Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 1.2e-269 932.6 466 100.0
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 4.8e-266 920.6 466 98.7
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.7e-215 752.7 462 80.7
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.0e-212 743.4 468 80.8
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 3.8e-207 724.9 466 79.6
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 1.6e-200 703.0 461 75.5
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 2.9e-199 698.7 500 73.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 8.9e-188 660.6 461 70.9
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 7.0e-185 651.0 460 69.1
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 7.0e-185 651.0 461 69.6
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 1.3e-183 646.7 459 68.4
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 3.3e-182 642.1 461 68.8
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 2.1e-181 639.4 462 68.2
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 8.9e-180 634.0 461 69.0
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.6e-179 632.5 465 66.9
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 5.8e-179 631.3 465 65.8
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 1.7e-178 629.8 462 67.1
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.1e-177 627.1 463 66.7
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 4.1e-177 625.2 513 62.4
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 6.0e-176 621.3 461 66.4
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 1.1e-174 617.1 460 65.2
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 2.5e-174 615.9 461 65.9
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 7.3e-174 614.4 461 65.7
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.6e-173 613.2 461 65.9
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 1.6e-173 613.2 461 65.7
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 5.2e-172 608.2 469 63.3
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 2.9e-170 602.4 462 63.9
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 4.9e-170 601.7 453 64.7
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.1e-169 600.5 461 64.0
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 1.4e-169 600.1 461 64.6
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 1.9e-169 599.7 461 64.9
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 3.2e-169 599.0 461 66.4
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 7.1e-169 597.8 463 63.5
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 7.1e-169 597.8 463 64.4
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 7.1e-169 597.8 463 64.4
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.2e-168 597.0 461 63.6
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 2.1e-168 596.3 461 62.5
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 2.7e-168 595.9 463 64.1
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 2.7e-168 595.9 446 65.5
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 7.8e-168 594.3 445 65.8
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 1.0e-167 594.0 461 66.2
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 1.3e-167 593.6 464 61.9
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 3.3e-166 589.0 456 64.3
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 9.6e-166 587.4 461 61.4
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 1.6e-165 586.6 461 61.6
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 1.8e-164 583.2 461 62.7
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 1.5e-163 580.1 461 62.0
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 4.4e-163 578.6 454 62.3
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 4.4e-163 578.6 463 63.1
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 7.6e-163 577.8 470 61.7
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 7.6e-163 577.8 463 63.1
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 1.3e-162 577.0 434 65.9
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 1.7e-162 576.6 470 62.6
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 1.7e-162 576.6 457 59.1
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 2.1e-160 569.7 458 61.8
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 1.0e-159 567.4 462 60.4
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 3.3e-158 562.4 458 60.5
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 5.6e-158 561.6 466 60.7
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 6.9e-156 554.7 459 60.8
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 2.6e-155 552.7 454 61.7
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.4e-155 552.0 459 61.0
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 9.9e-155 550.8 453 59.6
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 1.3e-154 550.4 464 60.3
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.7e-154 550.1 453 59.6
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.1e-153 547.4 459 60.3
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 1.4e-153 547.0 463 60.9
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 1.4e-153 547.0 464 59.9
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 7.1e-153 544.7 460 58.0
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 9.3e-153 544.3 467 56.7
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.2e-152 543.9 463 60.9
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 1.3e-151 540.4 456 57.2
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 1.7e-151 540.0 465 57.0
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 1.5e-150 537.0 463 56.2
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 1.9e-150 536.6 465 56.6
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 2.5e-150 536.2 454 56.8
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.3e-150 535.8 468 56.6
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 4.8e-149 531.9 459 56.4
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 8.1e-149 531.2 468 56.2
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 1.1e-148 530.8 456 57.0
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 1.1e-148 530.8 472 56.1
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 6.9e-148 528.1 454 57.3
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 9.0e-148 527.7 454 56.6
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 2.0e-147 526.6 458 56.3
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.3e-146 523.9 462 58.4
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 2.9e-146 522.7 454 56.2
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 4.9e-146 521.9 465 57.0
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 6.4e-146 521.5 462 58.9
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 1.4e-145 520.4 469 55.9
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.2e-144 517.3 465 57.4
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 7.9e-144 514.6 497 53.5
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 1.0e-143 514.2 465 56.8
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.3e-143 513.8 423 60.3
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.0e-143 512.7 438 59.1
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 5.1e-143 511.9 460 57.4
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 9.3e-137 491.1 456 55.7
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 2.2e-130 469.9 457 52.7
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.9e-130 469.5 490 50.0
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 1.2e-128 464.2 421 54.6
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 4.6e-128 462.2 459 52.1
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.8e-127 460.3 458 50.9
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 1.5e-126 457.2 422 57.1
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 2.5e-126 456.4 468 48.5
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 8.5e-122 441.4 449 49.9
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.1e-121 441.0 454 50.7
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 8.8e-111 404.8 295 64.7
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 5.7e-102 375.6 530 42.5
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 2.2e-101 373.6 424 44.3
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 7.0e-92 342.0 369 47.7
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.0e-92 342.0 369 47.7
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 5.5e-89 332.4 277 60.6
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 2.0e-86 323.9 445 40.4
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 1.3e-85 321.2 488 37.9
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 7.3e-81 305.4 466 39.9
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 6.4e-77 292.4 329 51.4
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 8.3e-69 265.4 367 45.8
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 9.5e-65 251.9 510 32.4
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 8.9e-63 245.4 498 30.7
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 3.6e-48 196.8 390 32.3
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 4.7e-48 196.4 192 54.2
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 1.6e-43 181.4 162 54.9
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 6.0e-43 179.5 162 54.3
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 1.3e-37 161.8 117 65.8
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.7e-34 151.4 105 64.8
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-33 148.3 124 54.0
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.5e-33 148.3 124 54.0
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 1.5e-33 148.3 217 40.1
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.6e-32 144.8 230 37.4
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.1e-32 144.4 121 53.7
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 2.4e-31 141.0 124 56.5
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 1.2e-30 138.7 422 25.8
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 6.4e-29 132.9 451 23.7
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 8.7e-26 122.5 275 29.8
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 9.3e-20 102.4 121 42.1
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 6.3e-16 89.7 71 62.0
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.4e-15 88.6 170 34.7
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 6.9e-15 86.3 88 50.0
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 1.2e-14 85.5 88 50.0
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 4.2e-12 77.0 69 58.0
Cc06_g10970 Coffea canephora HOM05D005294 ORTHO05D038989 1.8e-10 71.6 40 82.5
GSVIVG01038419001 Vitis vinifera HOM05D005294 ORTHO05D008307 6.7e-10 69.7 38 81.6
GSVIVG01027373001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.5e-09 67.8 39 76.9


User provided reference genes

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