Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.8e-134 481.9 232 100.0
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.0e-119 432.6 218 96.3
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 3.5e-92 342.0 220 78.6
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.3e-86 323.6 218 72.5
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 1.7e-83 313.2 242 68.2
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 3.6e-81 305.4 229 69.9
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.7e-78 295.4 220 68.6
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 1.2e-76 290.4 209 69.9
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.7e-75 286.6 221 66.5
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.0e-75 285.8 192 74.0
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 3.9e-75 285.4 227 64.8
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 5.0e-75 285.0 216 65.3
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 6.6e-75 284.6 216 63.9
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.2e-73 280.4 198 68.2
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 2.1e-73 279.6 206 66.0
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.1e-73 279.6 214 66.4
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 6.2e-73 278.1 234 61.5
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.3e-72 276.2 216 64.4
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 4.0e-72 275.4 216 63.9
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 6.8e-72 274.6 193 66.8
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 1.5e-71 273.5 222 61.7
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 2.6e-71 272.7 209 66.5
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 3.4e-71 272.3 187 70.6
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.3e-70 270.4 204 63.7
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.2e-70 269.6 207 64.3
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 2.9e-70 269.2 217 62.7
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.7e-70 268.9 239 57.7
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 6.4e-70 268.1 192 68.2
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.4e-69 266.2 211 62.1
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 2.4e-69 266.2 192 67.2
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 2.4e-69 266.2 209 63.2
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 3.2e-69 265.8 195 66.7
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 3.2e-69 265.8 195 66.7
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 9.2e-69 264.2 225 59.6
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 2.1e-68 263.1 211 62.1
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.7e-68 262.7 196 62.8
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 3.5e-68 262.3 208 60.1
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 6.0e-68 261.5 217 61.8
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.8e-68 261.2 234 60.7
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.3e-67 259.6 234 59.4
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 3.0e-67 259.2 208 59.6
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.0e-67 259.2 232 58.2
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 3.0e-67 259.2 211 60.2
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 3.9e-67 258.8 216 61.6
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 8.6e-67 257.7 216 59.3
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.5e-66 256.9 211 59.2
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.9e-66 256.5 201 61.2
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 4.3e-66 255.4 210 60.5
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 5.6e-66 255.0 211 59.2
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 5.6e-66 255.0 210 65.2
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 1.6e-65 253.4 209 60.8
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 1.6e-65 253.4 209 60.8
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.6e-65 253.4 202 63.4
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 1.6e-65 253.4 215 60.0
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 2.8e-65 252.7 207 58.0
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 3.6e-65 252.3 221 62.9
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 3.6e-65 252.3 187 65.8
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 8.1e-65 251.1 204 60.8
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.4e-64 249.6 235 55.7
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 6.8e-64 248.1 192 61.5
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 8.9e-64 247.7 198 61.6
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.2e-63 247.3 228 61.0
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 1.2e-63 247.3 220 59.1
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 2.0e-63 246.5 172 67.4
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 3.4e-63 245.7 198 63.1
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.7e-62 243.4 219 59.4
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 1.7e-62 243.4 219 58.9
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 1.7e-62 243.4 196 61.2
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 3.8e-62 242.3 211 57.8
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.8e-62 242.3 215 59.1
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.1e-61 240.7 208 58.2
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.1e-61 240.7 225 55.1
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 1.4e-61 240.4 230 60.0
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 2.4e-61 239.6 167 71.3
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 3.2e-61 239.2 160 76.2
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.6e-60 236.9 210 60.0
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 6.0e-60 235.0 209 61.7
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 7.8e-60 234.6 228 54.4
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 5.6e-58 228.4 214 56.1
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.5e-55 220.3 197 56.9
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 4.4e-55 218.8 215 55.8
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 4.4e-55 218.8 196 54.6
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.4e-53 213.0 192 57.3
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.6e-52 210.3 328 39.6
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.6e-52 210.3 156 66.7
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 7.8e-52 208.0 221 47.5
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 3.9e-51 205.7 191 56.0
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.3e-49 200.7 157 61.8
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 4.8e-49 198.7 204 49.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 4.8e-49 198.7 162 60.5
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.3e-46 190.7 163 62.0
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 6.4e-46 188.3 155 60.6
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.4e-45 187.2 151 62.3
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.9e-45 186.8 192 52.1
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 3.2e-45 186.0 146 64.4
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.5e-42 177.2 152 57.9
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.9e-42 176.8 133 64.7
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 2.5e-42 176.4 152 57.9
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 9.6e-42 174.5 249 41.0
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.3e-41 174.1 233 46.4
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.3e-41 174.1 233 46.4
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 1.3e-41 174.1 120 67.5
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 2.1e-41 173.3 152 57.2
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 2.1e-41 173.3 152 57.2
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 3.8e-38 162.5 139 61.2
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.4e-37 160.6 129 58.1
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 4.3e-34 149.1 94 69.1
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 6.2e-33 145.2 206 40.8
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.4e-32 143.3 216 40.7
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 9.3e-29 131.3 121 55.4
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 3.5e-28 129.4 108 59.3
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 1.9e-26 123.6 100 60.0
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 1.6e-25 120.6 133 51.1
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 2.2e-25 120.2 77 72.7
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 2.2e-25 120.2 71 71.8
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 8.2e-25 118.2 100 58.0
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 1.1e-24 117.9 124 50.8
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 9.0e-24 114.8 154 43.5
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 6.5e-22 108.6 180 35.0
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 6.5e-22 108.6 98 55.1
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.4e-21 107.5 99 55.6
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 7.2e-21 105.1 65 73.8
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-20 104.4 164 40.2
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 7.9e-20 101.7 109 47.7
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 2.3e-19 100.1 55 76.4
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 2.2e-17 93.6 60 70.0
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.2e-17 93.6 65 63.1
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.2e-14 83.6 46 80.4
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 2.3e-11 73.6 64 54.7
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 4.5e-07 59.3 33 78.8


User provided reference genes

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