Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0007038 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 6.3e-244 847.0 436 100.0
CSS0038584 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 5.9e-194 681.0 453 83.0
CSS0046165 Camellia sinensis var. sinensis HOM05D005555 ORTHO05D006923 6.6e-185 651.0 451 78.9
Dinv22259 Davidia involucrata HOM05D005555 ORTHO05D006923 8.9e-182 640.6 451 78.0
Eucgr.F03470 Eucalyptus grandis HOM05D005555 ORTHO05D006923 1.1e-179 633.6 444 77.3
GSVIVG01037655001 Vitis vinifera HOM05D005555 ORTHO05D006923 7.8e-178 627.5 443 77.4
TWI39G0347 Tripterygium wilfordii HOM05D005555 ORTHO05D006923 1.3e-177 626.7 451 76.1
Gorai.009G438400 Gossypium raimondii HOM05D005555 ORTHO05D006923 1.9e-176 622.9 444 77.0
TAR627G0887 Trochodendron aralioides HOM05D005555 ORTHO05D006923 2.8e-175 619.0 451 75.6
Rhsim06G0217300 Rhododendron simsii HOM05D005555 ORTHO05D006923 2.6e-173 612.5 467 72.4
Duzib268G1179 Durio zibethinus HOM05D005555 ORTHO05D006923 2.2e-172 609.4 443 75.8
CsaV3_7G021840 Cucumis sativus L. HOM05D005555 ORTHO05D006923 3.5e-170 602.1 447 74.0
Actinidia35345 Actinidia chinensis HOM05D005555 ORTHO05D006923 1.7e-169 599.7 450 73.6
Gohir.A04G016500 Gossypium hirsutum HOM05D005555 ORTHO05D006923 8.6e-169 597.4 444 74.1
QL08p010014 Quercus lobata HOM05D005555 ORTHO05D006923 3.3e-168 595.5 449 73.7
Manes.15G071400 Manihot esculenta HOM05D005555 ORTHO05D006923 1.2e-167 593.6 446 74.0
Sed0005603 Sechium edule HOM05D005555 ORTHO05D006923 2.8e-167 592.4 443 73.6
THA.LOC104817858 Tarenaya hassleriana HOM05D005555 ORTHO05D006923 5.2e-166 588.2 448 74.1
Thecc.07G035900 Theobroma cacao HOM05D005555 ORTHO05D006923 5.2e-166 588.2 443 73.8
Sp1g37550 Schrenkiella parvula HOM05D005555 ORTHO05D006923 1.5e-165 586.6 436 75.0
Gohir.D05G369700 Gossypium hirsutum HOM05D005555 ORTHO05D006923 4.9e-164 581.6 438 73.7
ECA240G0357 Erigeron canadensis HOM05D005555 ORTHO05D006923 1.4e-163 580.1 438 73.1
Ciclev10008353m.g Citrus clementina HOM05D005555 ORTHO05D006923 1.9e-163 579.7 451 72.9
A06p02920 Brassica napus HOM05D005555 ORTHO05D006923 7.1e-163 577.8 443 73.6
BraA06t23497Z Brassica rapa HOM05D005555 ORTHO05D006923 7.1e-163 577.8 443 73.6
BcaC08g43248 Brassica carinata HOM05D005555 ORTHO05D006923 1.2e-162 577.0 443 73.4
C06p05960 Brassica napus HOM05D005555 ORTHO05D006923 1.2e-162 577.0 443 73.4
BolC6t35709H Brassica oleracea HOM05D005555 ORTHO05D006923 1.2e-162 577.0 443 73.4
Cpa.g.sc12.303 Carica papaya HOM05D005555 ORTHO05D006923 2.7e-162 575.9 451 71.2
MSTRG.6923 Avicennia marina HOM05D005555 ORTHO05D006923 7.8e-162 574.3 442 70.8
CiPaw.12G130100 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.3e-161 573.5 450 70.2
RcHm_v2.0_Chr2g0139231 Rosa chinensis HOM05D005555 ORTHO05D006923 2.3e-161 572.8 451 69.8
Migut.M01757 Erythranthe guttata HOM05D005555 ORTHO05D006923 3.0e-161 572.4 442 69.7
AL1G58400 Arabidopsis lyrata HOM05D005555 ORTHO05D006923 1.1e-160 570.5 443 72.5
Nn1g07133 Nelumbo nucifera HOM05D005555 ORTHO05D006923 1.1e-160 570.5 449 70.6
Carub.0001s3974 Capsella rubella HOM05D005555 ORTHO05D006923 1.9e-160 569.7 443 72.2
AT1G50710 Arabidopsis thaliana HOM05D005555 ORTHO05D006923 9.6e-160 567.4 443 72.2
BcaC08g43250 Brassica carinata HOM05D005555 ORTHO05D006923 9.6e-160 567.4 443 72.2
Lj8C169T24 Lonicera japonica HOM05D005555 ORTHO05D006923 1.3e-159 567.0 483 67.9
Thhalv10011513m.g Eutrema salsugineum HOM05D005555 ORTHO05D006923 2.1e-159 566.2 443 72.0
Aa31LG10G3630 Aethionema arabicum HOM05D005555 ORTHO05D006923 2.8e-159 565.8 447 70.9
CARHR040810 Cardamine hirsuta HOM05D005555 ORTHO05D006923 4.8e-159 565.1 443 71.8
Solyc12g005050.2 Solanum lycopersicum HOM05D005555 ORTHO05D006923 4.8e-159 565.1 440 70.9
CiPaw.11G190000 Carya illinoinensis HOM05D005555 ORTHO05D006923 1.4e-158 563.5 449 69.9
PSO541G4760 Papaver somniferum HOM05D005555 ORTHO05D006923 1.8e-158 563.1 438 70.8
Lj6g0008930 Lotus japonicus HOM05D005555 ORTHO05D006923 1.2e-157 560.5 451 67.8
Sopen12g001050 Solanum pennellii HOM05D005555 ORTHO05D006923 1.2e-157 560.5 440 70.5
CANSAT11G1088 Cannabis sativa HOM05D005555 ORTHO05D006923 1.5e-157 560.1 451 69.8
Gorai.009G438500 Gossypium raimondii HOM05D005555 ORTHO05D006923 4.4e-157 558.5 444 70.7
Nitab4.5_0008473g0010 Nicotiana tabacum HOM05D005555 ORTHO05D006923 1.7e-156 556.6 449 68.4
Aqoxy1G02148 Aquilegia oxysepala HOM05D005555 ORTHO05D006923 1.1e-155 553.9 435 70.1
MELO3C013162.2 Cucumis melo HOM05D005555 ORTHO05D006923 1.1e-155 553.9 465 68.0
PGSC0003DMG400027869 Solanum tuberosum HOM05D005555 ORTHO05D006923 1.4e-155 553.5 440 69.3
ClCG09G010820 Citrullus lanatus HOM05D005555 ORTHO05D006923 5.4e-155 551.6 491 65.8
Hund15555 Selenicereus undatus HOM05D005555 ORTHO05D006923 7.1e-155 551.2 440 68.2
BcaB02g11175 Brassica carinata HOM05D005555 ORTHO05D006923 1.2e-154 550.4 432 72.2
arahy.Tifrunner.gnm1.ann1.P3VUIG Arachis hypogaea HOM05D005555 ORTHO05D006923 3.5e-154 548.9 450 68.7
DCAR_016709 Daucus carota HOM05D005555 ORTHO05D006923 3.5e-154 548.9 440 70.0
arahy.Tifrunner.gnm1.ann1.UR7PB1 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.6e-154 548.5 452 68.1
FAN14G2902 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.0e-153 547.4 451 67.0
Lalb_Chr20g0113831 Lupinus albus HOM05D005555 ORTHO05D006923 1.3e-153 547.0 452 66.8
EL10Ac2g03146 Beta vulgaris HOM05D005555 ORTHO05D006923 3.0e-153 545.8 467 66.6
PSO675G4173 Papaver somniferum HOM05D005555 ORTHO05D006923 5.1e-153 545.0 438 68.7
FAN05G3309 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.7e-153 544.3 451 67.0
PGR031G0129 Punica granatum HOM05D005555 ORTHO05D006923 1.9e-152 543.1 449 68.2
SGA_v2.0_scaffold172G39000 Striga asiatica HOM05D005555 ORTHO05D006923 2.5e-152 542.7 446 67.0
arahy.Tifrunner.gnm1.ann1.QY89IE Arachis hypogaea HOM05D005555 ORTHO05D006923 3.3e-152 542.3 452 67.5
Cc05_g13620 Coffea canephora HOM05D005555 ORTHO05D006923 4.3e-152 542.0 435 69.0
MD17G1190200 Malus domestica HOM05D005555 ORTHO05D006923 4.3e-152 542.0 451 67.2
Potri.011G090800 Populus trichocarpa HOM05D005555 ORTHO05D006923 5.6e-152 541.6 451 69.2
Cc07_g19690 Coffea canephora HOM05D005555 ORTHO05D006923 9.6e-152 540.8 437 68.9
Ah.10g032310 Amaranthus hybridus HOM05D005555 ORTHO05D006923 2.8e-151 539.3 451 67.8
BraA05t20906Z Brassica rapa HOM05D005555 ORTHO05D006923 2.8e-151 539.3 419 72.1
Sc03g0008570 Simmondsia chinensis HOM05D005555 ORTHO05D006923 3.6e-151 538.9 401 72.6
Lsat_1_v5_gn_2_47780 Lactuca sativa HOM05D005555 ORTHO05D006923 4.8e-151 538.5 428 71.3
Prupe.3G065100 Prunus persica HOM05D005555 ORTHO05D006923 4.8e-151 538.5 451 68.3
VMungo0540G1244 Vigna mungo HOM05D005555 ORTHO05D006923 1.8e-150 536.6 452 65.9
Nn1g03520 Nelumbo nucifera HOM05D005555 ORTHO05D006923 4.0e-150 535.4 439 67.9
Glyma.08G316800 Glycine max HOM05D005555 ORTHO05D006923 9.0e-150 534.3 452 65.9
A05p19990 Brassica napus HOM05D005555 ORTHO05D006923 2.6e-149 532.7 419 72.1
TPR.G33802 Trifolium pratense HOM05D005555 ORTHO05D006923 2.6e-149 532.7 458 66.2
Atru.chr2.3417 Acer truncatum HOM05D005555 ORTHO05D006923 1.3e-148 530.4 451 68.7
DCAR_001508 Daucus carota HOM05D005555 ORTHO05D006923 1.3e-148 530.4 435 69.0
CAN.G542.3 Capsicum annuum HOM05D005555 ORTHO05D006923 4.9e-148 528.5 440 66.6
Glyma.18G096300 Glycine max HOM05D005555 ORTHO05D006923 8.4e-148 527.7 452 64.8
Phvul.006G044000 Phaseolus vulgaris HOM05D005555 ORTHO05D006923 1.4e-147 526.9 452 65.0
Medtr3g052180 Medicago truncatula HOM05D005555 ORTHO05D006923 1.9e-147 526.6 447 65.8
Psat5g178680 Pisum sativum HOM05D005555 ORTHO05D006923 9.3e-147 524.2 449 65.3
BcaB07g33510 Brassica carinata HOM05D005555 ORTHO05D006923 1.3e-145 520.4 444 68.5
HanXRQChr03g0076481 Helianthus annuus HOM05D005555 ORTHO05D006923 8.7e-145 517.7 395 73.2
Medtr5g049170 Medicago truncatula HOM05D005555 ORTHO05D006923 2.5e-144 516.2 447 64.7
CDE04G3207 Ceratophyllum demersum HOM05D005555 ORTHO05D006923 1.4e-142 510.4 440 64.3
MBI05_g12021_MAGBIO Magnolia biondii HOM05D005555 ORTHO05D006923 2.4e-142 509.6 440 65.7
Sabra11G0086200 Salix brachista HOM05D005555 ORTHO05D006923 3.1e-142 509.2 448 66.7
FAN02G4472 Fragaria x ananassa HOM05D005555 ORTHO05D006923 1.5e-141 506.9 451 63.2
arahy.Tifrunner.gnm1.ann1.GVQ212 Arachis hypogaea HOM05D005555 ORTHO05D006923 1.7e-140 503.4 481 61.5
Nitab4.5_0000981g0050 Nicotiana tabacum HOM05D005555 ORTHO05D006923 4.9e-140 501.9 488 61.1
MD09G1208700 Malus domestica HOM05D005555 ORTHO05D006923 5.5e-139 498.4 436 65.6
Dinv40759 Davidia involucrata HOM05D005555 ORTHO05D006923 3.5e-138 495.7 400 72.0
vmacro11723 Vaccinium macrocarpon HOM05D005555 ORTHO05D006923 4.6e-138 495.4 533 57.6
ATR0752G192 Amborella trichopoda HOM05D005555 ORTHO05D006923 1.0e-137 494.2 445 62.2
Ca_14731_v3 Cicer arietinum L. HOM05D005555 ORTHO05D006923 1.1e-136 490.7 530 55.1
MD03G1200100 Malus domestica HOM05D005555 ORTHO05D006923 1.1e-136 490.7 453 61.4
Peaxi162Scf00660g00816 Petunia axillaris HOM05D005555 ORTHO05D006923 9.0e-134 481.1 399 67.2
unitig_744.g24404 Utricularia gibba HOM05D005555 ORTHO05D006923 9.0e-134 481.1 421 64.1
Haze_09680 Corylus avellana HOM05D005555 ORTHO05D006923 2.0e-133 479.9 496 59.1
AUR62018195 Chenopodium quinoa HOM05D005555 ORTHO05D006923 6.5e-132 474.9 451 62.7
Gohir.D05G369900 Gossypium hirsutum HOM05D005555 ORTHO05D006923 5.5e-131 471.9 440 63.6
HanXRQChr05g0134351 Helianthus annuus HOM05D005555 ORTHO05D006923 1.8e-129 466.8 440 63.4
Cfa020338 Carpinus fangiana HOM05D005555 ORTHO05D006923 1.5e-128 463.8 403 67.0
HPP92_010410 Vanilla planifolia HOM05D005555 ORTHO05D006923 3.4e-125 452.6 448 58.7
RcHm_v2.0_Chr5g0039771 Rosa chinensis HOM05D005555 ORTHO05D006923 4.2e-123 445.7 436 58.5
Gohir.D05G370300 Gossypium hirsutum HOM05D005555 ORTHO05D006923 1.6e-122 443.7 396 65.9
FvH4_3g22760 Fragaria vesca HOM05D005555 ORTHO05D006923 1.5e-117 427.2 434 58.1
Sed0020027 Sechium edule HOM05D005555 ORTHO05D006923 2.5e-115 419.9 405 61.7
Prupe.4G214200 Prunus persica HOM05D005555 ORTHO05D006923 5.1e-113 412.1 386 60.4
Mapoly0032s0110 Marchantia polymorpha HOM05D005555 ORTHO05D006923 3.7e-111 406.0 457 51.0
FvH4_6g31880 Fragaria vesca HOM05D005555 ORTHO05D006923 2.4e-110 403.3 339 66.1
SMO352G0045 Selaginella moellendorffii HOM05D005555 ORTHO05D006923 4.5e-109 399.1 420 54.0
Zm00001eb230170 Zea mays HOM05D005555 ORTHO05D006923 1.9e-107 393.7 437 53.8
FAN16G3656 Fragaria x ananassa HOM05D005555 ORTHO05D006923 2.2e-103 380.2 415 55.7
Pp3c17_11280 Physcomitrium patens HOM05D005555 ORTHO05D006923 7.7e-101 371.7 437 49.0
TPR.G5778 Trifolium pratense HOM05D005555 ORTHO05D006923 1.7e-100 370.5 337 62.3
arahy.Tifrunner.gnm1.ann1.92YVPD Arachis hypogaea HOM05D005555 ORTHO05D006923 2.1e-98 363.6 441 50.6
AUR62038682 Chenopodium quinoa HOM05D005555 ORTHO05D006923 3.4e-96 356.3 449 50.8
arahy.Tifrunner.gnm1.ann1.21WID0 Arachis hypogaea HOM05D005555 ORTHO05D006923 4.0e-89 332.8 448 47.1
FAN25G0297 Fragaria x ananassa HOM05D005555 ORTHO05D006923 8.8e-89 331.6 355 56.6
CBR_g19746 Chara braunii HOM05D005555 ORTHO05D006923 1.5e-59 234.6 370 37.6
Medtr5g049150 Medicago truncatula HOM05D005555 ORTHO05D006923 1.2e-53 214.9 198 62.6
CBR_g6714 Chara braunii HOM05D005555 ORTHO05D006923 1.9e-51 207.6 409 33.7
Os02g0119100 Oryza sativa ssp. japonica HOM05D005555 ORTHO05D006923 3.3e-27 127.1 183 46.4
TPR.G5733 Trifolium pratense HOM05D005555 ORTHO05D006923 1.8e-25 121.3 99 65.7
Hma1.2p1_0206F.1_g087650 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 1.1e-17 95.5 63 77.8
Hma1.2p1_0545F.1_g176020 Hydrangea macrophylla HOM05D005555 ORTHO05D006923 2.4e-17 94.4 46 95.7
Lsat_1_v5_gn_9_94361 Lactuca sativa HOM05D005555 ORTHO05D006923 1.1e-14 85.5 70 64.3
Actinidia13832 Actinidia chinensis HOM05D005555 ORTHO05D006923 5.3e-09 66.6 53 71.7


User provided reference genes

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