Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007104 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 5.0e-282 973.8 495 100.0
CSS0039830 Camellia sinensis var. sinensis HOM05D001952 ORTHO05D004913 4.6e-275 950.7 495 98.0
Rhsim05G0144200 Rhododendron simsii HOM05D001952 ORTHO05D004913 9.7e-201 703.7 495 73.7
QL08p050945 Quercus lobata HOM05D001952 ORTHO05D004913 1.4e-178 630.2 494 65.2
Lj6A55T16 Lonicera japonica HOM05D001952 ORTHO05D004913 9.8e-177 624.0 500 64.4
Haze_00291 Corylus avellana HOM05D001952 ORTHO05D004913 1.8e-175 619.8 475 68.0
Hma1.2p1_0132F.1_g060740 Hydrangea macrophylla HOM05D001952 ORTHO05D004913 3.1e-175 619.0 495 65.1
TAR375G0220 Trochodendron aralioides HOM05D001952 ORTHO05D004913 5.4e-175 618.2 496 63.5
Haze_16907 Corylus avellana HOM05D001952 ORTHO05D004913 3.5e-174 615.5 475 67.2
Ciclev10004825m.g Citrus clementina HOM05D001952 ORTHO05D004913 6.1e-171 604.7 494 63.0
Potri.014G074900 Populus trichocarpa HOM05D001952 ORTHO05D004913 1.8e-170 603.2 500 63.6
Dinv32411 Davidia involucrata HOM05D001952 ORTHO05D004913 4.9e-168 595.1 374 77.8
vmacro19640 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 4.9e-168 595.1 490 66.3
Manes.05G041100 Manihot esculenta HOM05D001952 ORTHO05D004913 6.4e-168 594.7 487 63.4
Atru.chr1.534 Acer truncatum HOM05D001952 ORTHO05D004913 8.3e-168 594.3 496 62.1
Oeu024552.2 Olea europaea HOM05D001952 ORTHO05D004913 7.0e-167 591.3 494 61.9
CANSAT56G1737 Cannabis sativa HOM05D001952 ORTHO05D004913 9.2e-167 590.9 487 63.0
Sabra14G0053600 Salix brachista HOM05D001952 ORTHO05D004913 2.7e-166 589.3 500 61.6
MD15G1435200 Malus domestica HOM05D001952 ORTHO05D004913 6.6e-165 584.7 494 58.9
TWI34G0947 Tripterygium wilfordii HOM05D001952 ORTHO05D004913 9.5e-164 580.9 500 61.4
Duzib213G0290 Durio zibethinus HOM05D001952 ORTHO05D004913 2.8e-163 579.3 494 60.9
Cpa.g.sc753.2 Carica papaya HOM05D001952 ORTHO05D004913 4.7e-163 578.6 495 60.6
FAN06G4730 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.1e-162 577.4 495 59.2
FvH4_7g08540 Fragaria vesca HOM05D001952 ORTHO05D004913 8.9e-162 574.3 495 59.0
FAN03G2676 Fragaria x ananassa HOM05D001952 ORTHO05D004913 8.9e-162 574.3 495 58.8
Gorai.002G109800 Gossypium raimondii HOM05D001952 ORTHO05D004913 1.2e-161 573.9 494 61.1
RcHm_v2.0_Chr1g0351801 Rosa chinensis HOM05D001952 ORTHO05D004913 1.5e-161 573.5 496 60.5
Thecc.07G183300 Theobroma cacao HOM05D001952 ORTHO05D004913 4.4e-161 572.0 494 59.9
DCAR_006897 Daucus carota HOM05D001952 ORTHO05D004913 5.8e-161 571.6 495 59.4
FAN10G1564 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.3e-160 570.5 495 58.6
Gohir.D01G084100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 2.9e-160 569.3 494 60.7
FAN10G0713 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.1e-159 567.4 495 58.2
Psat3g112920 Pisum sativum HOM05D001952 ORTHO05D004913 7.0e-159 564.7 477 61.2
Cc02_g37060 Coffea canephora HOM05D001952 ORTHO05D004913 2.3e-157 559.7 493 59.0
Gohir.A01G099700 Gossypium hirsutum HOM05D001952 ORTHO05D004913 3.9e-157 558.9 494 59.7
VMungo1383G2849 Vigna mungo HOM05D001952 ORTHO05D004913 3.9e-157 558.9 493 59.2
Glyma.18G215400 Glycine max HOM05D001952 ORTHO05D004913 5.0e-157 558.5 492 59.8
CAN.G1014.4 Capsicum annuum HOM05D001952 ORTHO05D004913 8.6e-157 557.8 480 59.8
Nitab4.5_0003477g0020 Nicotiana tabacum HOM05D001952 ORTHO05D004913 8.6e-157 557.8 487 59.3
Lsat_1_v5_gn_7_6921 Lactuca sativa HOM05D001952 ORTHO05D004913 1.5e-156 557.0 499 58.3
Hund16968 Selenicereus undatus HOM05D001952 ORTHO05D004913 1.9e-156 556.6 495 59.0
FAN06G0866 Fragaria x ananassa HOM05D001952 ORTHO05D004913 2.5e-156 556.2 495 57.8
Medtr7g075940 Medicago truncatula HOM05D001952 ORTHO05D004913 5.6e-156 555.1 488 58.8
FAN06G0845 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.2e-155 553.9 495 57.8
Nitab4.5_0000603g0070 Nicotiana tabacum HOM05D001952 ORTHO05D004913 1.6e-155 553.5 487 58.9
Gohir.D01G083600 Gossypium hirsutum HOM05D001952 ORTHO05D004913 4.7e-155 552.0 494 59.5
Sopen02g025360 Solanum pennellii HOM05D001952 ORTHO05D004913 4.7e-155 552.0 496 58.5
PGSC0003DMG400016476 Solanum tuberosum HOM05D001952 ORTHO05D004913 1.1e-154 550.8 487 58.7
Solyc02g080650.3 Solanum lycopersicum HOM05D001952 ORTHO05D004913 2.3e-154 549.7 496 57.9
FvH4_7g12770 Fragaria vesca HOM05D001952 ORTHO05D004913 3.1e-154 549.3 495 57.4
AUR62004280 Chenopodium quinoa HOM05D001952 ORTHO05D004913 5.2e-154 548.5 498 57.8
MELO3C003326.2 Cucumis melo HOM05D001952 ORTHO05D004913 2.0e-153 546.6 497 57.7
Lalb_Chr19g0127181 Lupinus albus HOM05D001952 ORTHO05D004913 2.0e-153 546.6 489 59.3
AUR62033377 Chenopodium quinoa HOM05D001952 ORTHO05D004913 3.4e-153 545.8 498 57.8
Lj5g0018602 Lotus japonicus HOM05D001952 ORTHO05D004913 2.2e-152 543.1 486 58.8
Phvul.005G010100 Phaseolus vulgaris HOM05D001952 ORTHO05D005568 2.2e-152 543.1 486 58.6
COL.COLO4_19760 Corchorus olitorius HOM05D001952 ORTHO05D004913 3.2e-151 539.3 496 57.9
ECA236G1094 Erigeron canadensis HOM05D001952 ORTHO05D004913 4.1e-151 538.9 487 56.7
THA.LOC104801468 Tarenaya hassleriana HOM05D001952 ORTHO05D004913 4.1e-151 538.9 489 57.3
Psat4g209120 Pisum sativum HOM05D001952 ORTHO05D004913 7.1e-151 538.1 474 59.9
ClCG09G012850 Citrullus lanatus HOM05D001952 ORTHO05D004913 1.2e-150 537.3 496 57.7
Peaxi162Scf00231g00244 Petunia axillaris HOM05D001952 ORTHO05D004913 2.7e-150 536.2 471 57.7
Aqoxy2G02797 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 4.6e-150 535.4 484 57.0
Sc02g0002270 Simmondsia chinensis HOM05D001952 ORTHO05D004913 6.0e-150 535.0 498 57.4
Ah.05g175860 Amaranthus hybridus HOM05D001952 ORTHO05D004913 7.8e-150 534.6 498 55.4
arahy.Tifrunner.gnm1.ann1.U9VUHP Arachis hypogaea HOM05D001952 ORTHO05D004913 1.7e-149 533.5 491 56.4
arahy.Tifrunner.gnm1.ann1.Z6RYGL Arachis hypogaea HOM05D001952 ORTHO05D004913 1.7e-149 533.5 491 56.4
PGSC0003DMG402027917 Solanum tuberosum HOM05D001952 ORTHO05D004913 8.6e-149 531.2 477 58.3
Aqoxy5G00703 Aquilegia oxysepala HOM05D001952 ORTHO05D004913 1.1e-148 530.8 483 56.9
EL10Ac1g00960 Beta vulgaris HOM05D001952 ORTHO05D004913 1.1e-148 530.8 499 57.1
HanXRQChr04g0122171 Helianthus annuus HOM05D001952 ORTHO05D004913 1.1e-148 530.8 492 55.1
arahy.Tifrunner.gnm1.ann1.7790ZZ Arachis hypogaea HOM05D001952 ORTHO05D004913 5.6e-148 528.5 492 55.5
AL6G53250 Arabidopsis lyrata HOM05D001952 ORTHO05D004913 7.3e-148 528.1 492 57.1
PGR004G1086 Punica granatum HOM05D001952 ORTHO05D004913 7.3e-148 528.1 492 55.7
RcHm_v2.0_Chr1g0313121 Rosa chinensis HOM05D001952 ORTHO05D004913 2.1e-147 526.6 496 56.9
Sed0000408 Sechium edule HOM05D001952 ORTHO05D004913 6.2e-147 525.0 493 57.0
Eucgr.H05060 Eucalyptus grandis HOM05D001952 ORTHO05D004913 5.8e-145 518.5 493 55.4
Peaxi162Scf00207g01356 Petunia axillaris HOM05D001952 ORTHO05D004913 4.9e-144 515.4 532 52.3
CARHR248310 Cardamine hirsuta HOM05D001952 ORTHO05D004913 6.4e-144 515.0 493 55.2
CiPaw.02G175900 Carya illinoinensis HOM05D001952 ORTHO05D004913 2.4e-143 513.1 422 62.3
TAR624G0159 Trochodendron aralioides HOM05D001952 ORTHO05D004913 9.2e-143 511.1 495 55.4
Phvul.005G009900 Phaseolus vulgaris HOM05D001952 ORTHO05D004913 2.1e-142 510.0 490 56.1
Carub.0005s0957 Capsella rubella HOM05D001952 ORTHO05D004913 2.7e-142 509.6 492 55.5
Migut.D01755 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.3e-141 507.3 495 54.1
AT4G00231 Arabidopsis thaliana HOM05D001952 ORTHO05D004913 3.3e-140 502.7 487 55.4
Migut.L00973 Erythranthe guttata HOM05D001952 ORTHO05D004913 5.6e-140 501.9 498 53.6
Prupe.2G152200 Prunus persica HOM05D001952 ORTHO05D004913 5.6e-140 501.9 374 65.5
PSO478G1189 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-139 500.7 501 54.5
SalBow7G2566 Salvia bowleyana HOM05D001952 ORTHO05D004913 3.6e-139 499.2 480 54.4
BolC9t52959H Brassica oleracea HOM05D001952 ORTHO05D004913 4.7e-139 498.8 488 55.1
BcaB01g02233 Brassica carinata HOM05D001952 ORTHO05D004913 1.4e-138 497.3 491 54.6
Thhalv10025092m.g Eutrema salsugineum HOM05D001952 ORTHO05D004913 5.2e-138 495.4 490 53.3
Migut.L00878 Erythranthe guttata HOM05D001952 ORTHO05D004913 6.9e-138 495.0 486 53.9
SGA_v2.0_scaffold7G04047 Striga asiatica HOM05D001952 ORTHO05D004913 9.0e-138 494.6 500 53.0
Aa31LG4G9800 Aethionema arabicum HOM05D001952 ORTHO05D004913 1.5e-137 493.8 494 53.8
BcaC04g24187 Brassica carinata HOM05D001952 ORTHO05D004913 4.4e-137 492.3 486 54.7
MBI05_g28393_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 4.4e-137 492.3 500 53.2
C09p00240 Brassica napus HOM05D001952 ORTHO05D004913 1.3e-136 490.7 489 54.2
Aa31LG11G5430 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.9e-136 489.6 489 53.6
BraA09t35698Z Brassica rapa HOM05D001952 ORTHO05D004913 1.1e-135 487.6 489 53.8
PSO782G1679 Papaver somniferum HOM05D001952 ORTHO05D004913 7.1e-135 485.0 499 52.9
A09p00620 Brassica napus HOM05D001952 ORTHO05D004913 9.3e-135 484.6 489 53.8
Lj4g0006210 Lotus japonicus HOM05D001952 ORTHO05D004913 4.8e-131 472.2 469 55.0
MBI17_g11655_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 6.9e-130 468.4 492 52.2
Sp6g00320 Schrenkiella parvula HOM05D001952 ORTHO05D004913 1.6e-126 457.2 491 52.1
CsaV3_3G049900 Cucumis sativus L. HOM05D001952 ORTHO05D004913 1.3e-125 454.1 383 59.8
Carub.0006s2681 Capsella rubella HOM05D001952 ORTHO05D004913 1.9e-116 423.7 439 53.1
Gohir.A01G099100 Gossypium hirsutum HOM05D001952 ORTHO05D004913 1.9e-116 423.7 493 49.9
vmacro08923 Vaccinium macrocarpon HOM05D001952 ORTHO05D004913 1.3e-115 421.0 377 60.2
unitig_0.g170 Utricularia gibba HOM05D001952 ORTHO05D004913 2.0e-113 413.7 485 46.4
Hund09554 Selenicereus undatus HOM05D001952 ORTHO05D004913 6.0e-110 402.1 430 52.1
ATR0820G267 Amborella trichopoda HOM05D001952 ORTHO05D004913 3.7e-107 392.9 528 43.6
Aa31LG10G10140 Aethionema arabicum HOM05D001952 ORTHO05D004913 2.2e-104 383.6 416 51.0
TPR.G13243 Trifolium pratense HOM05D001952 ORTHO05D004913 9.3e-103 378.3 292 65.4
TPR.G6584 Trifolium pratense HOM05D001952 ORTHO05D004913 2.7e-102 376.7 293 66.2
TPR.G18232 Trifolium pratense HOM05D001952 ORTHO05D004913 2.8e-99 366.7 292 64.4
Os03g0118900 Oryza sativa ssp. japonica HOM05D001952 ORTHO05D004913 6.9e-98 362.1 468 44.0
MD07G1124700 Malus domestica HOM05D001952 ORTHO05D004913 1.2e-97 361.3 329 55.6
GSVIVG01026499001 Vitis vinifera HOM05D001952 ORTHO05D008796 2.0e-97 360.5 388 54.1
PSO781G0092 Papaver somniferum HOM05D001952 ORTHO05D004913 1.2e-94 351.3 511 42.5
CDE01G0692 Ceratophyllum demersum HOM05D001952 ORTHO05D004913 2.1e-94 350.5 498 39.8
Ca_07850_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.9e-93 346.3 254 68.5
Zm00001eb001350 Zea mays HOM05D001952 ORTHO05D004913 3.9e-93 346.3 480 42.5
FAN01G0405 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.6e-86 323.2 495 40.6
Gorai.002G109400 Gossypium raimondii HOM05D001952 ORTHO05D004913 7.0e-82 308.9 415 43.6
MD02G1196600 Malus domestica HOM05D001952 ORTHO05D004913 2.0e-76 290.8 294 49.7
Lj6A55T17 Lonicera japonica HOM05D001952 ORTHO05D004913 5.5e-71 272.7 255 59.2
SEGI_14537 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 2.1e-70 270.8 421 38.2
Eucgr.I00845 Eucalyptus grandis HOM05D001952 ORTHO05D004913 2.7e-70 270.4 358 41.9
Lj1g0014823 Lotus japonicus HOM05D001952 ORTHO05D004913 4.0e-69 266.5 259 57.9
Eucgr.I00835 Eucalyptus grandis HOM05D001952 ORTHO05D004913 1.2e-68 265.0 378 41.0
PSO541G2051 Papaver somniferum HOM05D001952 ORTHO05D004913 2.6e-68 263.8 321 46.4
Cfa001612 Carpinus fangiana HOM05D001952 ORTHO05D004913 4.8e-67 259.6 185 71.4
PSO781G0068 Papaver somniferum HOM05D001952 ORTHO05D004913 2.7e-65 253.8 490 34.3
PSO541G1892 Papaver somniferum HOM05D001952 ORTHO05D004913 1.3e-64 251.5 485 34.0
TPR.G34261 Trifolium pratense HOM05D001952 ORTHO05D004913 2.8e-62 243.8 163 73.6
Migut.D01751 Erythranthe guttata HOM05D001952 ORTHO05D004913 1.0e-61 241.9 266 51.5
SMO351G0039 Selaginella moellendorffii HOM05D001952 ORTHO05D004913 6.8e-61 239.2 478 33.5
Glyma.09G276502 Glycine max HOM05D001952 ORTHO05D004913 1.4e-58 231.5 233 53.6
PSO782G4203 Papaver somniferum HOM05D001952 ORTHO05D004913 2.0e-57 227.6 186 62.9
Mapoly0062s0112 Marchantia polymorpha HOM05D001952 ORTHO05D004913 5.9e-57 226.1 597 31.7
Pp3c21_1420 Physcomitrium patens HOM05D001952 ORTHO05D004913 7.8e-57 225.7 542 30.3
SEGI_36330 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 1.9e-55 221.1 377 35.3
Potri.008G158901 Populus trichocarpa HOM05D001952 ORTHO05D004913 2.1e-54 217.6 173 64.2
AagrBONN_evm.TU.Sc2ySwM_117.782 Anthoceros agrestis HOM05D001952 ORTHO05D004913 6.8e-53 212.6 474 32.1
TPR.G23686 Trifolium pratense HOM05D001952 ORTHO05D012360 1.2e-49 201.8 452 34.7
TPR.G37851 Trifolium pratense HOM05D001952 ORTHO05D004913 1.6e-49 201.4 369 37.7
PSO781G0254 Papaver somniferum HOM05D001952 ORTHO05D004913 3.5e-49 200.3 424 33.0
SEGI_08371 Sequoiadendron giganteum HOM05D001952 ORTHO05D004913 4.6e-49 199.9 503 28.6
Peaxi162Scf00153g01322 Petunia axillaris HOM05D001952 ORTHO05D004913 7.8e-49 199.1 255 44.3
MBI17_g11657_MAGBIO Magnolia biondii HOM05D001952 ORTHO05D004913 2.1e-46 191.0 280 41.8
TPR.G34267 Trifolium pratense HOM05D001952 ORTHO05D004913 4.4e-44 183.3 402 34.8
HPP92_001565 Vanilla planifolia HOM05D001952 ORTHO05D004913 4.1e-42 176.8 269 39.8
Oeu061480.1 Olea europaea HOM05D001952 ORTHO05D004913 1.8e-37 161.4 480 29.4
CBR_g31682 Chara braunii HOM05D001952 ORTHO05D004913 1.5e-36 158.3 252 36.1
MD07G1124800 Malus domestica HOM05D001952 ORTHO05D004913 2.4e-34 151.0 146 56.8
Ca_07851_v3 Cicer arietinum L. HOM05D001952 ORTHO05D004913 3.2e-34 150.6 121 57.9
FAN03G2381 Fragaria x ananassa HOM05D001952 ORTHO05D004913 3.3e-31 140.6 98 65.3
arahy.Tifrunner.gnm1.ann1.LMZ4B6 Arachis hypogaea HOM05D001952 ORTHO05D004913 4.3e-31 140.2 128 55.5
Nitab4.5_0001040g0030 Nicotiana tabacum HOM05D001952 ORTHO05D004913 4.7e-30 136.7 185 49.2
Sabra14G0053500 Salix brachista HOM05D001952 ORTHO05D004913 1.4e-29 135.2 312 35.3
Sopen04g024480 Solanum pennellii HOM05D001952 ORTHO05D004913 1.3e-27 128.6 93 66.7
PSO782G4156 Papaver somniferum HOM05D001952 ORTHO05D004913 1.7e-27 128.3 134 48.5
PSO326G0001 Papaver somniferum HOM05D001952 ORTHO05D004913 4.9e-27 126.7 133 48.1
TPR.G6606 Trifolium pratense HOM05D001952 ORTHO05D004913 7.1e-26 122.9 141 51.1
Duzib268G0813 Durio zibethinus HOM05D001952 ORTHO05D004913 4.0e-21 107.1 110 49.1
arahy.Tifrunner.gnm1.ann1.6B0T5V Arachis hypogaea HOM05D001952 ORTHO05D004913 7.8e-17 92.8 146 39.0
Cre08.g374300 Chlamydomonas reinhardtii HOM05D001952 ORTHO05D004913 3.9e-16 90.5 103 40.8
MCO07G121 Micromonas commoda HOM05D001952 ORTHO05D004913 4.5e-12 77.0 170 27.1
FAN03G1970 Fragaria x ananassa HOM05D001952 ORTHO05D004913 1.0e-08 65.9 72 45.8


User provided reference genes

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