Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007113 Camellia sinensis var. sinensis HOM05D003299 ORTHO05D003811 2.3e-38 161.8 82 100.0
vmacro07125 Vaccinium macrocarpon HOM05D003299 ORTHO05D003811 4.5e-10 67.8 58 62.1
CSS0049751 Camellia sinensis var. sinensis HOM05D003299 ORTHO05D003811 5.8e-10 67.4 58 63.8
Peaxi162Scf00296g00715 Petunia axillaris HOM05D003299 ORTHO05D003811 5.8e-10 67.4 58 58.6
Migut.F01723 Erythranthe guttata HOM05D003299 ORTHO05D003811 7.6e-10 67.0 58 60.3
Actinidia06742 Actinidia chinensis HOM05D003299 ORTHO05D003811 1.0e-09 66.6 58 62.1
CAN.G321.39 Capsicum annuum HOM05D003299 ORTHO05D003811 1.0e-09 66.6 58 60.3
Solyc11g008450.2 Solanum lycopersicum HOM05D003299 ORTHO05D003811 1.0e-09 66.6 58 60.3
Sopen11g004240 Solanum pennellii HOM05D003299 ORTHO05D003811 1.0e-09 66.6 58 60.3
PGSC0003DMG400007425 Solanum tuberosum HOM05D003299 ORTHO05D003811 1.0e-09 66.6 58 60.3
MSTRG.8135 Avicennia marina HOM05D003299 ORTHO05D003811 1.3e-09 66.2 58 63.8
SGA_v2.0_scaffold51G18707 Striga asiatica HOM05D003299 ORTHO05D003811 1.7e-09 65.9 58 58.6
Nitab4.5_0004325g0060 Nicotiana tabacum HOM05D003299 ORTHO05D003811 2.2e-09 65.5 59 57.6
Nitab4.5_0004385g0010 Nicotiana tabacum HOM05D003299 ORTHO05D003811 2.9e-09 65.1 58 58.6
Rhsim03G0117200 Rhododendron simsii HOM05D003299 ORTHO05D003811 5.0e-09 64.3 63 57.1
Cc02_g11050 Coffea canephora HOM05D003299 ORTHO05D003811 6.5e-09 63.9 59 57.6
DCAR_019092 Daucus carota HOM05D003299 ORTHO05D003811 6.5e-09 63.9 58 56.9
ECA232G0110 Erigeron canadensis HOM05D003299 ORTHO05D003811 1.1e-08 63.2 60 55.0
Lsat_1_v5_gn_9_68280 Lactuca sativa HOM05D003299 ORTHO05D003811 1.1e-08 63.2 63 55.6
Dinv31216 Davidia involucrata HOM05D003299 ORTHO05D003811 1.4e-08 62.8 61 55.7
Haze_16847 Corylus avellana HOM05D003299 ORTHO05D003811 2.5e-08 62.0 63 52.4
QL08p054943 Quercus lobata HOM05D003299 ORTHO05D003811 2.5e-08 62.0 61 54.1
Potri.008G036400 Populus trichocarpa HOM05D003299 ORTHO05D003811 3.2e-08 61.6 58 55.2
TWI63G0314 Tripterygium wilfordii HOM05D003299 ORTHO05D003811 3.2e-08 61.6 58 55.2
Eucgr.J01067 Eucalyptus grandis HOM05D003299 ORTHO05D003811 4.2e-08 61.2 58 55.2
Hma1.2p1_0438F.1_g153110 Hydrangea macrophylla HOM05D003299 ORTHO05D003811 4.2e-08 61.2 58 56.9
Duzib114G0224 Durio zibethinus HOM05D003299 ORTHO05D003811 5.5e-08 60.8 59 54.2
RcHm_v2.0_Chr1g0362831 Rosa chinensis HOM05D003299 ORTHO05D003811 9.3e-08 60.1 58 53.4
TAR623G0928 Trochodendron aralioides HOM05D003299 ORTHO05D003811 1.2e-07 59.7 58 51.7
Gohir.A05G294600 Gossypium hirsutum HOM05D003299 ORTHO05D003811 1.6e-07 59.3 58 53.4
Ciclev10032804m.g Citrus clementina HOM05D003299 ORTHO05D003811 2.1e-07 58.9 57 54.4
Phvul.007G239200 Phaseolus vulgaris HOM05D003299 ORTHO05D003811 2.1e-07 58.9 58 53.4
Thecc.10G079700 Theobroma cacao HOM05D003299 ORTHO05D003811 2.1e-07 58.9 58 51.7
HanXRQChr09g0246861 Helianthus annuus HOM05D003299 ORTHO05D003811 2.7e-07 58.5 58 55.2
Aqoxy2G01795 Aquilegia oxysepala HOM05D003299 ORTHO05D003811 4.6e-07 57.8 58 51.7
Glyma.02G161200 Glycine max HOM05D003299 ORTHO05D003811 6.1e-07 57.4 58 51.7
Gohir.D05G295200 Gossypium hirsutum HOM05D003299 ORTHO05D003811 6.1e-07 57.4 58 51.7
Gorai.009G311900 Gossypium raimondii HOM05D003299 ORTHO05D003811 6.1e-07 57.4 58 51.7
Medtr1g050322 Medicago truncatula HOM05D003299 ORTHO05D003811 6.1e-07 57.4 58 53.4
CiPaw.01G270000 Carya illinoinensis HOM05D003299 ORTHO05D003811 7.9e-07 57.0 58 51.7
Lj6g0007833 Lotus japonicus HOM05D003299 ORTHO05D003811 7.9e-07 57.0 57 52.6
Sabra08G0024500 Salix brachista HOM05D003299 ORTHO05D003811 7.9e-07 57.0 57 54.4
TPR.G10648 Trifolium pratense HOM05D003299 ORTHO05D003811 7.9e-07 57.0 63 47.6
QL05p048812 Quercus lobata HOM05D003299 ORTHO05D014176 1.0e-06 56.6 58 51.7
FAN01G0418 Fragaria x ananassa HOM05D003299 ORTHO05D003811 1.3e-06 56.2 58 50.0
FAN10G1005 Fragaria x ananassa HOM05D003299 ORTHO05D003811 1.3e-06 56.2 58 50.0
FAN10G4229 Fragaria x ananassa HOM05D003299 ORTHO05D003811 1.3e-06 56.2 58 50.0
MD01G1104800 Malus domestica HOM05D003299 ORTHO05D003811 1.3e-06 56.2 58 51.7
PSO339G5755 Papaver somniferum HOM05D003299 ORTHO05D003811 1.3e-06 56.2 58 48.3
Psat6g094000 Pisum sativum HOM05D003299 ORTHO05D003811 1.3e-06 56.2 58 51.7
GSVIVG01016235001 Vitis vinifera HOM05D003299 ORTHO05D003811 1.3e-06 56.2 58 50.0
Nn2g13758 Nelumbo nucifera HOM05D003299 ORTHO05D003811 2.3e-06 55.5 57 52.6
arahy.Tifrunner.gnm1.ann1.A87VPW Arachis hypogaea HOM05D003299 ORTHO05D003811 3.0e-06 55.1 58 48.3
arahy.Tifrunner.gnm1.ann1.JYTW4X Arachis hypogaea HOM05D003299 ORTHO05D003811 3.0e-06 55.1 58 48.3
CARHR209020 Cardamine hirsuta HOM05D003299 ORTHO05D003811 3.0e-06 55.1 58 48.3
Thhalv10014762m.g Eutrema salsugineum HOM05D003299 ORTHO05D003811 3.0e-06 55.1 58 48.3
Sp6g38490 Schrenkiella parvula HOM05D003299 ORTHO05D003811 3.0e-06 55.1 58 50.0
A10p31900 Brassica napus HOM05D003299 ORTHO05D003811 3.9e-06 54.7 61 45.9
FAN03G3169 Fragaria x ananassa HOM05D003299 ORTHO05D003811 3.9e-06 54.7 58 48.3
Lalb_Chr21g0313761 Lupinus albus HOM05D003299 ORTHO05D003811 3.9e-06 54.7 58 50.0
HPP92_020760 Vanilla planifolia HOM05D003299 ORTHO05D003811 3.9e-06 54.7 57 50.9
THA.LOC104816424 Tarenaya hassleriana HOM05D003299 ORTHO05D003811 5.1e-06 54.3 58 48.3
Mapoly0073s0015 Marchantia polymorpha HOM05D003299 ORTHO05D003811 6.7e-06 53.9 58 53.4
FAN06G1076 Fragaria x ananassa HOM05D003299 ORTHO05D003811 8.7e-06 53.5 59 47.5
FAN06G4627 Fragaria x ananassa HOM05D003299 ORTHO05D003811 8.7e-06 53.5 58 48.3
Mapoly0058s0054 Marchantia polymorpha HOM05D003299 ORTHO05D003811 8.7e-06 53.5 58 51.7


User provided reference genes

Program Settings