Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007057 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 3.0e-142 508.4 246 100.0
CSS0009297 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 3.9e-110 401.7 234 85.5
CSS0011520 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 1.4e-70 270.4 163 87.1
CSS0036835 Camellia sinensis var. sinensis HOM05D005342 ORTHO05D006925 1.4e-70 270.4 163 87.1
Dinv36886 Davidia involucrata HOM05D005342 ORTHO05D006925 1.2e-63 247.3 163 79.1
ECA246G2798 Erigeron canadensis HOM05D005342 ORTHO05D006925 1.6e-63 246.9 159 79.2
Dinv11757 Davidia involucrata HOM05D005342 ORTHO05D006925 1.8e-62 243.4 162 79.0
HanXRQChr05g0148741 Helianthus annuus HOM05D005342 ORTHO05D006925 1.8e-62 243.4 159 77.4
Lj2A343T76 Lonicera japonica HOM05D005342 ORTHO05D006925 1.5e-61 240.4 159 79.2
CANSAT35G0196 Cannabis sativa HOM05D005342 ORTHO05D006925 2.0e-61 240.0 163 77.3
Potri.001G160800 Populus trichocarpa HOM05D005342 ORTHO05D006925 7.5e-61 238.0 159 78.0
Sabra01G0131500 Salix brachista HOM05D005342 ORTHO05D006925 9.8e-61 237.7 159 77.4
Thecc.02G004100 Theobroma cacao HOM05D005342 ORTHO05D006925 1.3e-60 237.3 163 77.3
Manes.03G075200 Manihot esculenta HOM05D005342 ORTHO05D006925 2.9e-60 236.1 159 75.5
GSVIVG01012146001 Vitis vinifera HOM05D005342 ORTHO05D006925 4.9e-60 235.3 163 76.1
Carub.0001s2937 Capsella rubella HOM05D005342 ORTHO05D006925 6.4e-60 235.0 165 73.3
Lsat_1_v5_gn_6_95820 Lactuca sativa HOM05D005342 ORTHO05D006925 8.3e-60 234.6 169 72.2
Aa31LG9G16230 Aethionema arabicum HOM05D005342 ORTHO05D006925 1.4e-59 233.8 159 74.8
Gorai.002G218700 Gossypium raimondii HOM05D005342 ORTHO05D006925 1.4e-59 233.8 163 75.5
QL11p012260 Quercus lobata HOM05D005342 ORTHO05D006925 1.4e-59 233.8 160 76.9
Rhsim03G0048000 Rhododendron simsii HOM05D005342 ORTHO05D006925 1.4e-59 233.8 175 73.7
Hund19384 Selenicereus undatus HOM05D005342 ORTHO05D006925 1.4e-59 233.8 159 76.1
CiPaw.09G137700 Carya illinoinensis HOM05D005342 ORTHO05D006925 3.2e-59 232.6 163 76.1
Nn2g13664 Nelumbo nucifera HOM05D005342 ORTHO05D006925 4.1e-59 232.3 161 73.3
Gohir.A01G185820 Gossypium hirsutum HOM05D005342 ORTHO05D006925 5.4e-59 231.9 163 74.2
Gohir.D01G176400 Gossypium hirsutum HOM05D005342 ORTHO05D006925 5.4e-59 231.9 163 74.8
TWI53G1312 Tripterygium wilfordii HOM05D005342 ORTHO05D006925 5.4e-59 231.9 159 74.2
AL1G45370 Arabidopsis lyrata HOM05D005342 ORTHO05D006925 7.0e-59 231.5 165 72.7
CARHR030500 Cardamine hirsuta HOM05D005342 ORTHO05D006925 7.0e-59 231.5 165 72.7
AT1G30960 Arabidopsis thaliana HOM05D005342 ORTHO05D006925 9.2e-59 231.1 165 72.7
DCAR_001275 Daucus carota HOM05D005342 ORTHO05D006925 1.2e-58 230.7 165 73.9
arahy.Tifrunner.gnm1.ann1.EGN9M7 Arachis hypogaea HOM05D005342 ORTHO05D006925 1.6e-58 230.3 163 72.4
vmacro21284 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 1.6e-58 230.3 175 72.0
BcaB07g32756 Brassica carinata HOM05D005342 ORTHO05D006925 2.0e-58 229.9 163 71.2
BolC5t31751H Brassica oleracea HOM05D005342 ORTHO05D006925 2.0e-58 229.9 163 71.2
A09p35250 Brassica napus HOM05D005342 ORTHO05D006925 2.7e-58 229.6 163 71.2
BraA09t39052Z Brassica rapa HOM05D005342 ORTHO05D006925 2.7e-58 229.6 163 71.2
Sp1g26820 Schrenkiella parvula HOM05D005342 ORTHO05D006925 2.7e-58 229.6 163 71.2
A07p09560 Brassica napus HOM05D005342 ORTHO05D006925 3.5e-58 229.2 163 71.2
BraA07t28750Z Brassica rapa HOM05D005342 ORTHO05D006925 3.5e-58 229.2 163 71.2
Lj2g0003117 Lotus japonicus HOM05D005342 ORTHO05D006925 3.5e-58 229.2 163 73.6
Lalb_Chr10g0095551 Lupinus albus HOM05D005342 ORTHO05D006925 5.9e-58 228.4 159 74.2
THA.LOC104814325 Tarenaya hassleriana HOM05D005342 ORTHO05D006925 5.9e-58 228.4 159 74.2
TAR626G0514 Trochodendron aralioides HOM05D005342 ORTHO05D006925 5.9e-58 228.4 159 73.0
C07p14720 Brassica napus HOM05D005342 ORTHO05D006925 7.8e-58 228.0 163 70.6
BolC7t41974H Brassica oleracea HOM05D005342 ORTHO05D006925 7.8e-58 228.0 163 70.6
Thhalv10007654m.g Eutrema salsugineum HOM05D005342 ORTHO05D006925 7.8e-58 228.0 159 72.3
CsaV3_6G052760 Cucumis sativus L. HOM05D005342 ORTHO05D006925 1.0e-57 227.6 159 74.2
Migut.M02010 Erythranthe guttata HOM05D005342 ORTHO05D006925 1.0e-57 227.6 159 74.2
Glyma.07G173800 Glycine max HOM05D005342 ORTHO05D006925 1.0e-57 227.6 163 72.4
BcaC05g27129 Brassica carinata HOM05D005342 ORTHO05D006925 1.3e-57 227.3 163 70.6
C05p30140 Brassica napus HOM05D005342 ORTHO05D006925 1.3e-57 227.3 163 70.6
Cpa.g.sc1627.2 Carica papaya HOM05D005342 ORTHO05D006925 1.3e-57 227.3 159 73.0
Ca_26328_v3 Cicer arietinum L. HOM05D005342 ORTHO05D006925 1.3e-57 227.3 163 71.8
MELO3C007034.2 Cucumis melo HOM05D005342 ORTHO05D006925 1.3e-57 227.3 159 73.6
Ciclev10015344m.g Citrus clementina HOM05D005342 ORTHO05D006925 1.7e-57 226.9 159 74.2
Psat6g050320 Pisum sativum HOM05D005342 ORTHO05D006925 2.3e-57 226.5 163 71.2
Sed0018199 Sechium edule HOM05D005342 ORTHO05D006925 3.0e-57 226.1 163 71.8
AUR62020653 Chenopodium quinoa HOM05D005342 ORTHO05D006925 6.6e-57 224.9 159 74.2
Peaxi162Scf00520g00219 Petunia axillaris HOM05D005342 ORTHO05D006925 8.6e-57 224.6 163 71.2
EL10Ac2g03680 Beta vulgaris HOM05D005342 ORTHO05D006925 1.5e-56 223.8 163 73.0
Haze_05265 Corylus avellana HOM05D005342 ORTHO05D006925 1.5e-56 223.8 159 74.8
Prupe.4G117500 Prunus persica HOM05D005342 ORTHO05D006925 1.9e-56 223.4 159 73.6
PSO017G0115 Papaver somniferum HOM05D005342 ORTHO05D006925 2.5e-56 223.0 159 71.1
PSO063G2198 Papaver somniferum HOM05D005342 ORTHO05D006925 2.5e-56 223.0 159 71.1
Phvul.003G015000 Phaseolus vulgaris HOM05D005342 ORTHO05D006925 3.3e-56 222.6 163 69.3
HPP92_001898 Vanilla planifolia HOM05D005342 ORTHO05D006925 3.3e-56 222.6 163 70.6
MSTRG.16371 Avicennia marina HOM05D005342 ORTHO05D006925 4.3e-56 222.2 159 71.7
TPR.G34568 Trifolium pratense HOM05D005342 ORTHO05D006925 7.3e-56 221.5 163 69.9
Atru.chr10.349 Acer truncatum HOM05D005342 ORTHO05D006925 9.5e-56 221.1 163 69.9
AUR62038720 Chenopodium quinoa HOM05D005342 ORTHO05D006925 9.5e-56 221.1 159 73.0
SalBow8G1060 Salvia bowleyana HOM05D005342 ORTHO05D006925 9.5e-56 221.1 159 71.7
PGR004G0306 Punica granatum HOM05D005342 ORTHO05D006925 1.2e-55 220.7 158 71.5
Os08g0207600 Oryza sativa ssp. japonica HOM05D005342 ORTHO05D006925 1.6e-55 220.3 163 68.1
Solyc02g081660.3 Solanum lycopersicum HOM05D005342 ORTHO05D006925 2.1e-55 219.9 163 68.7
Sopen02g026270 Solanum pennellii HOM05D005342 ORTHO05D006925 2.1e-55 219.9 163 68.7
Atru.chr10.317 Acer truncatum HOM05D005342 ORTHO05D006925 3.6e-55 219.2 163 69.3
MD05G1246900 Malus domestica HOM05D005342 ORTHO05D006925 4.7e-55 218.8 166 71.7
PGSC0003DMG400017735 Solanum tuberosum HOM05D005342 ORTHO05D006925 4.7e-55 218.8 163 68.1
AUR62043831 Chenopodium quinoa HOM05D005342 ORTHO05D006925 6.2e-55 218.4 158 72.2
RcHm_v2.0_Chr5g0021061 Rosa chinensis HOM05D005342 ORTHO05D006925 8.0e-55 218.0 159 72.3
SGA_v2.0_scaffold298G47707 Striga asiatica HOM05D005342 ORTHO05D006925 1.0e-54 217.6 163 69.9
ATR0763G223 Amborella trichopoda HOM05D005342 ORTHO05D006925 1.4e-54 217.2 163 67.5
Medtr5g020440 Medicago truncatula HOM05D005342 ORTHO05D006925 1.4e-54 217.2 163 69.3
Nitab4.5_0013176g0020 Nicotiana tabacum HOM05D005342 ORTHO05D006925 1.4e-54 217.2 172 67.4
FvH4_3g12950 Fragaria vesca HOM05D005342 ORTHO05D006925 2.3e-54 216.5 163 69.9
Eucgr.D00013 Eucalyptus grandis HOM05D005342 ORTHO05D006925 3.1e-54 216.1 163 69.9
SHI17083 Sapria himalayana HOM05D005342 ORTHO05D006925 3.1e-54 216.1 158 69.0
CDE03G0515 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 6.8e-54 214.9 159 69.2
CDE06G1455 Ceratophyllum demersum HOM05D005342 ORTHO05D006925 6.8e-54 214.9 159 69.2
Medtr6g024095 Medicago truncatula HOM05D005342 ORTHO05D006925 6.8e-54 214.9 163 68.7
Zm00001eb171110 Zea mays HOM05D005342 ORTHO05D006925 8.9e-54 214.5 163 66.9
CAN.G809.68 Capsicum annuum HOM05D005342 ORTHO05D006925 1.2e-53 214.2 167 68.3
MD10G1227500 Malus domestica HOM05D005342 ORTHO05D006925 1.5e-53 213.8 166 70.5
FAN11G0369 Fragaria x ananassa HOM05D005342 ORTHO05D006925 4.4e-53 212.2 174 66.7
Medtr1g033240 Medicago truncatula HOM05D005342 ORTHO05D006925 2.2e-52 209.9 163 68.1
Aqoxy1G01397 Aquilegia oxysepala HOM05D005342 ORTHO05D006925 4.9e-52 208.8 158 68.4
Cfa001127 Carpinus fangiana HOM05D005342 ORTHO05D006925 8.3e-52 208.0 150 74.0
FAN16G1572 Fragaria x ananassa HOM05D005342 ORTHO05D006925 8.3e-52 208.0 169 67.5
unitig_749.g13576 Utricularia gibba HOM05D005342 ORTHO05D006925 3.2e-51 206.1 163 64.4
Ah.11g044120 Amaranthus hybridus HOM05D005342 ORTHO05D006925 7.0e-51 204.9 198 59.1
ClCG01G025520 Citrullus lanatus HOM05D005342 ORTHO05D006925 7.0e-51 204.9 163 68.1
FAN21G1494 Fragaria x ananassa HOM05D005342 ORTHO05D006925 9.2e-51 204.5 178 63.5
FAN25G1408 Fragaria x ananassa HOM05D005342 ORTHO05D006925 1.3e-49 200.7 180 62.2
Rhsim03G0048600 Rhododendron simsii HOM05D005342 ORTHO05D006925 2.5e-48 196.4 183 60.7
arahy.Tifrunner.gnm1.ann1.T4IDLE Arachis hypogaea HOM05D005342 ORTHO05D006925 6.8e-46 188.3 163 62.0
Rhsim05G0150700 Rhododendron simsii HOM05D005342 ORTHO05D006925 8.9e-46 188.0 200 58.0
HPP92_001865 Vanilla planifolia HOM05D005342 ORTHO05D006925 1.2e-45 187.6 138 71.7
vmacro07644 Vaccinium macrocarpon HOM05D005342 ORTHO05D006925 4.6e-42 175.6 173 59.0
Duzib132G0347 Durio zibethinus HOM05D005342 ORTHO05D006925 2.1e-39 166.8 160 58.1
Actinidia37827 Actinidia chinensis HOM05D005342 ORTHO05D006925 1.4e-35 154.1 104 77.9
Sc17g0004080 Simmondsia chinensis HOM05D005342 ORTHO05D006925 6.0e-34 148.7 109 72.5
AagrBONN_evm.TU.Sc2ySwM_368.2515 Anthoceros agrestis HOM05D005342 ORTHO05D006925 1.5e-32 144.1 158 47.5
Cc09_g05190 Coffea canephora HOM05D005342 ORTHO05D006925 2.4e-30 136.7 85 78.8
Prupe.4G117700 Prunus persica HOM05D005342 ORTHO05D006925 4.0e-30 136.0 143 54.5
SMO347G0253 Selaginella moellendorffii HOM05D005342 ORTHO05D006925 4.0e-30 136.0 156 46.2
SGA_v2.0_scaffold175G39327 Striga asiatica HOM05D005342 ORTHO05D006925 1.2e-29 134.4 142 54.2
Mapoly0029s0109 Marchantia polymorpha HOM05D005342 ORTHO05D006925 2.0e-29 133.7 163 45.4
Pp3c8_14960 Physcomitrium patens HOM05D005342 ORTHO05D006925 4.9e-28 129.0 158 43.7
BcaB04g18195 Brassica carinata HOM05D005342 ORTHO05D006925 5.6e-24 115.5 98 58.2
CBR_g3497 Chara braunii HOM05D005342 ORTHO05D006925 3.6e-23 112.8 155 38.1
Cc09_g05200 Coffea canephora HOM05D005342 ORTHO05D006925 3.8e-20 102.8 77 72.7
BraA08t33082Z Brassica rapa HOM05D005342 ORTHO05D006925 1.6e-15 87.4 88 59.1
Nitab4.5_0006794g0030 Nicotiana tabacum HOM05D005342 ORTHO05D006925 1.8e-09 67.4 44 68.2
BolC8t48183H Brassica oleracea HOM05D005342 ORTHO05D042222 8.7e-09 65.1 35 80.0
A08p10870 Brassica napus HOM05D005342 ORTHO05D042222 2.1e-07 60.5 34 73.5
SEGI_07430 Sequoiadendron giganteum HOM05D005342 ORTHO05D006925 1.1e-06 58.2 51 62.7


User provided reference genes

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