Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007217 Camellia sinensis var. sinensis HOM05D004968 ORTHO05D005922 1.7e-140 502.7 253 100.0
Rhsim05G0075100 Rhododendron simsii HOM05D004968 ORTHO05D005922 1.5e-96 356.7 254 72.4
Actinidia17822 Actinidia chinensis HOM05D004968 ORTHO05D005922 8.2e-95 350.9 254 72.4
Dinv23542 Davidia involucrata HOM05D004968 ORTHO05D005922 2.6e-85 319.3 254 67.7
Rhsim11G0174600 Rhododendron simsii HOM05D004968 ORTHO05D005922 3.0e-81 305.8 252 65.1
QL11p042637 Quercus lobata HOM05D004968 ORTHO05D005922 3.1e-78 295.8 256 62.1
QL11p043149 Quercus lobata HOM05D004968 ORTHO05D005922 3.1e-78 295.8 256 62.1
GSVIVG01031935001 Vitis vinifera HOM05D004968 ORTHO05D005922 1.3e-76 290.4 254 61.0
Eucgr.F03779 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.4e-75 287.0 241 63.1
Gohir.D12G018300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.5e-75 286.2 256 59.4
vmacro17504 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 9.4e-75 284.3 236 64.8
vmacro17503 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 2.7e-74 282.7 233 65.7
FvH4_2g08440 Fragaria vesca HOM05D004968 ORTHO05D005922 3.6e-74 282.3 258 58.1
Potri.004G152800 Populus trichocarpa HOM05D004968 ORTHO05D005922 6.1e-74 281.6 255 56.5
Prupe.8G100600 Prunus persica HOM05D004968 ORTHO05D005922 7.9e-74 281.2 258 59.7
Gohir.A12G017700 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.8e-73 280.0 256 58.6
TWI31G0993 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 2.3e-73 279.6 256 57.8
Ciclev10028976m.g Citrus clementina HOM05D004968 ORTHO05D005922 3.9e-73 278.9 255 58.0
PGSC0003DMG400024156 Solanum tuberosum HOM05D004968 ORTHO05D005922 1.1e-72 277.3 253 56.9
TWI79G0651 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 1.5e-72 276.9 255 57.3
COL.COLO4_32438 Corchorus olitorius HOM05D004968 ORTHO05D005922 2.0e-72 276.6 257 56.8
Gorai.008G018600 Gossypium raimondii HOM05D004968 ORTHO05D005922 5.7e-72 275.0 253 59.3
Thecc.02G124000 Theobroma cacao HOM05D004968 ORTHO05D005922 7.4e-72 274.6 256 57.4
MD10G1078800 Malus domestica HOM05D004968 ORTHO05D005922 9.7e-72 274.2 251 60.6
DCAR_022106 Daucus carota HOM05D004968 ORTHO05D005922 3.7e-71 272.3 255 57.3
RcHm_v2.0_Chr6g0263721 Rosa chinensis HOM05D004968 ORTHO05D005922 4.8e-71 271.9 259 56.0
TWI75G0648 Tripterygium wilfordii HOM05D004968 ORTHO05D005922 6.3e-71 271.6 254 56.7
Lj5C198G20 Lonicera japonica HOM05D004968 ORTHO05D005922 1.1e-70 270.8 251 56.2
Sopen06g020960 Solanum pennellii HOM05D004968 ORTHO05D005922 5.3e-70 268.5 253 56.1
Manes.15G164800 Manihot esculenta HOM05D004968 ORTHO05D005922 3.5e-69 265.8 256 52.7
PGR119G1160 Punica granatum HOM05D004968 ORTHO05D005922 7.7e-69 264.6 243 57.6
CANSAT54G1571 Cannabis sativa HOM05D004968 ORTHO05D005922 1.0e-68 264.2 258 53.9
Cc02_g17750 Coffea canephora HOM05D004968 ORTHO05D005922 1.0e-68 264.2 248 54.0
Gohir.D13G047300 Gossypium hirsutum HOM05D004968 ORTHO05D005922 1.3e-68 263.8 257 57.2
ECA240G2790 Erigeron canadensis HOM05D004968 ORTHO05D005922 1.1e-67 260.8 253 51.8
MSTRG.17529 Avicennia marina HOM05D004968 ORTHO05D005922 1.9e-67 260.0 246 52.8
Gorai.013G052900 Gossypium raimondii HOM05D004968 ORTHO05D005922 1.9e-67 260.0 258 57.0
ECA234G4136 Erigeron canadensis HOM05D004968 ORTHO05D005922 4.2e-67 258.8 254 53.1
ClCG09G016910 Citrullus lanatus HOM05D004968 ORTHO05D005922 2.1e-66 256.5 256 53.1
Nitab4.5_0000959g0010 Nicotiana tabacum HOM05D004968 ORTHO05D005922 2.1e-66 256.5 249 54.6
Gohir.A13G048800 Gossypium hirsutum HOM05D004968 ORTHO05D005922 2.7e-66 256.1 258 57.0
CAN.G62.20 Capsicum annuum HOM05D004968 ORTHO05D005922 4.7e-66 255.4 260 54.6
Ca_24432_v3 Cicer arietinum L. HOM05D004968 ORTHO05D005922 1.8e-65 253.4 256 53.1
DCAR_028995 Daucus carota HOM05D004968 ORTHO05D005922 1.8e-65 253.4 238 53.8
Sed0008504 Sechium edule HOM05D004968 ORTHO05D005922 3.0e-65 252.7 255 54.1
Nitab4.5_0000618g0170 Nicotiana tabacum HOM05D004968 ORTHO05D005922 4.0e-65 252.3 234 57.3
HanXRQChr10g0307261 Helianthus annuus HOM05D004968 ORTHO05D005922 6.7e-65 251.5 253 50.2
Manes.17G099900 Manihot esculenta HOM05D004968 ORTHO05D005922 6.7e-65 251.5 236 55.5
Migut.B00251 Erythranthe guttata HOM05D004968 ORTHO05D005922 8.8e-65 251.1 252 51.2
Lsat_1_v5_gn_9_109460 Lactuca sativa HOM05D004968 ORTHO05D005922 1.5e-64 250.4 264 48.1
Nn5g29559 Nelumbo nucifera HOM05D004968 ORTHO05D005922 1.5e-64 250.4 263 51.7
MSTRG.16797 Avicennia marina HOM05D004968 ORTHO05D005922 2.6e-64 249.6 230 54.8
Aqoxy2G00255 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.2e-63 246.5 234 55.6
AUR62032493 Chenopodium quinoa HOM05D004968 ORTHO05D005922 6.3e-63 245.0 239 53.6
THA.LOC104818761 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 6.3e-63 245.0 239 52.3
SalBow5G1254 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.4e-62 243.8 248 50.4
SalBow6G2079 Salvia bowleyana HOM05D004968 ORTHO05D005922 1.4e-62 243.8 255 49.4
AUR62011341 Chenopodium quinoa HOM05D004968 ORTHO05D005922 2.4e-62 243.0 240 52.9
Lsat_1_v5_gn_5_117961 Lactuca sativa HOM05D004968 ORTHO05D005922 2.4e-62 243.0 253 49.4
CsaV3_2G036400 Cucumis sativus L. HOM05D004968 ORTHO05D005922 3.1e-62 242.7 256 53.1
Haze_02366 Corylus avellana HOM05D004968 ORTHO05D005922 5.3e-62 241.9 227 57.7
EL10Ac9g21742 Beta vulgaris HOM05D004968 ORTHO05D005922 9.1e-62 241.1 241 52.3
THA.LOC104823527 Tarenaya hassleriana HOM05D004968 ORTHO05D005922 9.1e-62 241.1 256 50.0
MELO3C021891.2 Cucumis melo HOM05D004968 ORTHO05D005922 1.6e-61 240.4 258 52.7
AUR62016719 Chenopodium quinoa HOM05D004968 ORTHO05D005922 4.5e-61 238.8 240 52.5
Oeu020768.3 Olea europaea HOM05D004968 ORTHO05D005922 5.9e-61 238.4 224 56.2
Ah.01g019530 Amaranthus hybridus HOM05D004968 ORTHO05D005922 7.7e-61 238.0 246 50.8
FAN24G2241 Fragaria x ananassa HOM05D004968 ORTHO05D005922 1.3e-60 237.3 228 55.7
Thhalv10008545m.g Eutrema salsugineum HOM05D004968 ORTHO05D005922 2.9e-60 236.1 240 50.4
Carub.0001s1141 Capsella rubella HOM05D004968 ORTHO05D005922 6.5e-60 235.0 254 48.4
A06p08310 Brassica napus HOM05D004968 ORTHO05D005922 1.9e-59 233.4 256 48.8
TPR.G37890 Trifolium pratense HOM05D004968 ORTHO05D005922 1.9e-59 233.4 258 49.6
Lalb_Chr16g0376541 Lupinus albus HOM05D004968 ORTHO05D005922 2.5e-59 233.0 254 50.8
Lj5g0027841 Lotus japonicus HOM05D004968 ORTHO05D005922 3.2e-59 232.6 239 51.9
Hund06225 Selenicereus undatus HOM05D004968 ORTHO05D005922 3.2e-59 232.6 251 49.4
Duzib248G0873 Durio zibethinus HOM05D004968 ORTHO05D005922 5.5e-59 231.9 256 50.8
Medtr5g007260 Medicago truncatula HOM05D004968 ORTHO05D005922 5.5e-59 231.9 258 50.0
LjContig00222g0024344 Lotus japonicus HOM05D004968 ORTHO05D005922 7.2e-59 231.5 242 51.7
Eucgr.L02365 Eucalyptus grandis HOM05D004968 ORTHO05D005922 1.6e-58 230.3 210 60.0
BraA06t24029Z Brassica rapa HOM05D001191 ORTHO05D000979 2.1e-58 229.9 256 48.8
MBI15_g22768_MAGBIO Magnolia biondii HOM05D004968 ORTHO05D005922 2.7e-58 229.6 235 52.8
A08p33240 Brassica napus HOM05D004968 ORTHO05D005922 3.6e-58 229.2 255 46.7
Psat2g154960 Pisum sativum HOM05D004968 ORTHO05D005922 8.0e-58 228.0 242 51.2
CiPaw.05G062800 Carya illinoinensis HOM05D004968 ORTHO05D005922 1.8e-57 226.9 191 63.9
Aa31LG2G8870 Aethionema arabicum HOM05D004968 ORTHO05D005922 2.3e-57 226.5 255 47.8
Aqoxy214s001 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.3e-57 226.5 238 51.3
Aqoxy2G00971 Aquilegia oxysepala HOM05D004968 ORTHO05D005922 2.3e-57 226.5 238 51.3
AL1G22930 Arabidopsis lyrata HOM05D004968 ORTHO05D005922 2.3e-57 226.5 254 46.9
BcaC05g25044 Brassica carinata HOM05D004968 ORTHO05D005922 2.3e-57 226.5 254 47.2
Phvul.002G041200 Phaseolus vulgaris HOM05D004968 ORTHO05D005922 2.3e-57 226.5 241 51.5
TPR.G17161 Trifolium pratense HOM05D004968 ORTHO05D005922 2.3e-57 226.5 236 52.5
Psat2g189320 Pisum sativum HOM05D004968 ORTHO05D005922 3.0e-57 226.1 238 50.4
BraA08t35243Z Brassica rapa HOM05D004968 ORTHO05D005922 4.0e-57 225.7 255 46.3
unitig_60.g25856 Utricularia gibba HOM05D004968 ORTHO05D005922 4.0e-57 225.7 245 48.6
BcaB03g13234 Brassica carinata HOM05D004968 ORTHO05D005922 8.8e-57 224.6 255 45.9
Solyc06g060810.3 Solanum lycopersicum HOM05D004968 ORTHO05D005922 1.2e-56 224.2 253 49.4
Glyma.01G233700 Glycine max HOM05D004968 ORTHO05D005922 1.5e-56 223.8 242 51.7
AT1G11755 Arabidopsis thaliana HOM05D004968 ORTHO05D005922 2.0e-56 223.4 254 46.5
C08p14950 Brassica napus HOM05D004968 ORTHO05D005922 2.0e-56 223.4 257 47.5
BolC8t49124H Brassica oleracea HOM05D004968 ORTHO05D005922 2.0e-56 223.4 257 47.5
BcaB03g13233 Brassica carinata HOM05D004968 ORTHO05D005922 2.6e-56 223.0 257 47.5
CARHR012070 Cardamine hirsuta HOM05D004968 ORTHO05D005922 2.6e-56 223.0 255 47.5
Peaxi162Scf00190g01218 Petunia axillaris HOM05D004968 ORTHO05D005922 2.6e-56 223.0 227 53.3
Zm00001eb008090 Zea mays HOM05D004968 ORTHO05D005922 5.7e-56 221.9 240 51.2
C05p09870 Brassica napus HOM05D001191 ORTHO05D000979 7.5e-56 221.5 255 47.1
BolC5t29726H Brassica oleracea HOM05D001191 ORTHO05D000979 7.5e-56 221.5 255 47.1
Sp1g10370 Schrenkiella parvula HOM05D004968 ORTHO05D005922 1.7e-55 220.3 254 46.1
Medtr5g007330 Medicago truncatula HOM05D004968 ORTHO05D005922 1.1e-54 217.6 259 49.0
vmacro02126 Vaccinium macrocarpon HOM05D004968 ORTHO05D005922 3.1e-54 216.1 208 57.7
Glyma.11G009100 Glycine max HOM05D004968 ORTHO05D005922 7.0e-54 214.9 244 49.6
Hma1.2p1_1375F.1_g278980 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 9.1e-54 214.5 187 61.5
Hma1.2p1_3179F.1_g333693 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 9.1e-54 214.5 187 61.5
TAR628G0550 Trochodendron aralioides HOM05D004968 ORTHO05D005922 9.1e-54 214.5 212 54.7
TAR628G1407 Trochodendron aralioides HOM05D004968 ORTHO05D005922 9.1e-54 214.5 212 54.7
PSO210G6272 Papaver somniferum HOM05D004968 ORTHO05D005922 1.2e-53 214.2 248 50.4
CDE08G1236 Ceratophyllum demersum HOM05D004968 ORTHO05D005922 2.0e-53 213.4 244 47.5
Cpa.g.sc62.129 Carica papaya HOM05D004968 ORTHO05D005922 7.7e-53 211.5 183 60.7
Sc08g0000410 Simmondsia chinensis HOM05D004968 ORTHO05D005922 1.0e-52 211.1 226 51.8
PSO210G6102 Papaver somniferum HOM05D004968 ORTHO05D005922 2.9e-52 209.5 239 49.4
Aa31LG1G3000 Aethionema arabicum HOM05D004968 ORTHO05D005922 1.5e-51 207.2 234 48.3
Os03g0197000 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 3.3e-51 206.1 248 46.4
ATR0733G063 Amborella trichopoda HOM05D004968 ORTHO05D005922 5.5e-51 205.3 253 44.3
Lalb_Chr05g0211211 Lupinus albus HOM05D004968 ORTHO05D005922 3.6e-50 202.6 242 50.0
TAR376G0049 Trochodendron aralioides HOM05D004968 ORTHO05D005922 9.8e-48 194.5 211 51.2
HPP92_024488 Vanilla planifolia HOM05D004968 ORTHO05D005922 9.8e-48 194.5 234 46.6
Atru.chr5.2990 Acer truncatum HOM05D004968 ORTHO05D005922 2.8e-47 193.0 168 63.1
arahy.Tifrunner.gnm1.ann1.GI2C3C Arachis hypogaea HOM05D004968 ORTHO05D005922 4.9e-47 192.2 227 46.7
Os02g0197700 Oryza sativa ssp. japonica HOM05D004968 ORTHO05D005922 5.4e-46 188.7 241 44.0
SHI05416 Sapria himalayana HOM05D004968 ORTHO05D005922 7.0e-46 188.3 209 46.9
HanXRQChr14g0443031 Helianthus annuus HOM05D004968 ORTHO05D005922 1.0e-44 184.5 237 43.5
SGA_v2.0_scaffold68G22950 Striga asiatica HOM05D004968 ORTHO05D005922 1.5e-43 180.6 261 41.0
HPP92_014277 Vanilla planifolia HOM05D004968 ORTHO05D005922 7.3e-43 178.3 193 49.2
VMungo1309G1500 Vigna mungo HOM05D004968 ORTHO05D005922 1.6e-42 177.2 239 45.2
SEGI_04576 Sequoiadendron giganteum HOM05D004968 ORTHO05D005922 9.2e-38 161.4 251 38.2
arahy.Tifrunner.gnm1.ann1.UWQD3U Arachis hypogaea HOM05D004968 ORTHO05D005922 2.7e-37 159.8 217 43.3
Actinidia26757 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.2e-34 151.0 121 68.6
DCAR_022108 Daucus carota HOM05D004968 ORTHO05D005922 2.4e-30 136.7 98 65.3
SGA_v2.0_scaffold58G20551 Striga asiatica HOM05D004968 ORTHO05D005922 5.4e-30 135.6 164 46.3
VMungo1309G3063 Vigna mungo HOM05D004968 ORTHO05D005922 7.0e-30 135.2 169 48.5
Hma1.2p1_1375F.1_g278990 Hydrangea macrophylla HOM05D004968 ORTHO05D005922 3.6e-26 122.9 93 65.6
Prupe.8G100800 Prunus persica HOM05D004968 ORTHO05D005922 1.4e-25 120.9 143 52.4
Cc02_g20810 Coffea canephora HOM05D004968 ORTHO05D005922 1.5e-24 117.5 103 57.3
AagrBONN_evm.TU.Sc2ySwM_117.3108 Anthoceros agrestis HOM05D004968 ORTHO05D005922 1.3e-23 114.4 234 35.0
Dinv42083 Davidia involucrata HOM05D004968 ORTHO05D005922 4.9e-23 112.5 135 48.9
FAN20G2519 Fragaria x ananassa HOM05D004968 ORTHO05D005922 2.1e-21 107.1 87 59.8
SMO351G0289 Selaginella moellendorffii HOM05D004968 ORTHO05D005922 4.6e-21 105.9 247 31.6
TPR.G17189 Trifolium pratense HOM05D004968 ORTHO05D005922 7.8e-21 105.1 142 45.1
Lsat_1_v5_gn_2_61580 Lactuca sativa HOM05D004968 ORTHO05D005922 3.0e-20 103.2 148 41.9
Mapoly0014s0198 Marchantia polymorpha HOM05D004968 ORTHO05D005922 6.2e-18 95.5 156 34.0
Lsat_1_v5_gn_0_28960 Lactuca sativa HOM05D004968 ORTHO05D005922 5.2e-17 92.4 80 58.8
Actinidia30740 Actinidia chinensis HOM05D004968 ORTHO05D005922 1.3e-12 77.8 60 70.0


User provided reference genes

Program Settings