Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 3.4e-57 226.1 285 100.0
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.5e-55 219.9 285 82.5
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 1.1e-47 194.5 301 40.5
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.4e-47 194.1 284 39.4
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 1.9e-47 193.7 285 68.8
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 5.5e-47 192.2 290 39.3
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 9.3e-47 191.4 284 75.0
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 2.1e-46 190.3 284 63.7
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 2.7e-46 189.9 284 64.1
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 3.5e-46 189.5 284 74.6
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 6.0e-46 188.7 284 71.8
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 7.9e-46 188.3 284 63.4
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 1.0e-45 188.0 284 73.2
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.0e-45 186.4 284 50.7
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 3.9e-45 186.0 284 74.3
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 1.1e-44 184.5 284 73.6
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.1e-44 184.5 284 52.8
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 1.5e-44 184.1 284 73.9
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 4.3e-44 182.6 284 65.8
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 4.3e-44 182.6 94 89.4
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 5.7e-44 182.2 284 70.1
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 5.7e-44 182.2 284 51.8
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.4e-44 181.8 284 90.1
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 9.7e-44 181.4 284 64.8
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 9.7e-44 181.4 284 70.8
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 1.3e-43 181.0 284 63.0
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.3e-43 181.0 284 90.8
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 1.6e-43 180.6 284 65.5
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 2.2e-43 180.3 284 66.2
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 2.8e-43 179.9 284 64.8
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 2.8e-43 179.9 284 70.8
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 3.7e-43 179.5 284 64.4
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 8.2e-43 178.3 295 50.8
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 8.2e-43 178.3 284 90.5
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 8.2e-43 178.3 96 84.4
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 8.2e-43 178.3 284 62.0
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 1.4e-42 177.6 284 67.6
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 1.4e-42 177.6 284 71.8
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 1.8e-42 177.2 284 89.8
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.8e-42 177.2 284 90.1
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 2.4e-42 176.8 284 88.4
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 5.3e-42 175.6 96 82.3
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 6.9e-42 175.3 93 86.0
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 1.2e-41 174.5 94 83.0
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 1.5e-41 174.1 284 60.9
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 2.0e-41 173.7 284 71.5
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 2.0e-41 173.7 284 70.8
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 2.6e-41 173.3 284 71.1
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 3.4e-41 172.9 283 78.1
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 3.4e-41 172.9 266 48.5
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 3.4e-41 172.9 93 82.8
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 4.5e-41 172.6 285 61.4
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 4.5e-41 172.6 285 61.8
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 4.5e-41 172.6 284 68.7
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 7.7e-41 171.8 284 88.7
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.0e-40 171.4 96 77.1
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 1.3e-40 171.0 284 69.4
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 1.3e-40 171.0 92 80.4
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 2.2e-40 170.2 284 36.6
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 2.2e-40 170.2 284 63.0
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 2.2e-40 170.2 283 72.1
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 2.2e-40 170.2 90 84.4
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 2.2e-40 170.2 90 84.4
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 2.2e-40 170.2 90 84.4
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 2.9e-40 169.9 284 88.4
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 5.0e-40 169.1 284 72.5
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 5.0e-40 169.1 92 79.3
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 6.5e-40 168.7 92 79.3
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 8.5e-40 168.3 284 46.8
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 1.4e-39 167.5 92 79.3
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.9e-39 167.2 288 58.3
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 2.5e-39 166.8 93 77.4
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 4.2e-39 166.0 93 77.4
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 5.5e-39 165.6 284 62.0
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 7.2e-39 165.2 284 59.9
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.2e-39 165.2 93 80.6
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.2e-39 165.2 284 65.1
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 7.2e-39 165.2 113 69.0
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 1.6e-38 164.1 95 75.8
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 1.6e-38 164.1 96 75.0
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 2.1e-38 163.7 284 59.5
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 3.6e-38 162.9 91 80.2
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 4.6e-38 162.5 282 60.3
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 4.6e-38 162.5 284 70.1
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 4.6e-38 162.5 91 78.0
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 6.1e-38 162.2 284 59.5
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 7.9e-38 161.8 90 78.9
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 7.9e-38 161.8 283 79.5
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 1.0e-37 161.4 284 58.8
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 1.4e-37 161.0 91 78.0
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 2.3e-37 160.2 281 60.1
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 3.0e-37 159.8 284 67.6
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.1e-37 159.1 284 69.7
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 6.7e-37 158.7 284 87.0
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 8.8e-37 158.3 93 76.3
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 1.1e-36 157.9 285 61.1
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 1.5e-36 157.5 284 69.7
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.5e-36 157.5 284 69.7
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 1.5e-36 157.5 292 50.7
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 3.3e-36 156.4 284 58.5
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 3.3e-36 156.4 284 78.9
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 4.3e-36 156.0 284 58.5
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 5.7e-36 155.6 267 63.7
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 1.7e-35 154.1 97 72.2
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 1.7e-35 154.1 97 72.2
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 2.8e-35 153.3 90 74.4
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 2.8e-35 153.3 267 34.5
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 2.8e-35 153.3 284 56.3
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 3.7e-35 152.9 286 59.4
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.7e-35 152.9 284 68.7
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 4.8e-35 152.5 96 70.8
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 6.3e-35 152.1 96 70.8
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 1.1e-34 151.4 90 71.1
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.4e-34 151.0 92 71.7
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.4e-34 151.0 284 63.7
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.8e-34 150.6 141 52.5
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 2.4e-34 150.2 94 69.1
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 3.1e-34 149.8 284 65.1
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 4.1e-34 149.4 89 70.8
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 9.1e-34 148.3 92 70.7
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 1.5e-33 147.5 281 79.4
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 1.5e-33 147.5 282 83.0
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 3.4e-33 146.4 257 49.4
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 4.5e-33 146.0 256 35.2
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 7.7e-33 145.2 95 71.6
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 2.9e-32 143.3 257 93.0
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 5.0e-32 142.5 257 72.8
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 8.5e-32 141.7 258 68.6
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 1.9e-31 140.6 282 32.6
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 3.2e-31 139.8 257 48.2
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 5.5e-31 139.0 284 32.4
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 5.5e-31 139.0 90 68.9
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.2e-30 137.9 293 32.1
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 2.1e-30 137.1 76 78.9
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.7e-30 136.7 93 62.4
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 3.6e-30 136.3 90 68.9
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 3.6e-30 136.3 69 84.1
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.9e-30 135.2 284 84.9
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 7.9e-30 135.2 95 67.4
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 1.0e-29 134.8 281 69.0
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 1.0e-29 134.8 76 75.0
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.8e-29 134.0 95 62.1
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 8.8e-29 131.7 257 71.6
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 2.6e-28 130.2 96 62.5
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 9.7e-28 128.3 293 31.1
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 1.1e-26 124.8 83 67.5
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 1.1e-26 124.8 83 67.5
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 1.1e-26 124.8 69 79.7
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 4.5e-25 119.4 69 79.7
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.4e-23 114.4 94 58.5
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 4.2e-23 112.8 266 48.5
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 5.5e-23 112.5 295 29.8
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.6e-22 110.9 238 47.5
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 2.1e-22 110.5 96 57.3
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.4e-21 107.8 278 31.7
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 2.3e-21 107.1 95 48.4
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 9.7e-20 101.7 95 46.3
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 8.2e-19 98.6 88 47.7
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 4.1e-18 96.3 96 42.7
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 2.6e-17 93.6 75 58.7
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 5.0e-16 89.4 62 64.5
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 2.5e-15 87.0 223 52.0
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 5.5e-15 85.9 99 42.4
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 1.2e-14 84.7 98 40.8
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 3.6e-14 83.2 79 51.9
Nitab4.5_0010451g0020 Nicotiana tabacum HOM05D003773 ORTHO05D004377 1.8e-13 80.9 38 92.1
ECA232G0889 Erigeron canadensis HOM05D003773 ORTHO05D004377 2.3e-13 80.5 38 92.1
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.5e-12 77.8 96 43.8
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.5e-12 77.8 38 86.8
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 2.0e-12 77.4 37 89.2
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 4.4e-12 76.3 38 81.6
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 7.5e-12 75.5 38 84.2
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 2.8e-11 73.6 69 49.3
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 1.8e-10 70.9 42 73.8
Atru.chr6.919 Acer truncatum HOM05D003773 ORTHO05D004377 2.4e-10 70.5 38 81.6
A03p05440 Brassica napus HOM05D003773 ORTHO05D004377 3.1e-10 70.1 37 75.7
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 6.5e-08 62.4 29 86.2
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 5.5e-07 59.3 27 92.6
Actinidia36083 Actinidia chinensis HOM05D005049 ORTHO05D006032 1.6e-06 57.8 90 37.8
BcaB01g05424 Brassica carinata HOM05D000005 ORTHO05D000449 3.6e-06 56.6 28 85.7
CsaV3_7G003910 Cucumis sativus L. HOM05D003773 ORTHO05D004377 3.6e-06 56.6 40 65.0


User provided reference genes

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