Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007100 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 2.3e-77 292.4 171 100.0
CSS0000299 Camellia sinensis var. sinensis HOM05D005201 ORTHO05D006139 9.8e-76 287.0 171 97.1
Actinidia03317 Actinidia chinensis HOM05D005201 ORTHO05D006139 1.7e-64 249.6 171 87.7
Actinidia25720 Actinidia chinensis HOM05D005201 ORTHO05D006139 5.0e-64 248.1 165 87.9
TAR375G0792 Trochodendron aralioides HOM05D005201 ORTHO05D006139 3.9e-56 221.9 176 76.1
COL.COLO4_16707 Corchorus olitorius HOM05D005201 ORTHO05D006139 5.1e-56 221.5 171 76.0
Potri.001G129800 Populus trichocarpa HOM05D005201 ORTHO05D006139 6.6e-56 221.1 177 77.4
Duzib205G0777 Durio zibethinus HOM05D005201 ORTHO05D006139 7.3e-55 217.6 171 76.6
CANSAT21G0726 Cannabis sativa HOM05D005201 ORTHO05D006139 1.2e-54 216.9 170 77.1
MSTRG.25759 Avicennia marina HOM05D005201 ORTHO05D006139 6.2e-54 214.5 161 74.5
TWI60G0094 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.2e-54 214.5 172 77.3
MD06G1017600 Malus domestica HOM05D005201 ORTHO05D006139 8.1e-54 214.2 168 76.2
CAN.G947.20 Capsicum annuum HOM05D005201 ORTHO05D006139 1.1e-53 213.8 170 74.7
Atru.chr6.2111 Acer truncatum HOM05D005201 ORTHO05D006139 3.1e-53 212.2 170 76.5
Aqoxy3G02454 Aquilegia oxysepala HOM05D005201 ORTHO05D006139 4.0e-53 211.8 170 75.3
Nitab4.5_0001327g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.8e-53 211.1 166 76.5
Oeu057144.1 Olea europaea HOM05D005201 ORTHO05D006139 1.5e-52 209.9 166 75.9
MD00G1078600 Malus domestica HOM05D005201 ORTHO05D006139 2.0e-52 209.5 168 74.4
SalBow4G2195 Salvia bowleyana HOM05D005201 ORTHO05D006139 4.4e-52 208.4 161 74.5
CAN.G1741.1 Capsicum annuum HOM05D005201 ORTHO05D006139 7.6e-52 207.6 169 74.6
Nitab4.5_0009069g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 4.9e-51 204.9 169 73.4
Nitab4.5_0008438g0010 Nicotiana tabacum HOM05D005201 ORTHO05D006139 6.4e-51 204.5 169 73.4
Solyc08g005910.3 Solanum lycopersicum HOM05D005201 ORTHO05D006139 1.1e-50 203.8 169 73.4
Sopen08g001880 Solanum pennellii HOM05D005201 ORTHO05D006139 1.1e-50 203.8 169 73.4
MELO3C016255.2 Cucumis melo HOM05D005201 ORTHO05D006139 4.1e-50 201.8 177 58.8
PGSC0003DMG400004473 Solanum tuberosum HOM05D005201 ORTHO05D006139 5.4e-50 201.4 169 72.8
Peaxi162Scf00045g01329 Petunia axillaris HOM05D005201 ORTHO05D006139 7.8e-49 197.6 172 70.3
GSVIVG01036941001 Vitis vinifera HOM05D005201 ORTHO05D006139 7.8e-49 197.6 160 78.1
ATR0829G041 Amborella trichopoda HOM05D005201 ORTHO05D006139 1.0e-48 197.2 172 70.3
Sed0016355 Sechium edule HOM05D005201 ORTHO05D006139 1.3e-48 196.8 149 79.9
Oeu002017.1 Olea europaea HOM05D005201 ORTHO05D006139 5.1e-48 194.9 171 72.5
Sabra01G0100200 Salix brachista HOM05D005201 ORTHO05D006139 6.6e-48 194.5 240 46.7
Lalb_Chr16g0380611 Lupinus albus HOM05D005201 ORTHO05D006139 8.6e-48 194.1 158 74.7
SGA_v2.0_scaffold269G46298 Striga asiatica HOM05D005201 ORTHO05D006139 3.3e-47 192.2 161 60.9
Lsat_1_v5_gn_6_15560 Lactuca sativa HOM05D005201 ORTHO05D006139 8.1e-46 187.6 146 76.7
Cc00_g08490 Coffea canephora HOM05D005201 ORTHO05D006139 1.4e-45 186.8 168 72.0
FvH4_5g24200 Fragaria vesca HOM05D005201 ORTHO05D006139 2.4e-45 186.0 174 55.2
FAN13G2355 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.4e-45 186.0 174 55.2
FAN18G1178 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.4e-45 186.0 174 55.2
FAN14G2110 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.0e-45 185.3 170 58.2
Sopen12g032120 Solanum pennellii HOM05D005201 ORTHO05D006139 6.8e-45 184.5 165 68.5
FvH4_6g43270 Fragaria vesca HOM05D005201 ORTHO05D006139 8.9e-45 184.1 170 57.6
FAN04G1315 Fragaria x ananassa HOM05D005201 ORTHO05D006139 8.9e-45 184.1 174 55.2
FAN10G0178 Fragaria x ananassa HOM05D002235 ORTHO05D006139 1.2e-44 183.7 163 57.7
Glyma.01G150400 Glycine max HOM05D005201 ORTHO05D006139 1.5e-44 183.3 159 72.3
Rhsim01G0132000 Rhododendron simsii HOM05D005201 ORTHO05D006139 2.0e-44 183.0 166 55.4
Hma1.2p1_0268F.1_g107720 Hydrangea macrophylla HOM05D005201 ORTHO05D006139 2.6e-44 182.6 169 66.9
RcHm_v2.0_Chr2g0159541 Rosa chinensis HOM05D005201 ORTHO05D006139 4.4e-44 181.8 162 59.3
Thecc.03G324300 Theobroma cacao HOM05D005201 ORTHO05D006139 4.4e-44 181.8 170 65.3
RcHm_v2.0_Chr7g0214011 Rosa chinensis HOM05D005201 ORTHO05D006139 5.8e-44 181.4 174 66.1
FAN05G2652 Fragaria x ananassa HOM05D005201 ORTHO05D006139 2.2e-43 179.5 164 57.9
CDE01G0225 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 4.9e-43 178.3 159 56.0
Migut.A00504 Erythranthe guttata HOM05D005201 ORTHO05D006139 4.9e-43 178.3 158 67.7
Prupe.5G018400 Prunus persica HOM05D005201 ORTHO05D006139 4.9e-43 178.3 168 56.0
THA.LOC104801352 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 4.9e-43 178.3 164 69.5
THA.LOC104818333 Tarenaya hassleriana HOM05D005201 ORTHO05D006139 1.1e-42 177.2 149 74.5
MSTRG.11837 Avicennia marina HOM05D005201 ORTHO05D006139 1.9e-42 176.4 168 69.0
Sabra03G0071400 Salix brachista HOM05D005201 ORTHO05D006139 1.9e-42 176.4 177 66.1
Potri.003G104400 Populus trichocarpa HOM05D005201 ORTHO05D006139 3.2e-42 175.6 177 64.4
FAN08G2124 Fragaria x ananassa HOM05D005201 ORTHO05D006139 4.2e-42 175.3 174 52.9
CiPaw.11G104600 Carya illinoinensis HOM05D005201 ORTHO05D006139 5.4e-42 174.9 174 67.2
BcaC04g23459 Brassica carinata HOM05D005201 ORTHO05D006139 7.1e-42 174.5 175 66.9
DCAR_030956 Daucus carota HOM05D005201 ORTHO05D006139 7.1e-42 174.5 167 66.5
QL12p002095 Quercus lobata HOM05D005201 ORTHO05D006139 9.3e-42 174.1 178 68.0
A09p07260 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-41 173.7 167 67.7
C09p08120 Brassica napus HOM05D005201 ORTHO05D006139 1.2e-41 173.7 167 67.7
BolC9t53725H Brassica oleracea HOM05D003751 ORTHO05D006139 1.2e-41 173.7 167 67.7
BraA09t36375Z Brassica rapa HOM05D001456 ORTHO05D002799 1.2e-41 173.7 164 68.9
PGR031G3990 Punica granatum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 177 67.2
PGR067G0002 Punica granatum HOM05D005201 ORTHO05D006139 1.6e-41 173.3 177 67.2
Dinv09437 Davidia involucrata HOM05D005201 ORTHO05D006139 2.1e-41 172.9 167 68.3
Cpa.g.sc137.21 Carica papaya HOM05D005201 ORTHO05D006139 3.5e-41 172.2 167 66.5
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 4.6e-41 171.8 154 64.9
Ah.12g056090 Amaranthus hybridus HOM05D005201 ORTHO05D006139 1.3e-40 170.2 183 53.6
Gohir.A08G146800 Gossypium hirsutum HOM05D005201 ORTHO05D006139 1.3e-40 170.2 172 63.4
Sc07g0008280 Simmondsia chinensis HOM05D005201 ORTHO05D006139 1.3e-40 170.2 174 66.1
Eucgr.D02584 Eucalyptus grandis HOM05D005201 ORTHO05D006139 1.7e-40 169.9 175 51.4
Gohir.D08G167900 Gossypium hirsutum HOM05D005201 ORTHO05D006139 2.3e-40 169.5 172 63.4
Gorai.004G175100 Gossypium raimondii HOM05D005201 ORTHO05D006139 2.3e-40 169.5 172 63.4
Hund14321 Selenicereus undatus HOM05D005201 ORTHO05D006139 3.9e-40 168.7 174 62.1
DCAR_000700 Daucus carota HOM05D005201 ORTHO05D006139 5.1e-40 168.3 172 55.2
TWI32G1103 Tripterygium wilfordii HOM05D005201 ORTHO05D006139 6.6e-40 167.9 172 65.1
Carub.0008s2190 Capsella rubella HOM05D005201 ORTHO05D006139 8.7e-40 167.5 150 70.0
CiPaw.12G072500 Carya illinoinensis HOM05D005201 ORTHO05D006139 8.7e-40 167.5 174 52.9
AUR62007435 Chenopodium quinoa HOM05D005201 ORTHO05D006139 1.1e-39 167.2 173 62.4
AUR62022383 Chenopodium quinoa HOM05D005201 ORTHO05D006139 2.5e-39 166.0 173 64.2
HanXRQChr08g0226681 Helianthus annuus HOM05D005201 ORTHO05D006139 2.5e-39 166.0 165 64.8
AUR62027303 Chenopodium quinoa HOM05D005201 ORTHO05D006139 3.3e-39 165.6 173 62.4
Ah.02g117370 Amaranthus hybridus HOM05D005201 ORTHO05D006139 4.3e-39 165.2 174 63.8
AL8G37890 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 4.3e-39 165.2 164 67.1
PGSC0003DMG400029376 Solanum tuberosum HOM05D005201 ORTHO05D006139 5.6e-39 164.9 144 69.4
Thhalv10005013m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 7.3e-39 164.5 165 66.7
AT5G61230 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 1.3e-38 163.7 150 68.0
ECA240G4218 Erigeron canadensis HOM05D005201 ORTHO05D006139 1.3e-38 163.7 175 62.9
Lsat_1_v5_gn_5_60900 Lactuca sativa HOM05D005201 ORTHO05D006139 1.6e-38 163.3 169 60.4
arahy.Tifrunner.gnm1.ann1.02E8LK Arachis hypogaea HOM05D005201 ORTHO05D006139 2.8e-38 162.5 166 67.5
arahy.Tifrunner.gnm1.ann1.2T22I7 Arachis hypogaea HOM05D005201 ORTHO05D006139 2.8e-38 162.5 166 67.5
ClCG07G011320 Citrullus lanatus HOM05D005201 ORTHO05D006139 2.8e-38 162.5 174 64.4
Ciclev10002646m.g Citrus clementina HOM05D005201 ORTHO05D006139 3.6e-38 162.2 172 65.7
CsaV3_4G006880 Cucumis sativus L. HOM05D005201 ORTHO05D006139 6.2e-38 161.4 174 63.2
Psat2g143240 Pisum sativum HOM05D005201 ORTHO05D006139 6.2e-38 161.4 158 65.2
Ca_25081_v3 Cicer arietinum L. HOM05D005201 ORTHO05D006139 1.1e-37 160.6 173 49.1
EL10Ac5g11893 Beta vulgaris HOM05D005201 ORTHO05D006139 1.8e-37 159.8 173 62.4
Medtr5g026550 Medicago truncatula HOM05D005201 ORTHO05D006139 1.8e-37 159.8 173 48.6
Lalb_Chr09g0325181 Lupinus albus HOM05D005201 ORTHO05D006139 3.1e-37 159.1 166 65.7
Phvul.002G126500 Phaseolus vulgaris HOM05D005201 ORTHO05D006139 5.3e-37 158.3 170 62.9
SMO356G0124 Selaginella moellendorffii HOM05D005201 ORTHO05D006139 5.3e-37 158.3 127 76.4
HanXRQChr07g0205241 Helianthus annuus HOM05D005201 ORTHO05D006139 6.9e-37 157.9 174 50.0
Pp3c6_1190 Physcomitrium patens HOM05D005201 ORTHO05D006139 2.6e-36 156.0 160 63.1
TPR.G39676 Trifolium pratense HOM05D005201 ORTHO05D006139 2.6e-36 156.0 158 64.6
Glyma.09G215400 Glycine max HOM05D005201 ORTHO05D006139 3.4e-36 155.6 159 65.4
Nitab4.5_0001159g0040 Nicotiana tabacum HOM05D005201 ORTHO05D006139 9.9e-36 154.1 166 66.9
Sed0020489 Sechium edule HOM05D005201 ORTHO05D006139 9.9e-36 154.1 151 70.9
VMungo1215G2692 Vigna mungo HOM05D005201 ORTHO05D006139 1.7e-35 153.3 159 64.8
Manes.04G035300 Manihot esculenta HOM05D005201 ORTHO05D006139 2.9e-35 152.5 158 64.6
PSO384G4870 Papaver somniferum HOM05D005201 ORTHO05D006139 2.9e-35 152.5 160 62.5
PSO339G2945 Papaver somniferum HOM05D005201 ORTHO05D006139 3.8e-35 152.1 159 59.1
unitig_0.g2827 Utricularia gibba HOM05D005201 ORTHO05D006139 6.4e-35 151.4 161 67.1
CDE12G0445 Ceratophyllum demersum HOM05D005201 ORTHO05D006139 1.9e-34 149.8 174 48.3
Lj2g0015792 Lotus japonicus HOM05D005201 ORTHO05D006139 7.1e-34 147.9 158 61.4
Eucgr.B00905 Eucalyptus grandis HOM05D005201 ORTHO05D006139 2.1e-33 146.4 83 78.3
Os02g0102600 Oryza sativa ssp. japonica HOM05D005201 ORTHO05D006139 2.1e-33 146.4 151 50.3
PSO782G0015 Papaver somniferum HOM05D005201 ORTHO05D006139 7.8e-33 144.4 154 63.0
PSO063G1500 Papaver somniferum HOM05D005201 ORTHO05D006139 1.0e-32 144.1 154 63.0
Thhalv10014823m.g Eutrema salsugineum HOM05D005201 ORTHO05D006139 3.3e-31 139.0 160 63.1
AT5G07840 Arabidopsis thaliana HOM05D005201 ORTHO05D006139 2.8e-30 136.0 159 61.6
vmacro21163 Vaccinium macrocarpon HOM05D005201 ORTHO05D006139 3.1e-29 132.5 129 54.3
BraA03t13806Z Brassica rapa HOM05D005201 ORTHO05D006139 1.2e-28 130.6 166 59.0
AagrBONN_evm.TU.Sc2ySwM_344.4086 Anthoceros agrestis HOM05D005201 ORTHO05D006139 3.4e-28 129.0 107 55.1
Aa31LG11G2130 Aethionema arabicum HOM05D005201 ORTHO05D006139 4.5e-28 128.6 159 59.7
BcaC06g33218 Brassica carinata HOM05D005201 ORTHO05D006139 4.5e-28 128.6 166 58.4
BolC7t45014H Brassica oleracea HOM05D005201 ORTHO05D006139 4.5e-28 128.6 166 58.4
AL6G18180 Arabidopsis lyrata HOM05D005201 ORTHO05D006139 5.8e-28 128.3 160 60.6
A03p46860 Brassica napus HOM05D005201 ORTHO05D006139 5.8e-28 128.3 166 57.8
SEGI_37761 Sequoiadendron giganteum HOM05D005201 ORTHO05D006139 7.6e-28 127.9 168 57.1
CARHR274980 Cardamine hirsuta HOM05D005201 ORTHO05D006139 9.9e-28 127.5 164 58.5
Sp2g24460 Schrenkiella parvula HOM05D005201 ORTHO05D006139 1.7e-27 126.7 164 58.5
Solyc12g096260.2 Solanum lycopersicum HOM05D005201 ORTHO05D006139 2.9e-27 125.9 125 69.6
FAN02G0543 Fragaria x ananassa HOM05D002235 ORTHO05D006252 8.4e-27 124.4 80 67.5
C07p44910 Brassica napus HOM05D005201 ORTHO05D006139 4.2e-26 122.1 167 56.3
Mapoly0093s0041 Marchantia polymorpha HOM05D005201 ORTHO05D006139 3.5e-25 119.0 140 60.0
Dinv37463 Davidia involucrata HOM05D005201 ORTHO05D006139 1.0e-24 117.5 99 86.9
Lj8A408T7 Lonicera japonica HOM05D005201 ORTHO05D006139 5.6e-23 111.7 129 48.1
Lsat_1_v5_gn_8_13820 Lactuca sativa HOM05D005201 ORTHO05D006139 3.7e-22 109.0 62 69.4
Haze_08003 Corylus avellana HOM05D005201 ORTHO05D006139 4.5e-20 102.1 135 44.4
CANSAT11G0816 Cannabis sativa HOM05D005201 ORTHO05D006139 9.3e-18 94.4 152 38.2
Zm00001eb229310 Zea mays HOM05D005201 ORTHO05D006139 9.3e-18 94.4 121 43.0
SGA_v2.0_scaffold2264G54095 Striga asiatica HOM05D005201 ORTHO05D006139 2.1e-17 93.2 111 41.4
Nn3g19216 Nelumbo nucifera HOM05D005201 ORTHO05D006139 3.5e-17 92.4 101 74.3
Peaxi162Scf00876g00121 Petunia axillaris HOM05D005201 ORTHO05D006139 4.6e-17 92.0 65 63.1


User provided reference genes

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