Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 0.0e+00 1088.9 595 100.0
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 0.0e+00 1077.8 600 98.7
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 7.8e-197 691.0 491 76.4
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 5.4e-190 668.3 601 67.6
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 2.8e-186 656.0 622 62.4
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 5.3e-185 651.7 626 62.0
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 2.8e-178 629.4 640 60.0
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 1.8e-172 610.1 624 61.9
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 6.7e-172 608.2 623 58.7
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 2.4e-169 599.7 596 60.6
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 5.3e-169 598.6 623 60.4
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 3.2e-166 589.3 607 60.5
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 3.2e-166 589.3 604 60.1
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 1.1e-163 580.9 616 58.4
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 2.2e-162 576.6 616 57.6
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 4.8e-162 575.5 619 57.8
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.8e-162 575.5 621 57.2
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 1.1e-161 574.3 621 58.8
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.0e-161 571.2 633 56.4
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 1.5e-160 570.5 688 55.2
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 7.7e-160 568.2 640 56.4
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 3.8e-159 565.8 621 56.7
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.0e-159 565.5 635 57.3
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 1.4e-158 563.9 596 58.4
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 2.5e-158 563.1 608 58.7
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 4.2e-158 562.4 614 57.2
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 5.5e-158 562.0 643 55.7
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 4.6e-157 558.9 609 58.5
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 6.1e-157 558.5 642 55.3
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 2.5e-155 553.1 606 58.4
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 5.7e-155 552.0 706 50.8
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 2.2e-154 550.1 643 54.9
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.1e-153 547.7 624 57.2
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 3.1e-153 546.2 633 55.5
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.1e-153 545.8 654 55.2
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 1.5e-152 543.9 661 54.6
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 4.5e-152 542.3 622 55.1
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 7.7e-152 541.6 612 57.2
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 1.4e-148 530.8 589 60.3
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 5.1e-148 528.9 586 55.8
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 2.6e-147 526.6 465 64.5
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 7.4e-147 525.0 618 54.0
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 3.5e-144 516.2 483 62.7
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 4.5e-144 515.8 620 55.5
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 5.5e-142 508.8 622 53.9
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 5.5e-142 508.8 669 52.2
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.7e-141 506.5 492 61.2
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 5.2e-140 502.3 482 63.3
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 1.5e-139 500.7 463 62.6
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 3.3e-139 499.6 693 49.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.7e-138 497.3 673 50.2
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 2.8e-138 496.5 603 54.7
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 6.3e-138 495.4 603 52.9
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 4.1e-137 492.7 500 60.0
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 5.3e-137 492.3 660 51.1
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 3.5e-136 489.6 644 52.0
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 2.2e-135 486.9 605 53.7
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 2.9e-135 486.5 534 56.6
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 5.0e-135 485.7 475 60.8
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 7.2e-134 481.9 636 49.8
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.6e-133 480.7 602 53.0
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.7e-133 479.9 760 47.0
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 4.7e-133 479.2 760 47.0
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 6.1e-133 478.8 634 51.7
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 4.0e-132 476.1 571 55.2
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.3e-130 471.1 496 58.5
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 1.4e-129 467.6 536 53.5
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 1.2e-128 464.5 577 53.6
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.2e-128 464.5 525 55.2
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.2e-128 464.5 607 53.0
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 3.8e-127 459.5 602 49.2
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 8.5e-127 458.4 594 51.3
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 8.5e-127 458.4 593 52.3
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.6e-125 454.1 608 47.5
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.7e-125 453.4 388 66.5
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 1.4e-124 451.1 654 46.3
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.5e-123 447.6 550 54.7
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 1.3e-122 444.5 595 51.4
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 2.4e-121 440.3 595 51.1
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 3.1e-121 439.9 593 51.4
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 4.1e-121 439.5 579 50.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 7.7e-120 435.3 623 49.6
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 5.0e-119 432.6 484 54.3
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 1.9e-118 430.6 611 49.3
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 6.1e-117 425.6 653 45.8
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 3.0e-116 423.3 671 43.5
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 2.4e-113 413.7 592 50.5
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 2.4e-113 413.7 592 50.5
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 1.6e-112 411.0 592 50.2
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 7.8e-112 408.7 673 42.2
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 7.5e-107 392.1 792 39.5
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.7e-103 380.9 538 48.0
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 3.3e-102 376.7 348 63.5
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.1e-100 370.2 391 60.9
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 3.1e-100 370.2 391 60.9
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 4.1e-97 359.8 396 56.6
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 4.6e-96 356.3 416 55.8
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 8.1e-93 345.5 601 40.6
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.9e-86 324.3 287 60.3
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 4.0e-84 316.6 258 67.1
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 8.4e-82 308.9 610 39.5
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 8.7e-79 298.9 362 56.9
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.8e-77 293.1 308 54.2
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.4e-73 281.6 243 64.6
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 4.6e-72 276.6 248 65.7
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.5e-70 271.6 609 36.0
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 5.6e-62 243.0 361 48.8
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.0e-58 232.3 178 70.8
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.1e-56 224.6 367 46.0
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 4.6e-56 223.4 449 37.4
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 9.6e-54 215.7 238 51.7
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 1.9e-46 191.4 237 54.4
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 1.1e-41 175.6 176 56.2
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 1.3e-34 152.1 130 63.1
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 5.2e-31 140.2 103 69.9
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 8.8e-31 139.4 194 47.4
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 7.4e-30 136.3 210 41.4
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 2.4e-28 131.3 103 67.0
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 4.2e-25 120.6 263 36.5
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 4.8e-21 107.1 355 27.3
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 5.9e-19 100.1 226 37.6
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.7e-18 98.6 165 42.4
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 4.7e-16 90.5 70 68.6
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 8.8e-15 86.3 158 39.9
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 8.3e-13 79.7 65 63.1
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 9.1e-12 76.3 106 44.3
Actinidia38836 Actinidia chinensis HOM05D006007 ORTHO05D007518 4.5e-11 73.9 68 58.8
Peaxi162Scf00991g00335 Petunia axillaris HOM05D006007 ORTHO05D007518 2.8e-08 64.7 115 50.4
Oeu051017.1 Olea europaea HOM05D020362 ORTHO05D030297 2.3e-07 61.6 148 38.5


User provided reference genes

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