Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007201 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 1.8e-202 709.1 380 100.0
Dinv14175 Davidia involucrata HOM05D004231 ORTHO05D004814 3.6e-163 578.6 379 84.7
Actinidia17992 Actinidia chinensis HOM05D004231 ORTHO05D004814 4.0e-162 575.1 372 86.6
Hma1.2p1_0652F.1_g195880 Hydrangea macrophylla HOM05D004231 ORTHO05D004814 1.7e-152 543.1 384 79.2
Nitab4.5_0000783g0100 Nicotiana tabacum HOM05D004231 ORTHO05D004814 2.3e-149 532.7 340 84.4
CSS0030147 Camellia sinensis var. sinensis HOM05D004231 ORTHO05D004814 3.0e-149 532.3 388 78.6
Oeu005953.1 Olea europaea HOM05D004231 ORTHO05D004814 3.0e-149 532.3 385 77.1
Sabra04G0139300 Salix brachista HOM05D004231 ORTHO05D004814 6.9e-146 521.2 380 76.1
Manes.01G017200 Manihot esculenta HOM05D004231 ORTHO05D004814 9.0e-146 520.8 379 76.3
Cfa005374 Carpinus fangiana HOM05D004231 ORTHO05D004814 1.2e-145 520.4 364 76.6
Potri.009G168400 Populus trichocarpa HOM05D004231 ORTHO05D004814 3.4e-145 518.8 380 75.5
MSTRG.25000 Avicennia marina HOM05D004231 ORTHO05D004814 4.4e-145 518.5 384 76.0
Peaxi162Scf00362g00110 Petunia axillaris HOM05D004231 ORTHO05D004814 4.4e-145 518.5 326 84.4
Potri.004G207000 Populus trichocarpa HOM05D004231 ORTHO05D004814 5.8e-145 518.1 380 76.3
SGA_v2.0_scaffold36G14389 Striga asiatica HOM05D004231 ORTHO05D004814 7.6e-145 517.7 377 75.1
Lsat_1_v5_gn_8_121420 Lactuca sativa HOM05D004231 ORTHO05D004814 3.8e-144 515.4 382 74.9
CiPaw.06G115200 Carya illinoinensis HOM05D004231 ORTHO05D004814 4.9e-144 515.0 364 76.9
MD10G1142000 Malus domestica HOM05D004231 ORTHO05D004814 4.9e-144 515.0 383 74.2
RhsimUnG0022900 Rhododendron simsii HOM05D004231 ORTHO05D004814 8.4e-144 514.2 386 74.9
ECA233G1094 Erigeron canadensis HOM05D004231 ORTHO05D004814 1.1e-143 513.8 367 76.6
PGSC0003DMG400014663 Solanum tuberosum HOM05D000109 ORTHO05D004814 1.4e-143 513.5 378 75.1
Nn7g36283 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.9e-143 513.1 382 74.3
Prupe.8G180500 Prunus persica HOM05D004231 ORTHO05D004814 3.2e-143 512.3 383 73.9
Sopen01g054320 Solanum pennellii HOM05D004231 ORTHO05D004814 4.2e-143 511.9 378 74.3
QL05p043527 Quercus lobata HOM05D004231 ORTHO05D004814 1.6e-142 510.0 382 74.1
CANSAT25G0301 Cannabis sativa HOM05D004231 ORTHO05D004814 2.7e-142 509.2 364 76.1
CsaV3_7G001970 Cucumis sativus L. HOM05D004231 ORTHO05D004814 3.5e-142 508.8 380 73.4
Migut.N00847 Erythranthe guttata HOM05D004231 ORTHO05D004814 4.6e-142 508.4 325 83.1
HanXRQChr16g0515121 Helianthus annuus HOM05D004231 ORTHO05D004814 4.6e-142 508.4 342 80.4
FvH4_2g16830 Fragaria vesca HOM05D004231 ORTHO05D004814 2.3e-141 506.1 379 73.9
SalBow7G0905 Salvia bowleyana HOM05D004231 ORTHO05D004814 2.3e-141 506.1 347 79.5
TWI75G1214 Tripterygium wilfordii HOM05D004231 ORTHO05D004814 2.3e-141 506.1 378 72.2
PGSC0003DMG400025309 Solanum tuberosum HOM05D004231 ORTHO05D004814 3.0e-141 505.8 336 80.7
MELO3C015708.2 Cucumis melo HOM05D004231 ORTHO05D004814 3.9e-141 505.4 380 72.9
Sopen04g003940 Solanum pennellii HOM05D004231 ORTHO05D004814 3.9e-141 505.4 371 75.7
SGA_v2.0_scaffold172G39001 Striga asiatica HOM05D004231 ORTHO05D004814 3.9e-141 505.4 382 74.9
Solyc04g008760.3 Solanum lycopersicum HOM05D004231 ORTHO05D004814 5.1e-141 505.0 375 75.2
RcHm_v2.0_Chr6g0280961 Rosa chinensis HOM05D004231 ORTHO05D004814 3.3e-140 502.3 383 74.2
ClCG02G003360 Citrullus lanatus HOM05D004231 ORTHO05D004814 4.3e-140 501.9 380 72.1
FAN15G0610 Fragaria x ananassa HOM05D004231 ORTHO05D004814 4.3e-140 501.9 379 72.6
LjContig00081g0001175 Lotus japonicus HOM05D004231 ORTHO05D004814 4.3e-140 501.9 345 78.6
Sed0021373 Sechium edule HOM05D004231 ORTHO05D004814 3.6e-139 498.8 385 73.2
Cc11_g00240 Coffea canephora HOM05D004231 ORTHO05D004814 4.8e-139 498.4 366 76.5
arahy.Tifrunner.gnm1.ann1.9M6UE0 Arachis hypogaea HOM05D004231 ORTHO05D004814 1.1e-138 497.3 344 78.2
Sed0027682 Sechium edule HOM05D004231 ORTHO05D004814 1.1e-138 497.3 367 74.4
Ca_10777_v3 Cicer arietinum L. HOM05D004231 ORTHO05D004814 1.8e-138 496.5 346 77.7
Duzib052G0175 Durio zibethinus HOM05D004231 ORTHO05D004814 1.8e-138 496.5 359 74.4
Nn2g15251 Nelumbo nucifera HOM05D004231 ORTHO05D004814 1.8e-138 496.5 382 74.1
FAN24G0296 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.9e-138 494.6 372 73.4
arahy.Tifrunner.gnm1.ann1.3XUX0K Arachis hypogaea HOM05D004231 ORTHO05D004814 9.0e-138 494.2 341 78.6
ECA236G1252 Erigeron canadensis HOM05D000103 ORTHO05D000049 1.2e-137 493.8 322 81.4
CiPaw.05G093400 Carya illinoinensis HOM05D004231 ORTHO05D004814 1.5e-137 493.4 357 74.5
Ciclev10028700m.g Citrus clementina HOM05D004231 ORTHO05D004814 3.4e-137 492.3 365 72.9
CAN.G5871.1 Capsicum annuum HOM05D004231 ORTHO05D004814 7.6e-137 491.1 368 72.6
PGR042G2635 Punica granatum HOM05D004231 ORTHO05D004814 9.9e-137 490.7 362 73.8
Lalb_Chr12g0208621 Lupinus albus HOM05D004231 ORTHO05D004814 2.9e-136 489.2 353 74.5
Lsat_1_v5_gn_4_71321 Lactuca sativa HOM05D004231 ORTHO05D004814 1.1e-135 487.3 380 68.7
PSO675G1855 Papaver somniferum HOM05D004231 ORTHO05D004814 1.1e-135 487.3 343 75.2
FAN27G2171 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.9e-135 486.5 376 71.5
PSO541G6356 Papaver somniferum HOM05D004231 ORTHO05D004814 2.4e-135 486.1 343 74.9
Nitab4.5_0000129g0030 Nicotiana tabacum HOM05D004231 ORTHO05D004814 3.2e-135 485.7 371 73.9
BcaB03g16474 Brassica carinata HOM05D004231 ORTHO05D004814 4.2e-135 485.3 357 75.9
Aqoxy1G01703 Aquilegia oxysepala HOM05D004231 ORTHO05D004814 5.4e-135 485.0 380 69.7
EL10Ac9g21537 Beta vulgaris HOM05D004231 ORTHO05D004814 5.4e-135 485.0 385 70.1
unitig_0.g2083 Utricularia gibba HOM05D004231 ORTHO05D004814 5.4e-135 485.0 379 71.5
Nitab4.5_0008730g0040 Nicotiana tabacum HOM05D004231 ORTHO05D004814 9.3e-135 484.2 374 72.7
AL3G50130 Arabidopsis lyrata HOM05D004231 ORTHO05D004814 2.1e-134 483.0 381 73.0
Sc08g0002160 Simmondsia chinensis HOM05D004231 ORTHO05D004814 2.7e-134 482.6 381 71.1
Thecc.02G146400 Theobroma cacao HOM05D004231 ORTHO05D004814 3.5e-134 482.3 380 70.3
Lalb_Chr07g0189301 Lupinus albus HOM05D004231 ORTHO05D004814 7.9e-134 481.1 356 72.8
C09p13290 Brassica napus HOM05D004231 ORTHO05D004814 1.0e-133 480.7 380 71.3
TPR.G18636 Trifolium pratense HOM05D004231 ORTHO05D004814 1.8e-133 479.9 361 72.3
BolC9t54222H Brassica oleracea HOM05D004231 ORTHO05D004814 2.3e-133 479.6 380 71.1
C07p06030 Brassica napus HOM05D004231 ORTHO05D004814 3.0e-133 479.2 381 72.4
AT2G17265 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 3.9e-133 478.8 381 72.2
BcaB07g31737 Brassica carinata HOM05D004231 ORTHO05D004814 5.1e-133 478.4 381 71.7
BraA09t36767Z Brassica rapa HOM05D004231 ORTHO05D004814 5.1e-133 478.4 381 71.1
Carub.0003s3121 Capsella rubella HOM05D004231 ORTHO05D004814 5.1e-133 478.4 381 72.4
BcaB03g16478 Brassica carinata HOM05D004231 ORTHO05D004814 6.7e-133 478.0 381 71.7
BcaC01g02941 Brassica carinata HOM05D004231 ORTHO05D004814 6.7e-133 478.0 372 72.3
BolC7t41016H Brassica oleracea HOM05D004231 ORTHO05D004814 6.7e-133 478.0 381 71.7
C03p58080 Brassica napus HOM05D004231 ORTHO05D004814 8.7e-133 477.6 372 72.3
BolC3t18081H Brassica oleracea HOM05D004231 ORTHO05D004814 8.7e-133 477.6 372 72.3
BcaC04g22982 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-132 477.2 380 71.1
A06p34120 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-132 477.2 378 71.2
A09p11260 Brassica napus HOM05D004231 ORTHO05D004814 1.1e-132 477.2 381 70.9
Sp3g30610 Schrenkiella parvula HOM05D004231 ORTHO05D004814 1.1e-132 477.2 381 72.2
CARHR293610 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.5e-132 476.9 381 70.6
A07p03760 Brassica napus HOM05D004231 ORTHO05D004814 2.5e-132 476.1 381 71.9
BraA07t28164Z Brassica rapa HOM05D004231 ORTHO05D004814 2.5e-132 476.1 381 71.9
AUR62013177 Chenopodium quinoa HOM05D004231 ORTHO05D004814 3.3e-132 475.7 384 69.3
Thhalv10022738m.g Eutrema salsugineum HOM05D004231 ORTHO05D004814 3.3e-132 475.7 380 71.8
Glyma.14G001000 Glycine max HOM05D004231 ORTHO05D004814 4.3e-132 475.3 321 79.1
Phvul.008G292300 Phaseolus vulgaris HOM05D004231 ORTHO05D004814 9.6e-132 474.2 339 77.0
BraA06t26345Z Brassica rapa HOM05D004231 ORTHO05D004814 1.3e-131 473.8 375 70.9
Ah.01g009950 Amaranthus hybridus HOM05D004231 ORTHO05D004814 1.6e-131 473.4 385 68.8
DCAR_006270 Daucus carota HOM05D004231 ORTHO05D004814 2.8e-131 472.6 358 71.8
TPR.G5084 Trifolium pratense HOM05D004231 ORTHO05D004814 6.2e-131 471.5 376 70.5
PSO782G1111 Papaver somniferum HOM05D004231 ORTHO05D004814 4.0e-130 468.8 365 71.0
PSO063G5124 Papaver somniferum HOM05D004231 ORTHO05D004814 6.9e-130 468.0 365 71.0
Aa31LG2G14870 Aethionema arabicum HOM05D004231 ORTHO05D004814 3.4e-129 465.7 377 68.4
CDE05G2018 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 7.6e-129 464.5 346 71.4
Medtr5g099180 Medicago truncatula HOM05D004231 ORTHO05D004814 9.9e-129 464.2 377 71.9
CDE05G1267 Ceratophyllum demersum HOM05D004231 ORTHO05D004814 1.3e-128 463.8 346 71.4
Carub.0007s0500 Capsella rubella HOM05D004231 ORTHO05D004814 5.5e-127 458.4 377 67.9
Psat2g000800 Pisum sativum HOM05D004231 ORTHO05D004814 5.5e-127 458.4 373 68.6
Peaxi162Scf00329g00312 Petunia axillaris HOM05D004231 ORTHO05D004814 2.7e-126 456.1 366 70.5
Psat2g000680 Pisum sativum HOM05D004231 ORTHO05D004814 1.1e-124 450.7 362 70.7
MBI18_g17319_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 1.1e-122 444.1 374 66.3
Gohir.A03G170800 Gossypium hirsutum HOM05D004231 ORTHO05D004814 3.4e-121 439.1 305 76.1
SHI25239 Sapria himalayana HOM05D004231 ORTHO05D004814 1.0e-120 437.6 375 68.5
Gorai.005G216700 Gossypium raimondii HOM05D004231 ORTHO05D004814 3.8e-120 435.6 305 75.1
Gohir.D02G193900 Gossypium hirsutum HOM05D004231 ORTHO05D004814 6.5e-120 434.9 305 75.1
ATR0177G062 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.4e-119 433.7 387 62.8
HPP92_007738 Vanilla planifolia HOM05D004231 ORTHO05D004814 6.0e-118 428.3 358 67.0
AUR62010176 Chenopodium quinoa HOM05D004231 ORTHO05D004814 6.7e-117 424.9 384 60.7
GSVIVG01023624001 Vitis vinifera HOM05D004231 ORTHO05D004814 6.5e-112 408.3 376 64.4
BcaC06g36249 Brassica carinata HOM05D004231 ORTHO05D004814 2.2e-107 393.3 318 70.8
Pp3c5_14900 Physcomitrium patens HOM05D004231 ORTHO05D004814 8.2e-107 391.3 375 61.1
Mapoly0173s0009 Marchantia polymorpha HOM05D004231 ORTHO05D004814 5.5e-103 378.6 323 63.8
Lj9P408T30 Lonicera japonica HOM05D004231 ORTHO05D004814 9.4e-103 377.9 247 83.4
Os02g0831800 Oryza sativa ssp. japonica HOM05D004231 ORTHO05D004814 4.7e-102 375.6 359 59.3
Cpa.g.sc60.14 Carica papaya HOM05D004231 ORTHO05D004814 6.7e-101 371.7 366 62.8
BcaB03g16477 Brassica carinata HOM05D004231 ORTHO05D004814 1.1e-100 370.9 306 70.9
THA.LOC104807405 Tarenaya hassleriana HOM05D004231 ORTHO05D004814 5.5e-95 352.1 243 80.2
CARHR243620 Cardamine hirsuta HOM05D004231 ORTHO05D004814 1.4e-93 347.4 296 66.6
SMO351G0181 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 8.8e-93 344.7 336 58.9
Atru.chr5.3561 Acer truncatum HOM05D004231 ORTHO05D004814 2.0e-92 343.6 206 82.5
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 1.7e-91 340.5 374 54.0
MBI10_g41732_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 7.7e-89 331.6 297 58.9
MBI15_g18193_MAGBIO Magnolia biondii HOM05D004231 ORTHO05D004814 6.5e-88 328.6 340 56.5
COL.COLO4_34312 Corchorus olitorius HOM05D000109 ORTHO05D000520 1.1e-87 327.8 322 56.5
ATR0810G109 Amborella trichopoda HOM05D004231 ORTHO05D004814 1.4e-82 310.8 333 56.8
Cre02.g082250 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 7.7e-81 305.1 339 53.1
SEGI_38009 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-69 266.9 232 60.8
TAR625G1260 Trochodendron aralioides HOM05D004231 ORTHO05D004814 5.4e-66 255.8 208 66.8
Cre02.g082200 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 5.0e-56 222.6 229 53.7
Dinv20762 Davidia involucrata HOM05D004231 ORTHO05D004814 9.5e-55 218.4 130 85.4
SMO231G0001 Selaginella moellendorffii HOM05D004231 ORTHO05D004814 4.0e-45 186.4 165 58.8
Atru.chr5.3560 Acer truncatum HOM05D004231 ORTHO05D004814 5.4e-42 176.0 138 69.6
Sabra09G0130700 Salix brachista HOM05D004231 ORTHO05D004814 8.1e-38 162.2 164 57.9
VMungo0331G0717 Vigna mungo HOM05D004231 ORTHO05D004814 4.0e-37 159.8 102 74.5
TAR625G0010 Trochodendron aralioides HOM05D004231 ORTHO05D004814 4.9e-35 152.9 90 81.1
VMungo0647G1050 Vigna mungo HOM05D004231 ORTHO05D004814 2.7e-33 147.1 95 74.7
Actinidia26328 Actinidia chinensis HOM05D004231 ORTHO05D004814 1.6e-30 137.9 128 60.9
arahy.Tifrunner.gnm1.ann1.H05BEB Arachis hypogaea HOM05D004231 ORTHO05D004814 3.8e-27 126.7 91 67.0
BcaB08g34718 Brassica carinata HOM05D004231 ORTHO05D004814 2.7e-25 120.6 78 76.9
unitig_747.g21541 Utricularia gibba HOM05D006537 ORTHO05D008186 1.5e-23 114.8 283 32.2
QL06p003747 Quercus lobata HOM05D003236 ORTHO05D003620 4.3e-23 113.2 115 50.4
QL03p013131 Quercus lobata HOM05D004231 ORTHO05D004814 1.1e-21 108.6 97 54.6
QL08p042586 Quercus lobata HOM05D004231 ORTHO05D004814 4.0e-21 106.7 116 50.9
BcaC06g34170 Brassica carinata HOM05D004231 ORTHO05D004814 9.9e-20 102.1 66 75.8
BcaB08g34717 Brassica carinata HOM05D004231 ORTHO05D004814 3.2e-18 97.1 83 61.4
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 3.2e-18 97.1 103 50.5
MCO14G367 Micromonas commoda HOM05D004231 ORTHO05D004814 9.3e-18 95.5 324 31.5
PRCOL_00006973 Prasinoderma coloniale HOM05D004231 ORTHO05D004814 3.7e-14 83.6 270 30.7
TAR625G0853 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.8e-13 81.3 178 37.6
Lsat_1_v5_gn_2_1161 Lactuca sativa HOM05D004231 ORTHO05D004814 5.3e-13 79.7 57 66.7
AT4G35295 Arabidopsis thaliana HOM05D004231 ORTHO05D004814 1.9e-10 71.2 63 58.7
SEGI_37911 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 1.9e-10 71.2 50 66.0
FAN07G1153 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.5e-10 69.7 46 71.7
FAN15G0284 Fragaria x ananassa HOM05D004231 ORTHO05D004814 5.5e-10 69.7 46 71.7
FAN05G5401 Fragaria x ananassa HOM05D004231 ORTHO05D004814 1.6e-09 68.2 43 69.8
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 1.0e-08 65.5 43 69.8
Cre02.g082150 Chlamydomonas reinhardtii HOM05D004231 ORTHO05D004814 1.8e-08 64.7 67 52.2
FAN05G3570 Fragaria x ananassa HOM05D004231 ORTHO05D004814 2.3e-08 64.3 46 67.4
BolC7t43738H Brassica oleracea HOM05D004231 ORTHO05D004814 3.9e-08 63.5 69 52.2
FAN23G0549 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.7e-08 62.8 76 44.7
FAN23G1162 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.7e-08 62.8 76 44.7
FAN25G3338 Fragaria x ananassa HOM05D004231 ORTHO05D004814 6.7e-08 62.8 46 63.0
Ah.03g140200 Amaranthus hybridus HOM05D004231 ORTHO05D004814 8.7e-08 62.4 67 73.1
C07p31950 Brassica napus HOM05D004231 ORTHO05D004814 8.7e-08 62.4 73 49.3
FAN04G2646 Fragaria x ananassa HOM05D004231 ORTHO05D004814 9.6e-07 58.9 41 65.9
BcaB08g35109 Brassica carinata HOM05D004231 ORTHO05D004814 1.3e-06 58.5 43 65.1
TAR625G0182 Trochodendron aralioides HOM05D000369 ORTHO05D000253 1.3e-06 58.5 73 50.7


User provided reference genes

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