Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007043 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.2e-30 134.0 100 100.0
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.4e-29 132.1 100 99.0
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 5.6e-15 84.3 99 74.7
Rhsim02G0044100 Rhododendron simsii HOM05D006910 ORTHO05D008937 7.4e-15 84.0 102 70.6
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 4.5e-12 74.7 86 70.9
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 2.2e-11 72.4 43 74.4
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 3.8e-11 71.6 44 68.2
Nitab4.5_0008073g0040 Nicotiana tabacum HOM05D009844 ORTHO05D007252 4.9e-11 71.2 43 65.1
Actinidia11375 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.4e-10 69.7 45 73.3
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.5e-10 68.9 44 65.9
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 3.2e-10 68.6 87 77.0
CiPaw.01G177500 Carya illinoinensis HOM05D006910 ORTHO05D008937 4.2e-10 68.2 86 73.3
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 5.5e-10 67.8 86 72.1
AUR62025443 Chenopodium quinoa HOM05D006910 ORTHO05D008937 9.3e-10 67.0 43 60.5
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 9.3e-10 67.0 80 76.2
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 9.3e-10 67.0 42 66.7
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 9.3e-10 67.0 45 68.9
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.2e-09 66.6 45 64.4
ECA248G3309 Erigeron canadensis HOM05D006910 ORTHO05D008937 1.6e-09 66.2 43 65.1
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.6e-09 66.2 45 60.0
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.6e-09 66.2 44 65.9
AUR62018038 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.1e-09 65.9 42 66.7
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 2.1e-09 65.9 44 61.4
Cpa.g.sc59.4 Carica papaya HOM05D006910 ORTHO05D008937 2.7e-09 65.5 44 61.4
Eucgr.H00126 Eucalyptus grandis HOM05D006910 ORTHO05D008937 4.6e-09 64.7 45 60.0
SGA_v2.0_scaffold67G22680 Striga asiatica HOM05D006910 ORTHO05D008937 4.6e-09 64.7 42 64.3
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 6.0e-09 64.3 43 65.1
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 7.9e-09 63.9 44 59.1
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 7.9e-09 63.9 45 60.0
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 7.9e-09 63.9 45 60.0
COL.COLO4_15971 Corchorus olitorius HOM05D006910 ORTHO05D008937 1.0e-08 63.5 45 62.2
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.0e-08 63.5 37 64.9
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 1.0e-08 63.5 43 65.1
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.3e-08 63.2 45 60.0
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 1.3e-08 63.2 45 57.8
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 1.8e-08 62.8 44 63.6
MD13G1221900 Malus domestica HOM05D006910 ORTHO05D008937 1.8e-08 62.8 45 60.0
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 1.8e-08 62.8 45 60.0
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 1.8e-08 62.8 43 65.1
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 1.8e-08 62.8 45 57.8
Hund20492 Selenicereus undatus HOM05D006910 ORTHO05D008937 1.8e-08 62.8 45 60.0
Ah.13g074730 Amaranthus hybridus HOM05D006910 ORTHO05D008937 2.3e-08 62.4 42 61.9
AUR62015241 Chenopodium quinoa HOM05D006910 ORTHO05D008937 2.3e-08 62.4 42 61.9
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 2.3e-08 62.4 44 59.1
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 3.0e-08 62.0 43 62.8
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 3.0e-08 62.0 44 56.8
arahy.Tifrunner.gnm1.ann1.DX8ZNF Arachis hypogaea HOM05D006910 ORTHO05D008937 3.9e-08 61.6 38 65.8
arahy.Tifrunner.gnm1.ann1.YFRU1Z Arachis hypogaea HOM05D006910 ORTHO05D008937 3.9e-08 61.6 38 65.8
EL10Ac3g06675 Beta vulgaris HOM05D006910 ORTHO05D008937 3.9e-08 61.6 44 59.1
Sopen09g033910 Solanum pennellii HOM05D006910 ORTHO05D008937 3.9e-08 61.6 43 62.8
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 5.1e-08 61.2 45 62.2
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 5.1e-08 61.2 42 59.5
HanXRQChr01g0023021 Helianthus annuus HOM05D006910 ORTHO05D008937 5.1e-08 61.2 42 61.9
Lalb_Chr06g0169541 Lupinus albus HOM05D006910 ORTHO05D008937 5.1e-08 61.2 43 58.1
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 6.7e-08 60.8 45 60.0
Potri.010G065400 Populus trichocarpa HOM05D006910 ORTHO05D008937 6.7e-08 60.8 44 59.1
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 6.7e-08 60.8 86 70.9
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 8.7e-08 60.5 43 62.8
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.5e-07 59.7 85 67.1
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 1.5e-07 59.7 44 59.1
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.5e-07 59.7 86 67.4
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 1.9e-07 59.3 43 60.5
Glyma.10G190700 Glycine max HOM05D006910 ORTHO05D008937 1.9e-07 59.3 42 57.1
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 1.9e-07 59.3 42 59.5
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 1.9e-07 59.3 44 54.5
Nitab4.5_0000355g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 3.3e-07 58.5 43 60.5
Migut.G00574 Erythranthe guttata HOM05D006910 ORTHO05D008937 5.7e-07 57.8 43 60.5
Nitab4.5_0002210g0060 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.7e-07 57.8 108 32.4
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 9.6e-07 57.0 43 55.8
Peaxi162Scf01044g00225 Petunia axillaris HOM05D006910 ORTHO05D008937 9.6e-07 57.0 43 58.1
SEGI_24294 Sequoiadendron giganteum HOM05D006910 ORTHO05D008937 9.6e-07 57.0 43 48.8
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.3e-06 56.6 41 61.0
Hma1.2p1_0366F.1_g136940 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 1.6e-06 56.2 86 36.0
SalBow2G0872 Salvia bowleyana HOM05D006910 ORTHO05D008937 1.6e-06 56.2 43 60.5
Sabra10G0041700 Salix brachista HOM05D006910 ORTHO05D008937 2.1e-06 55.8 44 54.5
Sabra13G0020900 Salix brachista HOM05D000307 ORTHO05D000166 2.1e-06 55.8 44 54.5
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 6.2e-06 54.3 42 57.1
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 6.2e-06 54.3 44 52.3


User provided reference genes

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