Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007199 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 2.2e-179 632.1 308 100.0
CSS0016231 Camellia sinensis var. sinensis HOM05D005736 ORTHO05D007215 8.5e-179 630.2 308 99.7
Hma1.2p1_1292F.1_g273760 Hydrangea macrophylla HOM05D005736 ORTHO05D007215 4.7e-153 544.7 308 82.8
DCAR_003356 Daucus carota HOM05D005736 ORTHO05D007215 1.1e-149 533.5 308 82.1
TAR633G1366 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.6e-148 529.6 309 81.2
PGR031G0613 Punica granatum HOM05D005736 ORTHO05D007215 2.3e-147 525.8 309 79.0
Thecc.05G313100 Theobroma cacao HOM05D005736 ORTHO05D007215 1.9e-146 522.7 308 79.2
GSVIVG01031141001 Vitis vinifera HOM05D005736 ORTHO05D007215 1.9e-146 522.7 297 80.5
Atru.chr2.31 Acer truncatum HOM05D005736 ORTHO05D007215 4.3e-146 521.5 308 80.8
Peaxi162Scf00037g01216 Petunia axillaris HOM05D005736 ORTHO05D007215 4.3e-146 521.5 308 79.9
Rhsim07G0188500 Rhododendron simsii HOM05D002832 ORTHO05D008667 9.5e-146 520.4 383 69.2
Lsat_1_v5_gn_7_69261 Lactuca sativa HOM05D005736 ORTHO05D007215 2.1e-145 519.2 308 77.9
Duzib106G0969 Durio zibethinus HOM05D005736 ORTHO05D007215 4.7e-145 518.1 308 78.2
Potri.013G017000 Populus trichocarpa HOM05D005736 ORTHO05D007215 4.7e-145 518.1 308 78.2
Aqoxy5G00736 Aquilegia oxysepala HOM05D005736 ORTHO05D007215 8.0e-145 517.3 313 78.0
COL.COLO4_10521 Corchorus olitorius HOM05D005736 ORTHO05D007215 1.5e-143 513.1 308 77.9
Haze_04138 Corylus avellana HOM05D005736 ORTHO05D007215 1.5e-143 513.1 303 77.6
vmacro04813 Vaccinium macrocarpon HOM05D005736 ORTHO05D007215 1.5e-143 513.1 381 68.8
Cc02_g34150 Coffea canephora HOM05D005736 ORTHO05D007215 2.0e-143 512.7 306 79.4
CANSAT54G0716 Cannabis sativa HOM05D005736 ORTHO05D007215 2.6e-143 512.3 303 77.2
Potri.005G025300 Populus trichocarpa HOM05D005736 ORTHO05D007215 2.6e-143 512.3 308 76.9
PGSC0003DMG400024712 Solanum tuberosum HOM05D005736 ORTHO05D007215 5.8e-143 511.1 311 77.5
SGA_v2.0_scaffold196G40952 Striga asiatica HOM05D005736 ORTHO05D007215 7.5e-143 510.8 305 78.7
Nitab4.5_0003844g0030 Nicotiana tabacum HOM05D005736 ORTHO05D007215 9.8e-143 510.4 307 77.9
Sc09g0002940 Simmondsia chinensis HOM05D005736 ORTHO05D007215 9.8e-143 510.4 305 77.4
Sopen01g043240 Solanum pennellii HOM05D005736 ORTHO05D007215 9.8e-143 510.4 311 77.2
Sabra13G0020000 Salix brachista HOM05D005736 ORTHO05D007215 1.3e-142 510.0 308 77.3
CiPaw.07G021500 Carya illinoinensis HOM05D005736 ORTHO05D007215 1.7e-142 509.6 303 76.9
Sabra13G0015800 Salix brachista HOM05D005736 ORTHO05D007215 1.7e-142 509.6 308 77.3
TAR362G0909 Trochodendron aralioides HOM05D005736 ORTHO05D007215 2.2e-142 509.2 298 79.5
HanXRQChr16g0513361 Helianthus annuus HOM05D005736 ORTHO05D007215 2.9e-142 508.8 308 76.9
Manes.09G170200 Manihot esculenta HOM05D005736 ORTHO05D007215 4.9e-142 508.1 305 78.0
Solyc09g065950.3 Solanum lycopersicum HOM05D005736 ORTHO05D007215 4.9e-142 508.1 311 77.2
Glyma.19G233300 Glycine max HOM05D005736 ORTHO05D007215 6.4e-142 507.7 308 77.6
Medtr7g112700 Medicago truncatula HOM05D005736 ORTHO05D007215 1.4e-141 506.5 308 78.2
QL03p020205 Quercus lobata HOM05D005736 ORTHO05D007215 1.8e-141 506.1 307 75.9
Hund07098 Selenicereus undatus HOM05D005736 ORTHO05D007215 1.8e-141 506.1 308 75.0
ECA234G1428 Erigeron canadensis HOM05D005736 ORTHO05D007215 3.2e-141 505.4 298 77.5
MD12G1212900 Malus domestica HOM05D005736 ORTHO05D007215 4.1e-141 505.0 308 75.6
arahy.Tifrunner.gnm1.ann1.7HV2PX Arachis hypogaea HOM05D005736 ORTHO05D007215 7.0e-141 504.2 301 77.1
Lalb_Chr15g0077351 Lupinus albus HOM05D005736 ORTHO05D007215 7.0e-141 504.2 309 77.3
Gorai.007G300100 Gossypium raimondii HOM05D005736 ORTHO05D007215 9.2e-141 503.8 308 75.3
MSTRG.20415 Avicennia marina HOM05D005736 ORTHO05D007215 1.2e-140 503.4 305 77.0
Gohir.D11G277900 Gossypium hirsutum HOM05D005736 ORTHO05D007215 2.0e-140 502.7 308 75.3
CAN.G1459.12 Capsicum annuum HOM05D005736 ORTHO05D007215 3.5e-140 501.9 308 76.9
Glyma.03G235500 Glycine max HOM05D005736 ORTHO05D007215 4.6e-140 501.5 308 77.3
AUR62005207 Chenopodium quinoa HOM05D005736 ORTHO05D007215 7.8e-140 500.7 304 77.0
arahy.Tifrunner.gnm1.ann1.B5Q7D5 Arachis hypogaea HOM05D005736 ORTHO05D007215 1.7e-139 499.6 302 76.8
Gohir.A11G268000 Gossypium hirsutum HOM05D005736 ORTHO05D007215 1.7e-139 499.6 308 75.3
Prupe.6G320500 Prunus persica HOM05D005736 ORTHO05D007215 1.7e-139 499.6 308 76.0
TWI36G0679 Tripterygium wilfordii HOM05D005736 ORTHO05D007215 1.7e-139 499.6 308 76.0
ClCG02G015270 Citrullus lanatus HOM05D005736 ORTHO05D007215 2.3e-139 499.2 308 74.4
Migut.O00559 Erythranthe guttata HOM05D005736 ORTHO05D007215 3.0e-139 498.8 305 76.1
Phvul.006G089500 Phaseolus vulgaris HOM05D005736 ORTHO05D007215 3.9e-139 498.4 308 76.0
Migut.N02084 Erythranthe guttata HOM05D005736 ORTHO05D007215 5.0e-139 498.0 305 76.4
HanXRQChr10g0296691 Helianthus annuus HOM05D005736 ORTHO05D007215 8.6e-139 497.3 305 76.4
Ciclev10001982m.g Citrus clementina HOM05D005736 ORTHO05D007215 1.1e-138 496.9 308 75.6
Lj1g0012360 Lotus japonicus HOM05D005736 ORTHO05D007215 1.9e-138 496.1 308 75.3
PSO210G0197 Papaver somniferum HOM05D005736 ORTHO05D007215 3.3e-138 495.4 301 75.4
RcHm_v2.0_Chr3g0455751 Rosa chinensis HOM05D005736 ORTHO05D007215 3.3e-138 495.4 308 75.3
EL10Ac4g09914 Beta vulgaris HOM05D005736 ORTHO05D007215 4.3e-138 495.0 306 75.5
Ah.06g189800 Amaranthus hybridus HOM05D005736 ORTHO05D007215 5.6e-138 494.6 305 75.1
MD04G1200300 Malus domestica HOM05D005736 ORTHO05D007215 5.6e-138 494.6 310 74.5
PSO832G2303 Papaver somniferum HOM05D005736 ORTHO05D007215 1.2e-137 493.4 301 75.1
Nn3g21454 Nelumbo nucifera HOM05D005736 ORTHO05D007215 3.6e-137 491.9 309 73.8
Oeu043344.1 Olea europaea HOM05D005736 ORTHO05D007215 8.0e-137 490.7 305 74.8
Dinv30811 Davidia involucrata HOM05D005736 ORTHO05D007215 1.8e-136 489.6 308 76.3
TPR.G33191 Trifolium pratense HOM05D005736 ORTHO05D007215 2.3e-136 489.2 307 75.6
Cfa006630 Carpinus fangiana HOM05D005736 ORTHO05D007215 4.0e-136 488.4 303 74.9
FvH4_6g06571 Fragaria vesca HOM05D005736 ORTHO05D007215 6.8e-136 487.6 308 74.0
ATR0796G081 Amborella trichopoda HOM05D005736 ORTHO05D007215 1.2e-135 486.9 308 72.1
THA.LOC104818718 Tarenaya hassleriana HOM05D005736 ORTHO05D007215 7.5e-135 484.2 305 72.8
CsaV3_2G006740 Cucumis sativus L. HOM05D005736 ORTHO05D007215 1.3e-134 483.4 308 72.4
VMungo0540G0827 Vigna mungo HOM05D005736 ORTHO05D007215 1.3e-134 483.4 308 73.7
Sed0015517 Sechium edule HOM05D005736 ORTHO05D007215 1.7e-134 483.0 307 72.3
Aa31LG5G15870 Aethionema arabicum HOM05D005736 ORTHO05D007215 2.2e-134 482.6 306 71.6
Sp3g04350 Schrenkiella parvula HOM05D005736 ORTHO05D007215 2.4e-133 479.2 306 71.2
AL3G16120 Arabidopsis lyrata HOM05D005736 ORTHO05D007215 4.1e-133 478.4 306 70.9
Gohir.A11G294600 Gossypium hirsutum HOM05D005736 ORTHO05D007215 4.1e-133 478.4 308 72.4
BNapus_Darmor_BZH_scaffold_114p00020 Brassica napus HOM05D005736 ORTHO05D007215 5.4e-133 478.0 304 70.7
CDE02G3291 Ceratophyllum demersum HOM05D005736 ORTHO05D007215 1.2e-132 476.9 305 74.1
AT3G05520 Arabidopsis thaliana HOM05D005736 ORTHO05D007215 1.6e-132 476.5 305 70.8
BcaB04g19260 Brassica carinata HOM05D005736 ORTHO05D007215 1.6e-132 476.5 306 70.9
BraSC132t45500Z Brassica rapa HOM05D005736 ORTHO05D007215 1.6e-132 476.5 304 70.7
BraA03t12591Z Brassica rapa HOM05D005736 ORTHO05D007215 2.7e-132 475.7 305 70.8
Thhalv10021069m.g Eutrema salsugineum HOM05D005736 ORTHO05D007215 3.5e-132 475.3 311 71.1
BcaB04g19261 Brassica carinata HOM05D005736 ORTHO05D007215 1.0e-131 473.8 306 69.9
CARHR079910 Cardamine hirsuta HOM05D005736 ORTHO05D007215 1.0e-131 473.8 305 70.5
BolC3t16437H Brassica oleracea HOM05D005736 ORTHO05D007215 1.7e-131 473.0 305 69.8
Carub.0003s0481 Capsella rubella HOM05D005736 ORTHO05D007215 1.7e-131 473.0 307 71.0
FAN09G2204 Fragaria x ananassa HOM05D001134 ORTHO05D007215 6.6e-131 471.1 307 72.6
A03p34170 Brassica napus HOM05D005736 ORTHO05D007215 3.3e-130 468.8 304 69.7
FAN05G2751 Fragaria x ananassa HOM05D001134 ORTHO05D007215 5.6e-130 468.0 307 72.0
C03p41560 Brassica napus HOM05D005736 ORTHO05D007215 1.2e-129 466.8 304 69.7
Gorai.007G341300 Gossypium raimondii HOM05D005736 ORTHO05D007215 1.1e-128 463.8 332 66.9
FAN02G0934 Fragaria x ananassa HOM05D005736 ORTHO05D007215 3.1e-128 462.2 344 65.7
FAN14G1274 Fragaria x ananassa HOM05D001134 ORTHO05D001035 2.2e-126 456.1 317 69.7
BolC1t05691H Brassica oleracea HOM05D005736 ORTHO05D007215 1.1e-125 453.8 311 67.2
HPP92_002147 Vanilla planifolia HOM05D005736 ORTHO05D007215 9.2e-125 450.7 306 66.3
Zm00001eb330450 Zea mays HOM05D005736 ORTHO05D007215 5.2e-120 434.9 300 65.3
MELO3C004216.2 Cucumis melo HOM05D005736 ORTHO05D007215 1.2e-119 433.7 308 66.9
Zm00001eb111300 Zea mays HOM05D005736 ORTHO05D007215 6.4e-118 427.9 308 65.6
Eucgr.H04534 Eucalyptus grandis HOM05D005736 ORTHO05D007215 1.1e-117 427.2 272 73.9
Cpa.g.sc48.100 Carica papaya HOM05D005736 ORTHO05D007215 1.4e-117 426.8 308 68.2
AUR62000762 Chenopodium quinoa HOM05D005736 ORTHO05D007215 1.1e-114 417.2 256 75.8
unitig_46.g18374 Utricularia gibba HOM05D005736 ORTHO05D007215 9.9e-111 404.1 265 70.6
Psat3g011440 Pisum sativum HOM05D005736 ORTHO05D007215 3.2e-109 399.1 260 71.5
Actinidia35560 Actinidia chinensis HOM05D002832 ORTHO05D008667 3.9e-107 392.1 265 75.1
Gohir.D11G309300 Gossypium hirsutum HOM05D005736 ORTHO05D007215 8.4e-102 374.4 238 71.4
unitig_46.g18363 Utricularia gibba HOM05D005736 ORTHO05D007215 4.8e-97 358.6 301 57.5
Mapoly0002s0253 Marchantia polymorpha HOM05D005736 ORTHO05D007215 5.3e-96 355.1 302 54.3
RcHm_v2.0_Chr1g0327431 Rosa chinensis HOM05D005736 ORTHO05D007215 9.9e-95 350.9 201 79.1
Os07g0414800 Oryza sativa ssp. japonica HOM05D005736 ORTHO05D007215 2.1e-92 343.2 216 72.2
unitig_48.g30289 Utricularia gibba HOM05D005736 ORTHO05D007215 2.5e-90 336.3 301 56.5
SMO196G0013 Selaginella moellendorffii HOM05D005736 ORTHO05D007215 2.8e-89 332.8 291 53.6
AagrBONN_evm.TU.Sc2ySwM_344.5036 Anthoceros agrestis HOM05D005736 ORTHO05D007215 9.0e-88 327.8 301 51.2
Nitab4.5_0018629g0010 Nicotiana tabacum HOM05D005736 ORTHO05D007215 2.0e-87 326.6 177 84.7
Sopen09g027740 Solanum pennellii HOM05D005736 ORTHO05D007215 2.9e-86 322.8 177 84.2
BcaC09g47830 Brassica carinata HOM05D005736 ORTHO05D007215 8.7e-83 311.2 207 65.7
Lj5A420T26 Lonicera japonica HOM05D005736 ORTHO05D007215 3.6e-76 289.3 179 78.2
RcHm_v2.0_Chr1g0322221 Rosa chinensis HOM05D005736 ORTHO05D007215 9.4e-69 264.6 181 70.2
Pp3c10_25170 Physcomitrium patens HOM05D005736 ORTHO05D007215 2.7e-68 263.1 237 51.5
RcHm_v2.0_Chr3g0465741 Rosa chinensis HOM05D005736 ORTHO05D007215 2.6e-63 246.5 143 76.2
Actinidia16813 Actinidia chinensis HOM05D005736 ORTHO05D007215 7.4e-58 228.4 129 84.5
Pp3c20_23130 Physcomitrium patens HOM05D005736 ORTHO05D007215 5.0e-54 215.7 187 56.7
BcaB05g23235 Brassica carinata HOM05D005736 ORTHO05D007215 1.1e-53 214.5 170 57.1
Actinidia16814 Actinidia chinensis HOM05D005736 ORTHO05D007215 1.5e-50 204.1 107 91.6
MBI18_g08112_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 4.4e-50 202.6 130 72.3
BcaB04g21446 Brassica carinata HOM05D005736 ORTHO05D007215 2.9e-46 189.9 127 70.1
RcHm_v2.0_Chr1g0322051 Rosa chinensis HOM05D005736 ORTHO05D007215 4.4e-42 176.0 129 66.7
MBI18_g44147_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 9.1e-40 168.3 105 75.2
Nitab4.5_0003658g0100 Nicotiana tabacum HOM05D001134 ORTHO05D001035 2.8e-36 156.8 106 70.8
TAR636G3309 Trochodendron aralioides HOM05D005736 ORTHO05D007215 1.2e-34 151.4 109 67.9
TAR629G2822 Trochodendron aralioides HOM05D005736 ORTHO05D007215 3.4e-34 149.8 107 71.0
RcHm_v2.0_Chr1g0322151 Rosa chinensis HOM05D005736 ORTHO05D007215 2.7e-31 140.2 108 64.8
unitig_48.g30291 Utricularia gibba HOM05D003281 ORTHO05D004128 3.6e-20 103.2 85 52.9
MBI18_g08111_MAGBIO Magnolia biondii HOM05D005736 ORTHO05D007215 6.8e-19 99.0 52 78.8


User provided reference genes

Program Settings