Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007105 Camellia sinensis var. sinensis HOM05D003184 ORTHO05D000394 7.0e-60 233.8 122 100.0
CSS0009721 Camellia sinensis var. sinensis HOM05D003184 ORTHO05D000394 1.1e-44 183.3 111 88.3
Actinidia36831 Actinidia chinensis HOM05D003184 ORTHO05D000394 4.6e-27 124.8 106 60.4
Actinidia08895 Actinidia chinensis HOM05D003184 ORTHO05D000394 7.8e-27 124.0 112 58.9
CSS0031765 Camellia sinensis var. sinensis HOM05D003184 ORTHO05D000394 2.5e-25 119.0 106 62.3
Dinv23196 Davidia involucrata HOM05D003184 ORTHO05D000394 1.3e-24 116.7 106 57.5
Actinidia18321 Actinidia chinensis HOM05D003184 ORTHO05D000394 1.6e-24 116.3 114 59.6
Dinv11214 Davidia involucrata HOM05D003184 ORTHO05D000394 2.8e-24 115.5 110 53.6
Rhsim08G0194800 Rhododendron simsii HOM05D003184 ORTHO05D000394 1.3e-21 106.7 112 54.5
vmacro19159 Vaccinium macrocarpon HOM05D003184 ORTHO05D000394 8.4e-21 104.0 116 51.7
Actinidia25537 Actinidia chinensis HOM05D003184 ORTHO05D000394 1.4e-20 103.2 106 54.7
Nitab4.5_0000033g0210 Nicotiana tabacum HOM05D003184 ORTHO05D000394 9.3e-20 100.5 104 51.9
Nitab4.5_0000854g0010 Nicotiana tabacum HOM05D003184 ORTHO05D000394 1.6e-19 99.8 111 50.5
Solyc06g072530.3 Solanum lycopersicum HOM05D003184 ORTHO05D000394 7.9e-19 97.4 104 49.0
Sopen06g028900 Solanum pennellii HOM05D003184 ORTHO05D000394 1.0e-18 97.1 104 49.0
Lj9A484T61 Lonicera japonica HOM05D003184 ORTHO05D000394 1.7e-18 96.3 112 46.4
Solyc06g072550.3 Solanum lycopersicum HOM05D003184 ORTHO05D000394 1.5e-17 93.2 94 54.3
Sopen06g028910 Solanum pennellii HOM05D003184 ORTHO05D000394 1.5e-17 93.2 94 54.3
PGSC0003DMG400026945 Solanum tuberosum HOM05D003184 ORTHO05D000394 1.5e-17 93.2 104 47.1
SGA_v2.0_scaffold40G15593 Striga asiatica HOM05D003184 ORTHO05D000394 3.3e-17 92.0 104 49.0
Nitab4.5_0017715g0010 Nicotiana tabacum HOM05D003184 ORTHO05D000394 4.3e-17 91.7 104 47.1
Rhsim12G0178600 Rhododendron simsii HOM05D003184 ORTHO05D000394 4.3e-17 91.7 106 50.0
Cc04_g09480 Coffea canephora HOM05D003184 ORTHO05D000394 5.6e-17 91.3 111 46.8
PGSC0003DMG400026944 Solanum tuberosum HOM05D003184 ORTHO05D000394 9.6e-17 90.5 94 53.2
Oeu030646.1 Olea europaea HOM05D003184 ORTHO05D000394 4.8e-16 88.2 95 46.3
Peaxi162Scf00171g01125 Petunia axillaris HOM05D003184 ORTHO05D000394 4.8e-16 88.2 104 45.2
TAR622G0113 Trochodendron aralioides HOM05D003184 ORTHO05D000394 4.8e-16 88.2 112 41.1
Peaxi162Scf01064g00117 Petunia axillaris HOM05D003184 ORTHO05D000394 1.1e-15 87.0 109 44.0
Thecc.03G137300 Theobroma cacao HOM05D003184 ORTHO05D000394 1.1e-15 87.0 106 43.4
Nitab4.5_0001825g0030 Nicotiana tabacum HOM05D003184 ORTHO05D000394 1.4e-15 86.7 109 43.1
TWI23G0846 Tripterygium wilfordii HOM05D003184 ORTHO05D000394 1.8e-15 86.3 98 43.9
Peaxi162Scf01064g00114 Petunia axillaris HOM05D003184 ORTHO05D000394 3.1e-15 85.5 94 48.9
Migut.O00352 Erythranthe guttata HOM05D003184 ORTHO05D000394 4.0e-15 85.1 102 48.0
HanXRQChr16g0498791 Helianthus annuus HOM05D003184 ORTHO05D000394 5.3e-15 84.7 109 39.4
Nitab4.5_0001451g0040 Nicotiana tabacum HOM05D003184 ORTHO05D000394 9.0e-15 84.0 104 42.3
GSVIVG01008618001 Vitis vinifera HOM05D003184 ORTHO05D000394 9.0e-15 84.0 105 43.8
ECA232G0468 Erigeron canadensis HOM05D003184 ORTHO05D000394 2.0e-14 82.8 109 40.4
Lj5A91T55 Lonicera japonica HOM05D003184 ORTHO05D000394 2.0e-14 82.8 111 45.0
MSTRG.22885 Avicennia marina HOM05D003184 ORTHO05D000394 2.6e-14 82.4 103 41.7
TWI14G0265 Tripterygium wilfordii HOM05D003184 ORTHO05D000394 2.6e-14 82.4 108 39.8
CiPaw.11G002400 Carya illinoinensis HOM05D003184 ORTHO05D000394 5.8e-14 81.3 104 43.3
HanXRQChr09g0273611 Helianthus annuus HOM05D003184 ORTHO05D000394 5.8e-14 81.3 109 38.5
Peaxi162Scf01064g00115 Petunia axillaris HOM05D003184 ORTHO05D000394 7.6e-14 80.9 109 44.0
TAR374G1504 Trochodendron aralioides HOM05D003184 ORTHO05D000394 1.7e-13 79.7 91 47.3
MSTRG.4625 Avicennia marina HOM05D003184 ORTHO05D000394 2.2e-13 79.3 104 41.3
Duzib084G1317 Durio zibethinus HOM05D003184 ORTHO05D000394 2.9e-13 79.0 113 40.7
FAN13G0038 Fragaria x ananassa HOM05D003184 ORTHO05D000394 2.9e-13 79.0 106 42.5
SalBow1G6178 Salvia bowleyana HOM05D003184 ORTHO05D000394 2.9e-13 79.0 93 41.9
Prupe.5G144900 Prunus persica HOM05D003184 ORTHO05D000394 3.8e-13 78.6 111 38.7
RcHm_v2.0_Chr7g0189121 Rosa chinensis HOM05D003184 ORTHO05D000394 3.8e-13 78.6 106 43.4
Sc07g0003650 Simmondsia chinensis HOM05D003184 ORTHO05D000394 6.4e-13 77.8 93 39.8
Migut.D01302 Erythranthe guttata HOM05D003184 ORTHO05D000394 8.4e-13 77.4 94 44.7
Nitab4.5_0001825g0040 Nicotiana tabacum HOM05D003184 ORTHO05D000394 8.4e-13 77.4 110 46.4
COL.COLO4_16682 Corchorus olitorius HOM05D003184 ORTHO05D000394 1.9e-12 76.3 114 36.8
Gohir.D11G041000 Gossypium hirsutum HOM05D003184 ORTHO05D000394 3.2e-12 75.5 114 40.4
Gorai.007G044200 Gossypium raimondii HOM05D003184 ORTHO05D000394 3.2e-12 75.5 114 40.4
Lsat_1_v5_gn_4_82801 Lactuca sativa HOM05D003184 ORTHO05D000394 3.2e-12 75.5 106 36.8
Gohir.A11G037800 Gossypium hirsutum HOM05D003184 ORTHO05D000394 4.2e-12 75.1 114 40.4
Gorai.006G000900 Gossypium raimondii HOM05D003184 ORTHO05D000394 4.2e-12 75.1 107 41.1
QL10p001098 Quercus lobata HOM05D003184 ORTHO05D000394 4.2e-12 75.1 105 38.1
FAN08G1332 Fragaria x ananassa HOM05D003184 ORTHO05D000394 7.1e-12 74.3 106 40.6
MD14G1150200 Malus domestica HOM05D003184 ORTHO05D000394 7.1e-12 74.3 110 37.3
Cfa003173 Carpinus fangiana HOM05D003184 ORTHO05D000394 9.3e-12 73.9 104 38.5
FvH4_5g09090 Fragaria vesca HOM05D003184 ORTHO05D000394 9.3e-12 73.9 106 41.5
FAN18G2274 Fragaria x ananassa HOM05D003184 ORTHO05D000394 9.3e-12 73.9 106 41.5
Gohir.D09G000800 Gossypium hirsutum HOM05D003184 ORTHO05D000394 1.2e-11 73.6 95 42.1
PGSC0003DMG400012025 Solanum tuberosum HOM05D003184 ORTHO05D000394 1.2e-11 73.6 104 39.4
Nn4g22197 Nelumbo nucifera HOM05D003184 ORTHO05D000394 2.1e-11 72.8 86 46.5
Potri.015G103600 Populus trichocarpa HOM05D003184 ORTHO05D000394 2.1e-11 72.8 104 39.4
Gorai.001G274100 Gossypium raimondii HOM05D003184 ORTHO05D000394 2.7e-11 72.4 97 42.3
Gorai.006G272700 Gossypium raimondii HOM05D003184 ORTHO05D000394 2.7e-11 72.4 114 40.4
Actinidia23302 Actinidia chinensis HOM05D003184 ORTHO05D000394 4.6e-11 71.6 88 45.5
MD06G1133900 Malus domestica HOM05D003184 ORTHO05D000394 4.6e-11 71.6 110 35.5
Haze_14924 Corylus avellana HOM05D003184 ORTHO05D000394 6.0e-11 71.2 106 34.9
Potri.012G104300 Populus trichocarpa HOM05D003184 ORTHO05D000394 6.0e-11 71.2 106 38.7
Gohir.D07G238300 Gossypium hirsutum HOM05D003184 ORTHO05D000394 7.9e-11 70.9 97 41.2
Gohir.D09G248400 Gossypium hirsutum HOM05D003184 ORTHO05D000394 7.9e-11 70.9 114 40.4
Atru.chr6.2627 Acer truncatum HOM05D003184 ORTHO05D000394 1.0e-10 70.5 91 40.7
Atru.chr6.2662 Acer truncatum HOM05D003184 ORTHO05D000394 1.0e-10 70.5 91 40.7
Dinv25627 Davidia involucrata HOM05D003184 ORTHO05D000394 1.0e-10 70.5 92 40.2
Atru.chr6.2626 Acer truncatum HOM05D003184 ORTHO05D000394 1.3e-10 70.1 94 40.4
Sc10g0010710 Simmondsia chinensis HOM05D003184 ORTHO05D000394 1.3e-10 70.1 87 42.5
Sc10g0010800 Simmondsia chinensis HOM05D003184 ORTHO05D000394 1.3e-10 70.1 87 42.5
Solyc03g097720.4 Solanum lycopersicum HOM05D003184 ORTHO05D000394 1.3e-10 70.1 104 38.5
Dinv33298 Davidia involucrata HOM05D003184 ORTHO05D000394 1.8e-10 69.7 92 38.0
Duzib187G1178 Durio zibethinus HOM05D003184 ORTHO05D000394 1.8e-10 69.7 107 39.3
Hma1.2p1_0421F.1_g150040 Hydrangea macrophylla HOM05D003184 ORTHO05D000394 2.3e-10 69.3 91 34.1
Nitab4.5_0002773g0040 Nicotiana tabacum HOM05D003184 ORTHO05D000394 2.3e-10 69.3 100 41.0
PGR142G2053 Punica granatum HOM05D003184 ORTHO05D000394 2.3e-10 69.3 104 37.5
FAN04G2802 Fragaria x ananassa HOM05D003184 ORTHO05D000394 3.0e-10 68.9 106 41.5
Peaxi162Scf00171g01124 Petunia axillaris HOM05D003184 ORTHO05D000394 3.9e-10 68.6 105 47.6
EL10Ac5g11337 Beta vulgaris HOM05D003184 ORTHO05D000394 5.1e-10 68.2 92 42.4
Rhsim10G0002700 Rhododendron simsii HOM05D003184 ORTHO05D000394 5.1e-10 68.2 93 38.7
Sabra12G0076700 Salix brachista HOM05D003184 ORTHO05D000394 5.1e-10 68.2 112 33.0
Sabra15G0123100 Salix brachista HOM05D003184 ORTHO05D000394 5.1e-10 68.2 104 38.5
SGA_v2.0_scaffold44G16941 Striga asiatica HOM05D003184 ORTHO05D000394 5.1e-10 68.2 91 37.4
Thecc.04G043600 Theobroma cacao HOM05D003184 ORTHO05D000394 6.7e-10 67.8 107 38.3
Duzib068G0614 Durio zibethinus HOM05D003184 ORTHO05D000394 8.7e-10 67.4 113 38.1
Nitab4.5_0001451g0020 Nicotiana tabacum HOM05D003184 ORTHO05D000394 8.7e-10 67.4 104 43.3
Haze_07123 Corylus avellana HOM05D003184 ORTHO05D000394 1.5e-09 66.6 104 36.5
EL10Ac6g13375 Beta vulgaris HOM05D003184 ORTHO05D000394 2.5e-09 65.9 92 32.6
Ciclev10016868m.g Citrus clementina HOM05D003184 ORTHO05D000394 2.5e-09 65.9 91 37.4
Cpa.g.sc70.94 Carica papaya HOM05D003184 ORTHO05D000394 3.3e-09 65.5 107 38.3
Cfa018731 Carpinus fangiana HOM05D003184 ORTHO05D000394 3.3e-09 65.5 104 35.6
Gohir.A07G231100 Gossypium hirsutum HOM05D003184 ORTHO05D000394 3.3e-09 65.5 97 38.1
Manes.06G124500 Manihot esculenta HOM05D003184 ORTHO05D000394 3.3e-09 65.5 105 35.2
Manes.14G046800 Manihot esculenta HOM05D003184 ORTHO05D000394 4.3e-09 65.1 110 33.6
Ciclev10032880m.g Citrus clementina HOM05D003184 ORTHO05D000394 5.6e-09 64.7 91 40.7
CsaV3_1G000220 Cucumis sativus L. HOM05D003184 ORTHO05D000394 7.4e-09 64.3 112 36.6
Eucgr.I01612 Eucalyptus grandis HOM05D003184 ORTHO05D000394 9.6e-09 63.9 94 38.3
MD09G1005700 Malus domestica HOM05D003184 ORTHO05D000394 9.6e-09 63.9 103 35.9
Sabra16G0206400 Salix brachista HOM05D003184 ORTHO05D000394 9.6e-09 63.9 94 37.2
SalBow5G4450 Salvia bowleyana HOM05D003184 ORTHO05D000394 9.6e-09 63.9 92 40.2
Migut.F00025 Erythranthe guttata HOM05D003184 ORTHO05D000394 1.3e-08 63.5 91 37.4
Potri.017G062100 Populus trichocarpa HOM05D003184 ORTHO05D000394 1.3e-08 63.5 113 35.4
ATR0582G013 Amborella trichopoda HOM05D003184 ORTHO05D000394 2.8e-08 62.4 101 40.6
Solyc03g097730.2 Solanum lycopersicum HOM05D003184 ORTHO05D000394 2.8e-08 62.4 110 41.8
Sed0014743 Sechium edule HOM05D003184 ORTHO05D000394 3.7e-08 62.0 89 43.8
Cpa.g.sc4.123 Carica papaya HOM05D003184 ORTHO05D000394 4.8e-08 61.6 75 40.0
CiPaw.04G002500 Carya illinoinensis HOM05D003184 ORTHO05D000394 4.8e-08 61.6 103 35.0
Oeu045571.1 Olea europaea HOM05D003184 ORTHO05D000394 4.8e-08 61.6 102 30.4
Manes.04G090520 Manihot esculenta HOM05D003184 ORTHO05D000394 6.2e-08 61.2 92 33.7
SalBow4G2503 Salvia bowleyana HOM05D003184 ORTHO05D000394 1.1e-07 60.5 92 31.5
PGR083G0980 Punica granatum HOM05D003184 ORTHO05D000394 1.4e-07 60.1 96 38.5
Nn3g16336 Nelumbo nucifera HOM05D003184 ORTHO05D000394 1.8e-07 59.7 86 40.7
Hund04246 Selenicereus undatus HOM05D003184 ORTHO05D000394 1.8e-07 59.7 110 32.7
Potri.001G323700 Populus trichocarpa HOM05D003184 ORTHO05D000394 2.4e-07 59.3 104 36.5
FAN05G1263 Fragaria x ananassa HOM05D003184 ORTHO05D000394 4.0e-07 58.5 100 34.0
Lj1g0015749 Lotus japonicus HOM05D003184 ORTHO05D000394 5.3e-07 58.2 111 31.5
FAN02G3218 Fragaria x ananassa HOM05D003184 ORTHO05D000394 6.9e-07 57.8 100 34.0
FAN02G3850 Fragaria x ananassa HOM05D003184 ORTHO05D000394 6.9e-07 57.8 100 34.0
QL02p070196 Quercus lobata HOM05D003184 ORTHO05D000394 9.0e-07 57.4 102 31.4
unitig_26.g9747 Utricularia gibba HOM05D003184 ORTHO05D000394 9.0e-07 57.4 104 33.7
ATR0582G016 Amborella trichopoda HOM05D000748 ORTHO05D000394 1.2e-06 57.0 94 34.0
CDE01G0830 Ceratophyllum demersum HOM05D003184 ORTHO05D000394 1.2e-06 57.0 106 36.8
Cc07_g01140 Coffea canephora HOM05D003184 ORTHO05D000394 1.2e-06 57.0 98 35.7
Peaxi162Scf00358g01216 Petunia axillaris HOM05D003184 ORTHO05D000394 1.2e-06 57.0 96 36.5
vmacro19157 Vaccinium macrocarpon HOM05D003184 ORTHO05D000394 1.2e-06 57.0 46 63.0
ATR0582G135 Amborella trichopoda HOM05D000748 ORTHO05D000394 2.6e-06 55.8 110 34.5
arahy.Tifrunner.gnm1.ann1.KQH5YQ Arachis hypogaea HOM05D003184 ORTHO05D000394 2.6e-06 55.8 89 31.5
arahy.Tifrunner.gnm1.ann1.N0DIBZ Arachis hypogaea HOM05D003184 ORTHO05D000394 2.6e-06 55.8 89 31.5
MSTRG.24117 Avicennia marina HOM05D003184 ORTHO05D000394 2.6e-06 55.8 91 36.3
MELO3C026176.2 Cucumis melo HOM05D003184 ORTHO05D000394 2.6e-06 55.8 101 39.6
Sc22g0003570 Simmondsia chinensis HOM05D003184 ORTHO05D000394 4.5e-06 55.1 91 35.2


User provided reference genes

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