192 81.8
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.2e-66 255.4 192 75.0
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 6.8e-64 248.1 193 75.6
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 8.9e-64 247.7 190 69.5
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 8.9e-64 247.7 190 70.0
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 3.4e-63 245.7 191 73.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 5.7e-63 245.0 191 71.2
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 9.8e-63 244.2 190 70.5
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.3e-62 243.8 195 75.4
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 1.3e-62 243.8 195 73.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.4e-61 240.4 154 81.2
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.4e-61 239.6 143 86.0
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.4e-61 239.6 143 86.0
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 5.4e-61 238.4 199 75.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.7e-60 236.1 193 75.6
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.5e-60 235.7 153 82.4
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.5e-60 235.7 153 79.1
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 7.8e-60 234.6 190 72.1
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 5.0e-59 231.9 192 72.9
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.9e-58 229.9 151 76.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 2.5e-58 229.6 195 64.6
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 9.5e-58 227.6 133 83.5
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 4.7e-57 225.3 195 71.8
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 6.1e-57 224.9 152 77.0
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.0e-56 224.2 159 74.2
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 1.4e-56 223.8 189 69.3
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.8e-56 223.4 155 75.5
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 2.3e-56 223.0 197 67.0
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 5.2e-56 221.9 155 76.1
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 6.8e-56 221.5 190 70.5
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 8.9e-56 221.1 195 64.6
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 8.9e-56 221.1 191 69.6
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 8.9e-56 221.1 195 68.7
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.2e-55 220.7 198 61.6
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.5e-55 220.3 190 68.9
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 2.0e-55 219.9 193 69.9
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 4.4e-55 218.8 192 70.3
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 4.4e-55 218.8 190 65.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 7.5e-55 218.0 190 70.0
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 7.5e-55 218.0 148 75.0
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 1.3e-54 217.2 190 67.9
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 1.7e-54 216.9 153 75.8
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 2.2e-54 216.5 154 75.3
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.9e-54 216.1 152 73.7
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 3.7e-54 215.7 190 70.0
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.4e-53 213.8 159 73.0
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.9e-53 213.4 190 70.5
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.4e-53 213.0 190 66.3
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 2.4e-53 213.0 198 70.2
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 3.2e-53 212.6 190 70.5
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.2e-53 212.6 190 70.5
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 4.1e-53 212.2 194 68.0
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 4.1e-53 212.2 225 61.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 5.4e-53 211.8 190 67.9
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.4e-53 211.8 194 66.5
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 7.0e-53 211.5 190 68.9
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 7.0e-53 211.5 153 69.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 9.2e-53 211.1 190 70.0
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 9.2e-53 211.1 191 70.7
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.2e-53 211.1 190 67.4
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 9.2e-53 211.1 193 67.4
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.2e-53 211.1 193 67.4
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 9.2e-53 211.1 193 67.4
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 9.2e-53 211.1 195 69.2
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 1.2e-52 210.7 190 62.6
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.2e-52 210.7 191 67.5
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 1.2e-52 210.7 197 70.1
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.6e-52 210.3 191 68.6
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.6e-52 210.3 199 68.3
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 1.6e-52 210.3 154 75.3
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.6e-52 210.3 190 69.5
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.0e-52 209.9 150 74.0
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 2.7e-52 209.5 190 67.9
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 2.7e-52 209.5 190 67.9
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.7e-52 209.5 193 69.9
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.7e-52 209.5 200 70.5
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.5e-52 209.1 157 70.7
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 3.5e-52 209.1 157 70.7
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.5e-52 209.1 157 70.7
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 3.5e-52 209.1 192 68.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 4.6e-52 208.8 155 69.7
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.6e-52 208.8 191 70.2
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.6e-52 208.8 193 66.8
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 4.6e-52 208.8 193 71.0
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 4.6e-52 208.8 198 63.6
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 6.0e-52 208.4 199 68.3
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 6.0e-52 208.4 192 68.8
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 7.8e-52 208.0 190 68.9
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 7.8e-52 208.0 191 62.8
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 7.8e-52 208.0 192 65.1
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 1.0e-51 207.6 191 66.0
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.0e-51 207.6 191 67.0
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.3e-51 207.2 194 69.6
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 1.7e-51 206.8 159 71.1
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 6.6e-51 204.9 190 65.8
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 8.6e-51 204.5 193 64.2
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.5e-50 203.8 152 70.4
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 2.5e-50 203.0 192 62.0
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 9.5e-50 201.1 153 67.3
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 1.2e-49 200.7 162 71.0
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 1.6e-49 200.3 142 71.1
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.6e-49 200.3 154 70.1
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.1e-49 199.9 190 66.3
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 4.7e-49 198.7 154 69.5
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.8e-48 196.8 191 64.4
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 4.0e-48 195.7 140 72.1
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 8.9e-48 194.5 150 63.3
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 4.4e-47 192.2 143 68.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 6.4e-46 188.3 199 57.8
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 8.3e-46 188.0 154 64.9
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.2e-45 186.0 147 63.9
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 3.2e-45 186.0 190 63.7
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 4.6e-44 182.2 143 67.8
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.3e-43 180.6 148 60.8
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.7e-43 180.3 148 62.8
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 6.6e-43 178.3 148 60.1
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.5e-42 177.2 148 59.5
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 2.4e-37 159.8 153 56.2
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.3e-34 149.1 146 52.7
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 3.6e-33 146.0 144 58.3
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.8e-32 143.7 145 54.5
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.2e-28 131.0 154 48.1
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 2.7e-28 129.8 78 74.4
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.5e-26 124.0 75 78.7
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.5e-26 124.0 71 81.7
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 9.9e-23 111.3 112 59.8
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.3e-19 100.9 71 70.4
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 9.0e-16 88.2 71 57.7
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 1.6e-12 77.4 70 57.1
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.0e-12 75.5 58 60.3
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 3.0e-11 73.2 71 49.3


User provided reference genes

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