Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.7e-167 592.8 340 100.0
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.7e-152 541.2 341 91.5
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.8e-109 397.9 344 71.2
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 9.0e-89 331.3 338 62.4
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 4.1e-81 305.8 346 57.2
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 5.3e-81 305.4 337 60.8
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 5.5e-78 295.4 338 59.5
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 9.3e-78 294.7 338 56.2
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 1.5e-75 287.3 315 56.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.8e-74 283.1 311 56.9
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.1e-73 281.2 317 59.6
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.8e-71 272.7 336 55.7
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 1.6e-69 267.3 314 53.5
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 1.8e-68 263.8 333 54.1
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.0e-63 248.1 323 50.5
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.3e-63 247.7 335 52.8
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 7.4e-59 231.9 361 46.0
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 9.7e-59 231.5 304 48.4
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 1.3e-58 231.1 307 48.5
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 1.7e-58 230.7 322 51.9
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 3.1e-57 226.5 377 46.9
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 3.5e-56 223.0 333 52.0
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 3.5e-56 223.0 333 52.0
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.9e-54 217.2 311 45.7
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 1.9e-54 217.2 310 46.1
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.4e-54 214.9 396 41.7
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 6.1e-53 212.2 396 41.7
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.8e-52 210.7 349 45.6
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.8e-52 210.7 337 46.9
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 2.3e-52 210.3 346 46.5
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 4.0e-52 209.5 350 47.7
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.5e-51 207.6 284 47.2
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.5e-51 205.3 343 47.8
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 7.5e-51 205.3 311 47.3
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 4.1e-49 199.5 364 42.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 7.0e-49 198.7 331 45.6
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.5e-48 196.4 329 44.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 5.0e-47 192.6 327 42.5
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 5.0e-47 192.6 315 43.8
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 6.5e-47 192.2 341 45.7
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 1.1e-46 191.4 372 41.9
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 1.1e-46 191.4 347 45.5
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 1.1e-46 191.4 347 45.5
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.9e-46 190.7 368 44.0
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 5.5e-46 189.1 371 40.4
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 9.4e-46 188.3 363 44.1
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.6e-45 187.6 390 42.3
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 2.7e-45 186.8 385 39.2
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 3.6e-45 186.4 418 38.5
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 4.7e-45 186.0 365 42.5
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 4.7e-45 186.0 455 36.5
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.0e-44 184.9 456 36.4
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 1.4e-44 184.5 338 42.9
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 4.0e-44 183.0 266 45.5
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 4.4e-43 179.5 313 42.8
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 2.8e-42 176.8 319 42.6
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.8e-42 176.8 297 42.1
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 3.7e-42 176.4 434 38.2
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 8.3e-42 175.3 292 45.5
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.7e-40 170.2 368 38.9
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 5.9e-40 169.1 353 40.5
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.9e-40 169.1 340 39.4
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 3.8e-39 166.4 297 42.8
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 3.8e-39 166.4 283 44.9
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 3.8e-39 166.4 301 39.2
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 9.4e-38 161.8 286 43.7
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 2.1e-37 160.6 220 53.6
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 2.7e-37 160.2 363 40.5
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 6.1e-37 159.1 445 34.6
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 6.1e-37 159.1 321 42.7
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 2.3e-36 157.1 328 38.7
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 6.8e-36 155.6 286 43.0
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 6.8e-36 155.6 401 33.7
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 1.2e-35 154.8 387 35.7
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 4.4e-35 152.9 335 38.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.7e-35 152.5 238 48.7
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 9.8e-35 151.8 364 35.2
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 9.8e-35 151.8 323 40.9
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 9.8e-35 151.8 315 40.3
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 6.3e-34 149.1 341 36.4
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.3e-34 149.1 361 36.3
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.4e-33 147.9 419 36.3
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 2.4e-33 147.1 411 35.8
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 9.1e-33 145.2 378 34.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 1.2e-32 144.8 345 36.2
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.7e-32 143.7 337 36.8
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 1.3e-31 141.4 292 40.1
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.7e-31 141.0 310 38.1
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.7e-31 141.0 310 38.1
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 6.6e-31 139.0 351 35.6
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 1.5e-30 137.9 472 30.1
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.6e-29 134.4 302 39.7
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.1e-29 134.0 440 29.8
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.8e-29 133.7 340 36.2
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 4.7e-29 132.9 409 32.3
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 4.7e-29 132.9 440 29.8
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.8e-28 131.0 431 33.4
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 1.8e-28 131.0 335 35.5
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 4.0e-28 129.8 367 36.8
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.0e-28 129.8 245 40.0
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.8e-28 129.0 415 34.9
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 4.4e-27 126.3 323 33.7
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 9.8e-27 125.2 427 35.6
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.7e-26 123.2 335 34.3
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 4.9e-26 122.9 347 33.7
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 6.4e-26 122.5 378 34.4
Lalb_Chr05g0216131 Lupinus albus HOM05D001142 ORTHO05D003453 8.3e-26 122.1 299 35.8
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-25 121.7 369 34.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 2.4e-25 120.6 427 35.4
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 3.2e-25 120.2 393 31.3
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.2e-24 118.2 345 34.5
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 2.0e-24 117.5 408 30.6
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 5.9e-24 115.9 469 31.8
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 5.9e-24 115.9 381 31.5
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 7.8e-24 115.5 400 31.0
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.3e-23 114.8 221 39.8
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 2.3e-23 114.0 438 29.5
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 3.0e-23 113.6 415 29.9
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 3.0e-23 113.6 415 29.9
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 5.0e-23 112.8 319 35.1
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.1e-22 111.7 325 36.0
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.3e-22 109.8 446 29.8
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 9.5e-22 108.6 282 33.3
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 6.2e-21 105.9 388 30.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 8.0e-21 105.5 389 30.6
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 8.0e-21 105.5 339 35.4
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 3.1e-20 103.6 389 29.8
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 5.2e-20 102.8 339 31.0
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 1.5e-19 101.3 411 28.5
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 2.6e-19 100.5 111 53.2
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.4e-19 100.1 385 30.6
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.2e-18 97.4 387 29.7
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 2.7e-16 90.5 359 32.6
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 7.8e-16 89.0 409 29.3
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.3e-15 88.2 335 32.5
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.3e-15 87.4 436 27.8
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.5e-14 84.7 311 32.2
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.9e-14 84.3 404 30.9
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 5.6e-14 82.8 395 29.1
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 6.2e-13 79.3 100 50.0
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.1e-12 78.6 320 28.4
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.8e-12 77.8 427 28.3
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 3.1e-12 77.0 313 28.4
MD02G1269600 Malus domestica HOM05D003733 ORTHO05D004035 5.2e-12 76.3 135 40.0
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 4.4e-11 73.2 394 26.6
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.4e-11 73.2 291 32.6
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 9.8e-11 72.0 287 29.6
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 9.8e-11 72.0 287 29.6
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.3e-10 71.6 393 30.5
Thhalv10026061m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 2.2e-10 70.9 310 30.6
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 6.4e-10 69.3 219 31.5
TAR628G0576 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.1e-09 68.6 125 39.2
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.2e-09 67.0 303 30.7
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 9.2e-09 65.5 338 31.4
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 1.2e-08 65.1 284 31.0
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.2e-08 65.1 193 33.7
Ah.03g142000 Amaranthus hybridus HOM05D000288 ORTHO05D000173 2.7e-08 63.9 443 25.5
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 3.5e-08 63.5 337 31.2
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 4.6e-08 63.2 43 67.4
Sc16g0000800 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-07 61.6 137 39.4
Zm00001eb074340 Zea mays HOM05D003733 ORTHO05D004035 1.7e-07 61.2 106 44.3
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.3e-07 60.8 335 27.2
Sabra16G0157300 Salix brachista HOM05D003733 ORTHO05D004035 3.0e-07 60.5 308 27.6
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 3.0e-07 60.5 422 26.1
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 6.6e-07 59.3 71 46.5
Sabra16G0155500 Salix brachista HOM05D003733 ORTHO05D004035 4.3e-06 56.6 284 27.8
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 9.5e-06 55.5 313 27.5


User provided reference genes

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