Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.9e-168 594.7 306 100.0
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.1e-165 585.1 310 98.1
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 9.7e-151 537.0 306 88.2
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 5.0e-147 524.6 303 85.8
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 5.0e-147 524.6 307 88.9
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 1.0e-144 516.9 303 86.8
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 1.8e-144 516.2 306 85.3
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.5e-143 513.1 309 85.8
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 1.5e-143 513.1 306 82.7
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.4e-143 511.5 303 85.8
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 9.7e-143 510.4 284 88.7
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 1.7e-142 509.6 307 84.4
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 3.7e-142 508.4 306 85.0
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 4.8e-142 508.1 301 85.4
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 6.3e-142 507.7 301 85.0
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 1.1e-141 506.9 303 83.8
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.4e-141 506.5 307 82.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.8e-141 506.1 303 83.8
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 1.8e-141 506.1 301 86.4
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.1e-141 505.4 304 85.5
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 5.3e-141 504.6 301 86.4
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 7.0e-141 504.2 299 84.6
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 9.1e-141 503.8 283 88.7
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 9.1e-141 503.8 306 84.0
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.2e-140 503.4 303 83.2
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.0e-140 502.7 306 81.4
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 2.0e-140 502.7 299 86.0
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 5.9e-140 501.1 303 84.2
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 5.9e-140 501.1 306 83.3
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.3e-139 500.0 306 81.7
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 1.7e-139 499.6 303 84.8
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 2.2e-139 499.2 303 82.2
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 3.8e-139 498.4 306 82.0
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 3.8e-139 498.4 305 83.6
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 8.5e-139 497.3 306 83.3
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-138 496.9 296 85.5
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 1.9e-138 496.1 303 82.8
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.5e-138 494.6 303 84.8
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 9.4e-138 493.8 303 81.8
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 9.4e-138 493.8 283 84.8
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 9.4e-138 493.8 306 80.1
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.2e-137 493.4 303 80.9
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 1.6e-137 493.0 303 81.5
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 1.6e-137 493.0 303 81.8
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 2.1e-137 492.7 303 80.9
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 2.7e-137 492.3 303 81.5
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.7e-137 492.3 283 85.5
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 4.7e-137 491.5 286 85.0
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 4.7e-137 491.5 283 85.2
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 6.1e-137 491.1 306 80.7
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 8.0e-137 490.7 303 80.5
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 8.0e-137 490.7 303 82.5
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 1.0e-136 490.3 303 80.2
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 1.0e-136 490.3 303 83.2
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 1.0e-136 490.3 304 80.6
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 1.4e-136 490.0 303 82.5
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 1.8e-136 489.6 286 83.9
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 3.0e-136 488.8 303 81.2
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.0e-136 488.8 313 79.6
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 3.0e-136 488.8 285 85.6
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 4.0e-136 488.4 286 83.6
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 4.0e-136 488.4 286 83.6
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 4.0e-136 488.4 286 83.6
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 4.0e-136 488.4 288 84.0
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 5.2e-136 488.0 285 84.6
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 6.8e-136 487.6 286 83.6
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 8.8e-136 487.3 303 81.8
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 1.2e-135 486.9 309 81.2
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 1.5e-135 486.5 303 80.2
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 2.6e-135 485.7 286 82.9
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 2.6e-135 485.7 306 80.4
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 2.6e-135 485.7 309 80.9
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 3.4e-135 485.3 307 81.8
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 3.4e-135 485.3 299 81.9
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 5.7e-135 484.6 303 80.9
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 7.5e-135 484.2 288 82.6
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 7.5e-135 484.2 303 80.9
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 1.7e-134 483.0 303 79.2
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 1.7e-134 483.0 305 81.0
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 3.7e-134 481.9 285 83.2
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 3.7e-134 481.9 284 83.5
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 6.3e-134 481.1 299 80.6
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 1.1e-133 480.3 303 80.9
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 1.4e-133 479.9 285 83.5
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 1.8e-133 479.6 305 80.0
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 2.4e-133 479.2 304 81.9
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.0e-133 477.6 301 82.4
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 1.2e-132 476.9 283 82.3
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.6e-132 476.5 277 87.7
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 1.6e-132 476.5 297 80.1
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.7e-132 475.7 306 80.7
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 2.7e-132 475.7 286 81.8
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 5.9e-132 474.6 303 79.2
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 1.0e-131 473.8 286 81.5
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 1.7e-131 473.0 279 82.4
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.7e-131 473.0 302 78.1
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 2.3e-131 472.6 267 86.9
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.0e-131 471.5 285 81.8
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 8.6e-131 470.7 306 77.5
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.5e-130 469.2 285 81.8
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 3.3e-130 468.8 285 83.2
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.6e-129 465.3 307 76.5
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 4.7e-129 464.9 285 81.8
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 4.7e-129 464.9 330 75.2
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 1.4e-128 463.4 287 79.4
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.4e-128 463.4 305 77.7
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 2.3e-128 462.6 302 78.5
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 4.0e-128 461.8 282 79.8
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 4.0e-128 461.8 316 76.3
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 4.0e-128 461.8 281 83.3
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 2.6e-127 459.1 283 80.6
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 9.8e-127 457.2 302 77.5
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 2.2e-126 456.1 299 75.6
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 6.3e-126 454.5 303 75.9
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 8.3e-126 454.1 272 83.5
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 5.4e-125 451.4 303 73.3
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 1.6e-124 449.9 306 77.5
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 1.0e-123 447.2 303 74.9
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 2.3e-123 446.0 288 78.5
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-122 443.7 390 64.6
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 5.8e-119 431.4 267 82.8
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 7.0e-117 424.5 278 80.2
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 4.6e-116 421.8 221 93.7
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 1.7e-115 419.9 280 75.7
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.1e-114 417.2 221 91.0
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 4.7e-113 411.8 267 77.5
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 6.2e-113 411.4 281 74.7
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.7e-110 402.1 312 71.2
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 1.9e-109 399.8 288 67.0
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 9.2e-109 397.5 218 87.6
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 9.2e-109 397.5 218 87.6
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 5.1e-107 391.7 250 74.4
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 3.3e-106 389.0 273 68.9
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.1e-104 384.0 251 73.3
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 3.2e-101 372.5 200 89.0
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 4.3e-98 362.1 238 79.4
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 1.1e-96 357.5 289 61.6
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 6.8e-96 354.8 215 83.3
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 2.5e-90 336.3 208 81.7
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 9.6e-90 334.3 182 89.6
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 3.6e-89 332.4 182 87.4
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 8.1e-81 304.7 174 85.1
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 1.2e-79 300.8 221 73.3
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 3.2e-77 292.7 188 76.1
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 6.9e-72 275.0 152 87.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 2.5e-66 256.5 194 66.0
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.7e-62 243.8 146 81.5
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-59 233.8 209 62.2
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 6.9e-48 195.3 258 45.7
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 2.6e-47 193.4 119 75.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 8.5e-46 188.3 158 63.9
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.2e-44 184.5 136 71.3
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 7.4e-42 175.3 177 55.9
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 5.3e-40 169.1 105 76.2
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 1.1e-37 161.4 86 86.0
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 2.6e-34 150.2 96 74.0
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 8.5e-30 135.2 301 32.9
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.5e-29 134.4 80 81.2
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 3.0e-27 126.7 196 42.9
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.2e-26 124.8 87 73.6
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 5.7e-26 122.5 170 42.4
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 5.4e-24 115.9 66 83.3
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 5.4e-24 115.9 66 83.3
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 3.7e-17 93.2 53 81.1
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 8.3e-17 92.0 158 39.9
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 2.4e-16 90.5 83 69.9
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 5.4e-16 89.4 85 56.5
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 3.5e-15 86.7 79 57.0
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.7e-15 85.5 65 70.8
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 7.7e-15 85.5 65 70.8
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 1.0e-11 75.1 92 45.7
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 1.8e-11 74.3 65 61.5
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 1.5e-10 71.2 110 40.9
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 5.7e-10 69.3 103 39.8
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 3.7e-09 66.6 57 54.4
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 1.4e-08 64.7 43 76.7
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 5.4e-08 62.8 53 64.2
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 4.6e-07 59.7 53 60.4
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 4.6e-07 59.7 34 79.4
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 6.6e-06 55.8 38 71.1
Solyc04g079010.1 Solanum lycopersicum HOM05D003815 ORTHO05D004580 6.6e-06 55.8 31 74.2


User provided reference genes

Program Settings