Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007137 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D022137 1.9e-47 192.2 100 100.0
CSS0025898 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 5.6e-47 190.7 100 99.0
CSS0030196 Camellia sinensis var. sinensis HOM05D003293 ORTHO05D005060 5.6e-47 190.7 100 99.0
MD10G1213800 Malus domestica HOM05D003293 ORTHO05D005060 1.5e-44 182.6 100 94.0
Lsat_1_v5_gn_3_115940 Lactuca sativa HOM05D003293 ORTHO05D005060 2.6e-44 181.8 100 93.0
Actinidia26213 Actinidia chinensis HOM05D003293 ORTHO05D005060 3.4e-44 181.4 100 94.0
MD05G1237000 Malus domestica HOM05D003293 ORTHO05D005060 5.8e-44 180.6 100 92.0
ECA240G2653 Erigeron canadensis HOM05D003293 ORTHO05D005060 7.5e-44 180.3 100 92.0
FAN21G2700 Fragaria x ananassa HOM05D003293 ORTHO05D005060 7.5e-44 180.3 100 93.0
Rhsim03G0000200 Rhododendron simsii HOM05D003293 ORTHO05D005060 7.5e-44 180.3 100 94.0
THA.LOC104812383 Tarenaya hassleriana HOM05D003293 ORTHO05D005060 7.5e-44 180.3 100 92.0
Oeu033076.1 Olea europaea HOM05D003293 ORTHO05D005060 9.9e-44 179.9 100 91.0
HanXRQChr13g0420911 Helianthus annuus HOM05D003293 ORTHO05D005060 1.3e-43 179.5 100 91.0
SalBow8G3872 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.3e-43 179.5 100 92.0
SalBow8G4723 Salvia bowleyana HOM05D003293 ORTHO05D005060 1.3e-43 179.5 100 92.0
FAN25G2457 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.7e-43 179.1 100 91.0
FvH4_3g14430 Fragaria vesca HOM05D003293 ORTHO05D005060 2.2e-43 178.7 100 92.0
FAN16G3527 Fragaria x ananassa HOM05D003293 ORTHO05D005060 2.2e-43 178.7 100 92.0
Hma1.2p1_0210F.1_g089470 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.2e-43 178.7 100 92.0
Hma1.2p1_2875F.1_g329750 Hydrangea macrophylla HOM05D003293 ORTHO05D005060 2.2e-43 178.7 100 92.0
vmacro05416 Vaccinium macrocarpon HOM05D003293 ORTHO05D005060 2.2e-43 178.7 100 93.0
MD05G1237500 Malus domestica HOM05D003293 ORTHO05D005060 3.7e-43 177.9 100 91.0
Prupe.4G129200 Prunus persica HOM05D003293 ORTHO05D005060 3.7e-43 177.9 100 91.0
RcHm_v2.0_Chr5g0023561 Rosa chinensis HOM05D003293 ORTHO05D005060 3.7e-43 177.9 100 92.0
Atru.chr1.64 Acer truncatum HOM05D003293 ORTHO05D005060 4.9e-43 177.6 100 91.0
Dinv42465 Davidia involucrata HOM05D003293 ORTHO05D005060 4.9e-43 177.6 100 90.0
HanXRQChr14g0433351 Helianthus annuus HOM05D003293 ORTHO05D005060 6.4e-43 177.2 100 89.0
SGA_v2.0_scaffold239G44013 Striga asiatica HOM05D003293 ORTHO05D005060 6.4e-43 177.2 100 91.0
arahy.Tifrunner.gnm1.ann1.12ZBK0 Arachis hypogaea HOM05D003293 ORTHO05D005060 8.3e-43 176.8 100 91.0
arahy.Tifrunner.gnm1.ann1.GYGU5R Arachis hypogaea HOM05D003293 ORTHO05D005060 8.3e-43 176.8 100 91.0
arahy.Tifrunner.gnm1.ann1.WB9EUJ Arachis hypogaea HOM05D003293 ORTHO05D005060 8.3e-43 176.8 100 91.0
C05p14510 Brassica napus HOM05D003293 ORTHO05D005060 8.3e-43 176.8 100 90.0
BolC5t30176H Brassica oleracea HOM05D003293 ORTHO05D005060 8.3e-43 176.8 100 90.0
CiPaw.11G057700 Carya illinoinensis HOM05D003293 ORTHO05D005060 8.3e-43 176.8 100 90.0
RcHm_v2.0_Chr5g0023741 Rosa chinensis HOM05D003293 ORTHO05D005060 8.3e-43 176.8 100 91.0
arahy.Tifrunner.gnm1.ann1.Z9YTJW Arachis hypogaea HOM05D003293 ORTHO05D005060 1.1e-42 176.4 100 90.0
BcaB02g06613 Brassica carinata HOM05D003293 ORTHO05D005060 1.1e-42 176.4 100 90.0
BcaC05g25581 Brassica carinata HOM05D003293 ORTHO05D005060 1.1e-42 176.4 100 90.0
A06p12260 Brassica napus HOM05D003293 ORTHO05D005060 1.1e-42 176.4 100 90.0
BraA06t24394Z Brassica rapa HOM05D003293 ORTHO05D005060 1.1e-42 176.4 100 90.0
Ciclev10004800m.g Citrus clementina HOM05D003293 ORTHO05D005060 1.1e-42 176.4 100 91.0
FAN11G0148 Fragaria x ananassa HOM05D003293 ORTHO05D005060 1.4e-42 176.0 100 90.0
Sp1g14530 Schrenkiella parvula HOM05D003293 ORTHO05D005060 1.4e-42 176.0 100 89.0
Cc04_g12410 Coffea canephora HOM05D003293 ORTHO05D005060 1.9e-42 175.6 100 89.0
TWI38G1632 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.9e-42 175.6 100 90.0
Lsat_1_v5_gn_6_47480 Lactuca sativa HOM05D003293 ORTHO05D005060 2.4e-42 175.3 100 90.0
AT1G16350 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 3.2e-42 174.9 100 88.0
Carub.0001s1609 Capsella rubella HOM05D003293 ORTHO05D005060 3.2e-42 174.9 100 88.0
Gohir.A13G206500 Gossypium hirsutum HOM05D003293 ORTHO05D005060 3.2e-42 174.9 100 90.0
Gorai.013G241200 Gossypium raimondii HOM05D003293 ORTHO05D005060 3.2e-42 174.9 100 90.0
MBI02_g32629_MAGBIO Magnolia biondii HOM05D003293 ORTHO05D005060 3.2e-42 174.9 100 91.0
Rhsim10G0161300 Rhododendron simsii HOM05D003293 ORTHO05D005060 3.2e-42 174.9 100 92.0
AL1G28470 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 4.1e-42 174.5 100 87.0
CAN.G641.45 Capsicum annuum HOM05D003293 ORTHO05D005060 4.1e-42 174.5 100 89.0
Duzib268G1306 Durio zibethinus HOM05D003293 ORTHO05D005060 4.1e-42 174.5 100 90.0
Thhalv10018438m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 4.1e-42 174.5 100 88.0
Oeu019711.2 Olea europaea HOM05D003293 ORTHO05D005060 4.1e-42 174.5 100 88.0
Aa31LG7G870 Aethionema arabicum HOM05D003293 ORTHO05D005060 5.4e-42 174.1 100 89.0
COL.COLO4_15126 Corchorus olitorius HOM05D003293 ORTHO05D005060 5.4e-42 174.1 100 90.0
COL.COLO4_18926 Corchorus olitorius HOM05D003293 ORTHO05D005060 5.4e-42 174.1 100 89.0
Lj3g0010257 Lotus japonicus HOM05D003293 ORTHO05D005060 5.4e-42 174.1 100 88.0
Peaxi162Scf00012g02522 Petunia axillaris HOM05D003293 ORTHO05D005060 5.4e-42 174.1 100 89.0
PGSC0003DMG400008158 Solanum tuberosum HOM05D003293 ORTHO05D005060 5.4e-42 174.1 100 90.0
Aqoxy2G00246 Aquilegia oxysepala HOM05D003293 ORTHO05D005060 7.1e-42 173.7 100 88.0
Sopen10g030150 Solanum pennellii HOM05D003293 ORTHO05D005060 7.1e-42 173.7 100 89.0
Manes.03G079800 Manihot esculenta HOM05D003293 ORTHO05D005060 9.2e-42 173.3 100 88.0
QL04p093622 Quercus lobata HOM05D003293 ORTHO05D005060 9.2e-42 173.3 99 88.9
Thecc.09G018800 Theobroma cacao HOM05D003293 ORTHO05D005060 9.2e-42 173.3 100 90.0
Thhalv10007432m.g Eutrema salsugineum HOM05D003293 ORTHO05D005060 1.2e-41 172.9 100 86.0
Gohir.D13G211100 Gossypium hirsutum HOM05D003293 ORTHO05D005060 1.2e-41 172.9 100 88.0
Medtr7g085560 Medicago truncatula HOM05D003293 ORTHO05D005060 1.2e-41 172.9 100 88.0
Solyc10g079500.2 Solanum lycopersicum HOM05D003293 ORTHO05D005060 1.2e-41 172.9 100 89.0
TWI59G0396 Tripterygium wilfordii HOM05D003293 ORTHO05D005060 1.2e-41 172.9 100 88.0
ClCG09G022840 Citrullus lanatus HOM05D003293 ORTHO05D005060 1.6e-41 172.6 100 88.0
Gorai.013G251500 Gossypium raimondii HOM05D003293 ORTHO05D005060 1.6e-41 172.6 100 89.0
TAR627G0458 Trochodendron aralioides HOM05D003293 ORTHO05D005060 1.6e-41 172.6 100 89.0
Cfa019380 Carpinus fangiana HOM05D003293 ORTHO05D005060 2.1e-41 172.2 100 87.0
GSVIVG01036725001 Vitis vinifera HOM05D003293 ORTHO05D005060 2.1e-41 172.2 100 91.0
Zm00001eb057300 Zea mays HOM05D003293 ORTHO05D005060 2.1e-41 172.2 100 86.0
MELO3C012593.2 Cucumis melo HOM05D003293 ORTHO05D005060 2.7e-41 171.8 100 87.0
Glyma.08G164100 Glycine max HOM05D003293 ORTHO05D005060 2.7e-41 171.8 100 87.0
Lalb_Chr01g0015541 Lupinus albus HOM05D003293 ORTHO05D005060 2.7e-41 171.8 100 87.0
Nitab4.5_0000515g0130 Nicotiana tabacum HOM05D003293 ORTHO05D005060 2.7e-41 171.8 100 87.0
unitig_748.g7610 Utricularia gibba HOM05D003293 ORTHO05D005060 2.7e-41 171.8 100 87.0
VMungo1080G1291 Vigna mungo HOM05D003293 ORTHO05D005060 2.7e-41 171.8 100 87.0
Ca_08263_v3 Cicer arietinum L. HOM05D003293 ORTHO05D005060 3.5e-41 171.4 100 87.0
DCAR_016845 Daucus carota HOM05D003293 ORTHO05D005060 3.5e-41 171.4 100 87.0
Lj3C543G2 Lonicera japonica HOM05D003293 ORTHO05D005060 3.5e-41 171.4 100 88.0
Nitab4.5_0005442g0040 Nicotiana tabacum HOM05D003293 ORTHO05D005060 4.6e-41 171.0 100 87.0
AL2G40080 Arabidopsis lyrata HOM05D003293 ORTHO05D005060 6.0e-41 170.6 100 87.0
AUR62036933 Chenopodium quinoa HOM05D003293 ORTHO05D005060 7.8e-41 170.2 100 87.0
Glyma.15G263100 Glycine max HOM05D003293 ORTHO05D005060 7.8e-41 170.2 100 87.0
Lalb_Chr20g0108441 Lupinus albus HOM05D003293 ORTHO05D005060 7.8e-41 170.2 100 87.0
Phvul.005G048700 Phaseolus vulgaris HOM05D003293 ORTHO05D005060 7.8e-41 170.2 100 86.0
PGR142G2665 Punica granatum HOM05D003293 ORTHO05D005060 7.8e-41 170.2 100 89.0
Aa31LG4G1560 Aethionema arabicum HOM05D003293 ORTHO05D005060 1.0e-40 169.9 100 86.0
Ah.01g017820 Amaranthus hybridus HOM05D003293 ORTHO05D005060 1.0e-40 169.9 100 86.0
CsaV3_7G023050 Cucumis sativus L. HOM05D003293 ORTHO05D005060 1.0e-40 169.9 100 86.0
TPR.G5871 Trifolium pratense HOM05D003293 ORTHO05D005060 1.0e-40 169.9 100 86.0
AT1G79470 Arabidopsis thaliana HOM05D003293 ORTHO05D005060 1.3e-40 169.5 100 87.0
AUR62011946 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.3e-40 169.5 100 86.0
Potri.008G082800 Populus trichocarpa HOM05D003293 ORTHO05D005060 1.3e-40 169.5 100 87.0
BcaC08g47508 Brassica carinata HOM05D003293 ORTHO05D005060 1.7e-40 169.1 100 86.0
BcaC08g47510 Brassica carinata HOM05D003293 ORTHO05D005060 1.7e-40 169.1 100 86.0
A07p44530 Brassica napus HOM05D003293 ORTHO05D005060 1.7e-40 169.1 100 86.0
C06p53360 Brassica napus HOM05D003293 ORTHO05D005060 1.7e-40 169.1 100 86.0
BolC6t40353H Brassica oleracea HOM05D003293 ORTHO05D005060 1.7e-40 169.1 100 86.0
Gohir.D13G220550 Gossypium hirsutum HOM05D003293 ORTHO05D022137 1.7e-40 169.1 100 88.0
Lalb_Chr25g0284391 Lupinus albus HOM05D003293 ORTHO05D005060 1.7e-40 169.1 100 86.0
CARHR073130 Cardamine hirsuta HOM05D003293 ORTHO05D005060 2.3e-40 168.7 100 86.0
AUR62032176 Chenopodium quinoa HOM05D003293 ORTHO05D005060 2.3e-40 168.7 100 86.0
Sp5g34520 Schrenkiella parvula HOM05D003293 ORTHO05D005060 2.3e-40 168.7 100 85.0
Sed0007161 Sechium edule HOM05D003293 ORTHO05D005060 2.3e-40 168.7 100 86.0
CARHR016820 Cardamine hirsuta HOM05D003293 ORTHO05D005060 3.0e-40 168.3 100 86.0
Hund00106 Selenicereus undatus HOM05D003293 ORTHO05D005060 3.0e-40 168.3 100 85.0
BraA07t31963Z Brassica rapa HOM05D003293 ORTHO05D005060 3.9e-40 167.9 100 85.0
Psat3g088880 Pisum sativum HOM05D003293 ORTHO05D005060 5.1e-40 167.5 100 85.0
Potri.010G173600 Populus trichocarpa HOM05D003293 ORTHO05D005060 5.1e-40 167.5 100 86.0
Sabra10G0133500 Salix brachista HOM05D003293 ORTHO05D005060 6.6e-40 167.2 100 86.0
Nn2g15373 Nelumbo nucifera HOM05D003293 ORTHO05D005060 8.6e-40 166.8 100 84.0
Carub.0002s2633 Capsella rubella HOM05D003293 ORTHO05D005060 1.1e-39 166.4 100 84.0
AUR62005030 Chenopodium quinoa HOM05D003293 ORTHO05D005060 1.1e-39 166.4 100 84.0
Migut.M01507 Erythranthe guttata HOM05D003293 ORTHO05D005060 1.9e-39 165.6 99 83.8
PSO063G6375 Papaver somniferum HOM05D003293 ORTHO05D005060 2.5e-39 165.2 100 83.0
HPP92_020646 Vanilla planifolia HOM05D003293 ORTHO05D005060 2.5e-39 165.2 100 83.0
EL10Ac2g03658 Beta vulgaris HOM05D003293 ORTHO05D005060 3.3e-39 164.9 100 83.0
Eucgr.I02089 Eucalyptus grandis HOM05D003293 ORTHO05D005060 4.3e-39 164.5 100 83.0
Hma1.2p1_0142F.1_g064350 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 4.3e-39 164.5 94 88.3
Eucgr.E02909 Eucalyptus grandis HOM05D003293 ORTHO05D005060 7.3e-39 163.7 100 84.0
Nitab4.5_0003468g0030 Nicotiana tabacum HOM05D003293 ORTHO05D005060 7.3e-39 163.7 95 86.3
CDE09G0953 Ceratophyllum demersum HOM05D003293 ORTHO05D005060 1.6e-38 162.5 100 82.0
PSO017G3619 Papaver somniferum HOM05D003293 ORTHO05D005060 8.1e-38 160.2 100 80.0
Sabra08G0061300 Salix brachista HOM05D003293 ORTHO05D005060 1.1e-37 159.8 109 78.9
arahy.Tifrunner.gnm1.ann1.59CN8W Arachis hypogaea HOM05D003293 ORTHO05D005060 1.2e-36 156.4 100 83.0
ATR0665G286 Amborella trichopoda HOM05D003293 ORTHO05D005060 3.8e-35 151.4 100 75.0
SMO361G0668 Selaginella moellendorffii HOM05D003293 ORTHO05D005060 1.4e-34 149.4 100 75.0
ECA232G2754 Erigeron canadensis HOM05D003293 ORTHO05D005060 5.4e-34 147.5 83 90.4
SEGI_05687 Sequoiadendron giganteum HOM05D003293 ORTHO05D005060 7.1e-34 147.1 100 76.0
Pp3c1_34070 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.2e-33 146.4 100 73.0
Pp3c1_34170 Physcomitrium patens HOM05D003293 ORTHO05D005060 1.2e-33 146.4 100 73.0
Pp3c14_26610 Physcomitrium patens HOM05D003293 ORTHO05D005060 2.1e-33 145.6 100 73.0
AagrBONN_evm.TU.Sc2ySwM_362.951 Anthoceros agrestis HOM05D003293 ORTHO05D005060 6.6e-32 140.6 100 69.0
Mapoly0102s0045 Marchantia polymorpha HOM05D003293 ORTHO05D005060 8.1e-30 133.7 100 66.0
Os03g0780500 Oryza sativa ssp. japonica HOM05D003293 ORTHO05D005060 1.8e-29 132.5 77 85.7
Cpa.g.c45345 Carica papaya HOM05D003293 ORTHO05D005060 5.3e-29 131.0 77 87.0
Haze_07768 Corylus avellana HOM05D003293 ORTHO05D005060 5.3e-29 131.0 76 86.8
CBR_g30467 Chara braunii HOM05D003293 ORTHO05D005060 9.0e-29 130.2 100 66.0
Rhsim01G0231900 Rhododendron simsii HOM05D003293 ORTHO05D022137 2.4e-26 122.1 98 68.4
PRCOL_00001751 Prasinoderma coloniale HOM05D003293 ORTHO05D005060 7.1e-26 120.6 100 61.0
Eucgr.L02511 Eucalyptus grandis HOM05D003293 ORTHO05D005060 9.3e-26 120.2 74 79.7
Cre14.g614300 Chlamydomonas reinhardtii HOM05D003293 ORTHO05D005060 1.2e-25 119.8 100 59.0
Zm00001eb059650 Zea mays HOM05D003293 ORTHO05D005060 2.1e-25 119.0 100 66.0
MCO03G303 Micromonas commoda HOM05D003293 ORTHO05D005060 1.7e-24 115.9 100 57.0
Haze_26254 Corylus avellana HOM05D003293 ORTHO05D005060 4.6e-17 91.3 105 49.5
Zm00001eb213620 Zea mays HOM05D003293 ORTHO05D005060 4.6e-17 91.3 56 78.6
Hma1.2p1_0142F.1_g064360 Hydrangea macrophylla HOM05D003293 ORTHO05D022137 1.0e-16 90.1 99 55.6
CsaV3_3G034300 Cucumis sativus L. HOM05D003293 ORTHO05D022137 2.5e-15 85.5 61 68.9
BcaB02g06616 Brassica carinata HOM05D003293 ORTHO05D005060 7.4e-15 84.0 63 68.3


User provided reference genes

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