Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007119 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.9e-48 194.9 98 100.0
CSS0011226 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.3e-35 152.9 114 72.8
CSS0025966 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 1.3e-35 152.9 114 72.8
Actinidia17766 Actinidia chinensis HOM05D006901 ORTHO05D008582 3.3e-28 128.3 113 62.8
Actinidia15615 Actinidia chinensis HOM05D006901 ORTHO05D008582 1.3e-27 126.3 113 61.9
Dinv02470 Davidia involucrata HOM05D006901 ORTHO05D008582 2.2e-27 125.6 114 61.4
CSS0023453 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 9.1e-26 120.2 75 78.7
Hma1.2p1_0678F.1_g202120 Hydrangea macrophylla HOM05D006901 ORTHO05D008582 1.0e-24 116.7 115 56.5
Solyc04g072038.1 Solanum lycopersicum HOM05D006901 ORTHO05D008582 1.7e-24 115.9 114 56.1
Sopen04g028100 Solanum pennellii HOM05D006901 ORTHO05D008582 1.7e-24 115.9 114 56.1
Nitab4.5_0003178g0070 Nicotiana tabacum HOM05D006901 ORTHO05D008582 3.2e-23 111.7 114 55.3
PGSC0003DMG400025056 Solanum tuberosum HOM05D006901 ORTHO05D008582 3.2e-23 111.7 114 55.3
Cc10_g06470 Coffea canephora HOM05D006901 ORTHO05D008582 2.7e-22 108.6 110 54.5
Nitab4.5_0003443g0040 Nicotiana tabacum HOM05D006901 ORTHO05D008582 2.7e-22 108.6 114 54.4
Oeu017620.1 Olea europaea HOM05D006901 ORTHO05D008582 1.4e-21 106.3 110 50.0
MSTRG.22112 Avicennia marina HOM05D006901 ORTHO05D008582 8.8e-21 103.6 111 48.6
Lj7E386T0 Lonicera japonica HOM05D006901 ORTHO05D008582 1.5e-20 102.8 91 60.4
MD10G1037700 Malus domestica HOM05D006901 ORTHO05D008582 3.3e-20 101.7 115 50.4
HanXRQChr02g0041271 Helianthus annuus HOM05D006901 ORTHO05D008582 4.4e-20 101.3 114 52.6
Rhsim06G0092600 Rhododendron simsii HOM05D006901 ORTHO05D008582 1.7e-19 99.4 115 54.8
Haze_17820 Corylus avellana HOM05D006901 ORTHO05D008582 2.8e-19 98.6 114 51.8
CiPaw.16G007900 Carya illinoinensis HOM05D006901 ORTHO05D008582 3.7e-19 98.2 114 50.9
Duzib041G0277 Durio zibethinus HOM05D006901 ORTHO05D008582 6.3e-19 97.4 116 50.0
Lsat_1_v5_gn_1_5120 Lactuca sativa HOM05D006901 ORTHO05D008582 6.3e-19 97.4 95 56.8
TAR376G0851 Trochodendron aralioides HOM05D006901 ORTHO05D008582 6.3e-19 97.4 120 50.8
Nn6g32189 Nelumbo nucifera HOM05D006901 ORTHO05D008582 8.2e-19 97.1 116 50.9
ECA247G1717 Erigeron canadensis HOM05D006901 ORTHO05D008582 1.4e-18 96.3 102 52.9
Nn5g28858 Nelumbo nucifera HOM05D006901 ORTHO05D008582 3.1e-18 95.1 120 50.0
SalBow7G3034 Salvia bowleyana HOM05D006901 ORTHO05D008582 4.1e-18 94.7 110 48.2
MD05G1035400 Malus domestica HOM05D006901 ORTHO05D008582 7.0e-18 94.0 115 48.7
Peaxi162Scf00360g00917 Petunia axillaris HOM05D006901 ORTHO05D008582 7.0e-18 94.0 106 49.1
SGA_v2.0_scaffold82G26198 Striga asiatica HOM05D006901 ORTHO05D008582 1.2e-17 93.2 98 52.0
Gohir.A06G111900 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.5e-17 91.7 117 47.0
Gohir.D06G116100 Gossypium hirsutum HOM05D006901 ORTHO05D008582 3.5e-17 91.7 117 47.0
Gorai.010G133900 Gossypium raimondii HOM05D006901 ORTHO05D008582 3.5e-17 91.7 117 47.0
SalBow8G2041 Salvia bowleyana HOM05D006901 ORTHO05D008582 3.5e-17 91.7 110 47.3
Prupe.8G043100 Prunus persica HOM05D006901 ORTHO05D008582 4.5e-17 91.3 116 48.3
Duzib116G0108 Durio zibethinus HOM05D006901 ORTHO05D008582 7.7e-17 90.5 116 45.7
TPR.G792 Trifolium pratense HOM05D006901 ORTHO05D008582 1.7e-16 89.4 113 48.7
CAN.G1183.19 Capsicum annuum HOM05D006901 ORTHO05D008582 2.2e-16 89.0 112 50.0
FvH4_2g12890 Fragaria vesca HOM05D006901 ORTHO05D008582 2.2e-16 89.0 109 50.5
FAN24G1802 Fragaria x ananassa HOM05D006901 ORTHO05D008582 2.2e-16 89.0 109 50.5
arahy.Tifrunner.gnm1.ann1.96Y3Q8 Arachis hypogaea HOM05D006901 ORTHO05D008582 2.9e-16 88.6 87 57.5
arahy.Tifrunner.gnm1.ann1.YZ7MCJ Arachis hypogaea HOM05D006901 ORTHO05D008582 2.9e-16 88.6 87 57.5
CSS0012150 Camellia sinensis var. sinensis HOM05D006901 ORTHO05D008582 2.9e-16 88.6 82 59.8
AL2G31300 Arabidopsis lyrata HOM05D006901 ORTHO05D008582 5.0e-16 87.8 87 55.2
Thecc.08G162300 Theobroma cacao HOM05D006901 ORTHO05D008582 5.0e-16 87.8 116 46.6
CANSAT25G0969 Cannabis sativa HOM05D006901 ORTHO05D008582 6.5e-16 87.4 120 45.8
Glyma.10G220600 Glycine max HOM05D006901 ORTHO05D008582 6.5e-16 87.4 87 56.3
Medtr1g097570 Medicago truncatula HOM05D006901 ORTHO05D008582 6.5e-16 87.4 113 47.8
PGR042G3646 Punica granatum HOM05D006901 ORTHO05D008582 6.5e-16 87.4 87 56.3
PGR102G0180 Punica granatum HOM05D006901 ORTHO05D008582 6.5e-16 87.4 87 56.3
QL02p036605 Quercus lobata HOM05D006901 ORTHO05D008582 6.5e-16 87.4 112 47.3
QL02p037117 Quercus lobata HOM05D006901 ORTHO05D008582 6.5e-16 87.4 112 47.3
AT1G71730 Arabidopsis thaliana HOM05D006901 ORTHO05D008582 8.5e-16 87.0 86 54.7
Carub.0002s1849 Capsella rubella HOM05D006901 ORTHO05D008582 8.5e-16 87.0 86 55.8
GSVIVG01013704001 Vitis vinifera HOM05D006901 ORTHO05D008582 8.5e-16 87.0 113 46.9
PSO675G2506 Papaver somniferum HOM05D006901 ORTHO05D008582 1.1e-15 86.7 86 58.1
Psat6g189960 Pisum sativum HOM05D006901 ORTHO05D008582 1.1e-15 86.7 86 57.0
Sp5g26760 Schrenkiella parvula HOM05D006901 ORTHO05D008582 1.5e-15 86.3 86 54.7
Phvul.007G084500 Phaseolus vulgaris HOM05D006901 ORTHO05D008582 1.9e-15 85.9 87 55.2
Aa31LG4G8920 Aethionema arabicum HOM05D006901 ORTHO05D008582 2.5e-15 85.5 86 54.7
Glyma.20G171000 Glycine max HOM05D006901 ORTHO05D008582 2.5e-15 85.5 86 54.7
Lj5g0019877 Lotus japonicus HOM05D006901 ORTHO05D008582 2.5e-15 85.5 116 43.1
Lalb_Chr21g0305611 Lupinus albus HOM05D006901 ORTHO05D008582 2.5e-15 85.5 114 47.4
RcHm_v2.0_Chr6g0273991 Rosa chinensis HOM05D006901 ORTHO05D008582 2.5e-15 85.5 111 48.6
BcaC08g46599 Brassica carinata HOM05D006901 ORTHO05D008582 3.2e-15 85.1 86 53.5
A07p37880 Brassica napus HOM05D006901 ORTHO05D008582 3.2e-15 85.1 86 53.5
C06p45780 Brassica napus HOM05D006901 ORTHO05D008582 3.2e-15 85.1 86 53.5
BraA07t31353Z Brassica rapa HOM05D006901 ORTHO05D008582 3.2e-15 85.1 86 53.5
CARHR291060 Cardamine hirsuta HOM05D006901 ORTHO05D008582 3.2e-15 85.1 86 51.2
FAN15G3138 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.2e-15 85.1 109 49.5
FAN20G0005 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.2e-15 85.1 109 49.5
FAN27G3188 Fragaria x ananassa HOM05D006901 ORTHO05D008582 3.2e-15 85.1 109 49.5
ATR1120G022 Amborella trichopoda HOM05D006901 ORTHO05D008582 4.2e-15 84.7 84 54.8
Thhalv10019220m.g Eutrema salsugineum HOM05D006901 ORTHO05D008582 4.2e-15 84.7 86 53.5
PSO541G2877 Papaver somniferum HOM05D006901 ORTHO05D008582 4.2e-15 84.7 86 57.0
HPP92_002808 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.2e-15 84.7 87 52.9
HPP92_002865 Vanilla planifolia HOM05D006901 ORTHO05D008582 4.2e-15 84.7 87 52.9
Ca_10653_v3 Cicer arietinum L. HOM05D006901 ORTHO05D008582 5.5e-15 84.3 87 55.2
Duzib093G0981 Durio zibethinus HOM05D006901 ORTHO05D008582 5.5e-15 84.3 116 44.0
EL10Ac4g07716 Beta vulgaris HOM05D006901 ORTHO05D008582 9.4e-15 83.6 113 45.1
BolC6t39630H Brassica oleracea HOM05D006901 ORTHO05D008582 9.4e-15 83.6 86 52.3
Manes.18G095700 Manihot esculenta HOM05D006901 ORTHO05D008582 9.4e-15 83.6 87 54.0
MELO3C019969.2 Cucumis melo HOM05D006901 ORTHO05D008582 1.2e-14 83.2 120 45.0
THA.LOC104810483 Tarenaya hassleriana HOM05D006901 ORTHO05D008582 1.2e-14 83.2 86 52.3
Cpa.g.sc26.114 Carica papaya HOM05D006901 ORTHO05D008582 1.6e-14 82.8 87 54.0
Potri.005G198100 Populus trichocarpa HOM05D006901 ORTHO05D008582 2.1e-14 82.4 87 52.9
TWI60G0595 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 2.1e-14 82.4 87 52.9
unitig_32.g11111 Utricularia gibba HOM05D006901 ORTHO05D008582 2.1e-14 82.4 111 45.0
EL10Ac1g01617 Beta vulgaris HOM05D006901 ORTHO05D008582 2.7e-14 82.0 113 44.2
ClCG08G007260 Citrullus lanatus HOM05D006901 ORTHO05D008582 2.7e-14 82.0 86 53.5
Potri.002G063100 Populus trichocarpa HOM05D006901 ORTHO05D008582 3.6e-14 81.6 87 52.9
Sed0007149 Sechium edule HOM05D006901 ORTHO05D008582 3.6e-14 81.6 86 53.5
TWI34G1320 Tripterygium wilfordii HOM05D006901 ORTHO05D008582 3.6e-14 81.6 114 46.5
VMungo0720G0575 Vigna mungo HOM05D006901 ORTHO05D008582 8.0e-14 80.5 87 52.9
EL10Ac1g01620 Beta vulgaris HOM05D006901 ORTHO05D008582 1.0e-13 80.1 87 50.6
Sc02g0003760 Simmondsia chinensis HOM05D006901 ORTHO05D008582 1.8e-13 79.3 86 51.2
Ah.16g108540 Amaranthus hybridus HOM05D006901 ORTHO05D008582 2.3e-13 79.0 85 51.8
CsaV3_6G004930 Cucumis sativus L. HOM05D006901 ORTHO05D008582 3.0e-13 78.6 86 51.2
Eucgr.F02679 Eucalyptus grandis HOM05D006901 ORTHO05D008582 3.0e-13 78.6 81 53.1
Sabra02G0050800 Salix brachista HOM05D006901 ORTHO05D008582 3.0e-13 78.6 87 51.7
SEGI_14424 Sequoiadendron giganteum HOM05D006901 ORTHO05D008582 3.0e-13 78.6 86 50.0
Ciclev10002626m.g Citrus clementina HOM05D006901 ORTHO05D008582 4.0e-13 78.2 86 53.5
Lj5g0009364 Lotus japonicus HOM05D006901 ORTHO05D008582 8.8e-13 77.0 103 43.7
Sabra05G0150900 Salix brachista HOM05D006901 ORTHO05D008582 3.4e-12 75.1 84 50.0
AagrBONN_evm.TU.Sc2ySwM_228.5132 Anthoceros agrestis HOM05D006901 ORTHO05D008582 5.7e-12 74.3 107 43.0
Atru.chr13.1989 Acer truncatum HOM05D006901 ORTHO05D008582 9.8e-12 73.6 85 50.6
Pp3c17_20520 Physcomitrium patens HOM05D006901 ORTHO05D008582 1.3e-11 73.2 85 45.9
Os05g0182000 Oryza sativa ssp. japonica HOM05D006901 ORTHO05D008582 8.3e-11 70.5 83 47.0
Zm00001eb346910 Zea mays HOM05D006901 ORTHO05D008582 1.8e-10 69.3 83 47.0
SMO351G0406 Selaginella moellendorffii HOM05D006901 ORTHO05D008582 5.4e-10 67.8 83 45.8
DCAR_001194 Daucus carota HOM05D006901 ORTHO05D008582 3.5e-09 65.1 63 58.7
CBR_g54341 Chara braunii HOM05D006901 ORTHO05D008582 3.6e-06 55.1 105 34.3


User provided reference genes

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