Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006968 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 2.2e-116 422.5 255 100.0
vmacro11437 Vaccinium macrocarpon HOM05D006525 ORTHO05D007845 4.2e-99 365.2 202 88.1
Rhsim02G0241900 Rhododendron simsii HOM05D006525 ORTHO05D007845 2.7e-98 362.5 200 90.0
Actinidia22144 Actinidia chinensis HOM05D006525 ORTHO05D007845 8.8e-97 357.5 203 88.2
Dinv37543 Davidia involucrata HOM05D006525 ORTHO05D007845 3.8e-92 342.0 206 82.0
MSTRG.11933 Avicennia marina HOM05D006525 ORTHO05D007845 3.6e-90 335.5 200 78.5
Cfa022937 Carpinus fangiana HOM05D006525 ORTHO05D007845 4.7e-90 335.1 204 79.9
QL02p030956 Quercus lobata HOM05D006525 ORTHO05D007845 8.0e-90 334.3 203 80.8
Thecc.03G295800 Theobroma cacao HOM05D006525 ORTHO05D007845 2.3e-89 332.8 203 79.8
Haze_08630 Corylus avellana HOM05D006525 ORTHO05D007845 5.2e-89 331.6 206 78.2
Hma1.2p1_0359F.1_g135310 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 6.8e-89 331.3 200 80.5
Duzib068G0461 Durio zibethinus HOM05D006525 ORTHO05D007845 8.8e-89 330.9 204 77.5
CiPaw.11G122700 Carya illinoinensis HOM05D006525 ORTHO05D007845 2.0e-88 329.7 204 79.4
GSVIVG01019512001 Vitis vinifera HOM05D006525 ORTHO05D007845 4.4e-88 328.6 206 77.7
Prupe.5G117200 Prunus persica HOM05D006525 ORTHO05D007845 2.8e-87 325.9 203 77.8
Ciclev10022095m.g Citrus clementina HOM05D006525 ORTHO05D007845 4.8e-87 325.1 201 78.6
Gorai.007G025600 Gossypium raimondii HOM05D006525 ORTHO05D007845 8.3e-87 324.3 200 78.0
Manes.01G047000 Manihot esculenta HOM05D006525 ORTHO05D007845 1.8e-86 323.2 201 77.6
Atru.chr9.2016 Acer truncatum HOM05D006525 ORTHO05D007845 2.4e-86 322.8 201 78.1
DCAR_027712 Daucus carota HOM05D006525 ORTHO05D007845 5.3e-86 321.6 204 77.9
MD14G1123300 Malus domestica HOM05D006525 ORTHO05D007845 5.3e-86 321.6 206 75.2
Gohir.D11G024000 Gossypium hirsutum HOM05D006525 ORTHO05D007845 9.1e-86 320.9 200 77.0
CANSAT21G0126 Cannabis sativa HOM05D006525 ORTHO05D007845 2.7e-85 319.3 206 74.8
Potri.001G092800 Populus trichocarpa HOM05D006525 ORTHO05D007845 3.5e-85 318.9 204 76.0
SalBow1G4596 Salvia bowleyana HOM05D006525 ORTHO05D007845 3.5e-85 318.9 200 77.5
TWI15G0402 Tripterygium wilfordii HOM05D006525 ORTHO05D007845 3.5e-85 318.9 205 76.1
FAN18G4350 Fragaria x ananassa HOM05D006525 ORTHO05D007845 5.9e-85 318.2 204 75.5
THA.LOC104817658 Tarenaya hassleriana HOM05D006525 ORTHO05D007845 5.9e-85 318.2 204 75.0
Aqoxy5G04177 Aquilegia oxysepala HOM05D006525 ORTHO05D007845 1.3e-84 317.0 201 76.1
FAN13G2324 Fragaria x ananassa HOM05D006525 ORTHO05D007845 1.3e-84 317.0 204 75.5
Lj4g0012415 Lotus japonicus HOM05D006525 ORTHO05D007845 1.3e-84 317.0 204 73.0
SalBow1G2372 Salvia bowleyana HOM05D006525 ORTHO05D007845 1.7e-84 316.6 200 77.0
PGR031G0465 Punica granatum HOM05D006525 ORTHO05D007845 2.2e-84 316.2 203 74.9
Medtr8g099380 Medicago truncatula HOM05D006525 ORTHO05D007845 3.8e-84 315.5 202 73.8
EL10Ac5g12902 Beta vulgaris HOM05D006525 ORTHO05D007845 5.0e-84 315.1 202 72.8
FAN08G2482 Fragaria x ananassa HOM05D000027 ORTHO05D007845 5.0e-84 315.1 203 74.9
Migut.A00669 Erythranthe guttata HOM05D006525 ORTHO05D007845 6.5e-84 314.7 189 79.9
Cpa.g.sc79.53 Carica papaya HOM05D006525 ORTHO05D007845 1.1e-83 313.9 201 76.1
Gohir.A11G024300 Gossypium hirsutum HOM05D006525 ORTHO05D007845 1.1e-83 313.9 200 77.0
AUR62019825 Chenopodium quinoa HOM05D006525 ORTHO05D007845 1.5e-83 313.5 202 74.3
Sabra01G0069100 Salix brachista HOM05D006525 ORTHO05D007845 2.5e-83 312.8 204 74.0
Ca_17485_v3 Cicer arietinum L. HOM05D006525 ORTHO05D007845 5.5e-83 311.6 204 72.5
RcHm_v2.0_Chr7g0195151 Rosa chinensis HOM05D006525 ORTHO05D007845 9.4e-83 310.8 204 73.5
Cc08_g15920 Coffea canephora HOM05D006525 ORTHO05D007845 1.2e-82 310.5 204 74.0
Hund11396 Selenicereus undatus HOM05D006525 ORTHO05D007845 4.7e-82 308.5 202 76.7
Oeu009950.2 Olea europaea HOM05D006525 ORTHO05D007845 8.0e-82 307.8 236 67.8
A07p20960 Brassica napus HOM05D006525 ORTHO05D007845 1.0e-81 307.4 200 72.0
TAR636G1454 Trochodendron aralioides HOM05D006525 ORTHO05D007845 1.0e-81 307.4 187 81.8
BraA07t29782Z Brassica rapa HOM05D006525 ORTHO05D007845 1.4e-81 307.0 200 71.5
Eucgr.D01725 Eucalyptus grandis HOM05D006525 ORTHO05D007845 6.8e-81 304.7 204 75.0
BcaB02g07875 Brassica carinata HOM05D006525 ORTHO05D007845 1.2e-80 303.9 200 70.5
ClCG01G001950 Citrullus lanatus HOM05D006525 ORTHO05D007845 2.0e-80 303.1 203 70.0
Psat7g027440 Pisum sativum HOM05D006525 ORTHO05D007845 2.0e-80 303.1 204 70.6
Sp7g00260 Schrenkiella parvula HOM05D006525 ORTHO05D007845 2.6e-80 302.8 202 69.8
VMungo0251G1352 Vigna mungo HOM05D006525 ORTHO05D007845 2.6e-80 302.8 200 72.0
arahy.Tifrunner.gnm1.ann1.3UM0RM Arachis hypogaea HOM05D006525 ORTHO05D007845 3.4e-80 302.4 209 72.2
CsaV3_5G002090 Cucumis sativus L. HOM05D006525 ORTHO05D007845 3.4e-80 302.4 203 70.0
ECA246G0134 Erigeron canadensis HOM05D006525 ORTHO05D007845 3.4e-80 302.4 203 71.9
Phvul.002G297400 Phaseolus vulgaris HOM05D006525 ORTHO05D007845 3.4e-80 302.4 204 70.6
Sed0028109 Sechium edule HOM05D006525 ORTHO05D007845 3.4e-80 302.4 203 69.0
BcaC08g44560 Brassica carinata HOM05D006525 ORTHO05D007845 4.4e-80 302.0 200 70.5
C06p20270 Brassica napus HOM05D006525 ORTHO05D007845 5.7e-80 301.6 200 70.5
BolC6t37207H Brassica oleracea HOM05D006525 ORTHO05D007845 5.7e-80 301.6 200 70.5
MELO3C005745.2 Cucumis melo HOM05D006525 ORTHO05D007845 5.7e-80 301.6 203 69.5
HanXRQChr13g0415031 Helianthus annuus HOM05D006525 ORTHO05D007845 5.7e-80 301.6 201 74.1
Sopen08g030430 Solanum pennellii HOM05D006525 ORTHO05D007845 5.7e-80 301.6 197 76.6
PGSC0003DMG400012159 Solanum tuberosum HOM05D006525 ORTHO05D007845 5.7e-80 301.6 200 75.0
Glyma.08G022100 Glycine max HOM05D006525 ORTHO05D007845 1.3e-79 300.4 204 71.6
Lalb_Chr16g0390611 Lupinus albus HOM05D006525 ORTHO05D007845 1.3e-79 300.4 199 73.4
Aa31LG9G310 Aethionema arabicum HOM05D006525 ORTHO05D007845 1.7e-79 300.1 198 70.2
Os05g0214400 Oryza sativa ssp. japonica HOM05D006525 ORTHO05D007845 2.2e-79 299.7 204 70.1
Carub.0007s3351 Capsella rubella HOM05D006525 ORTHO05D007845 3.7e-79 298.9 204 72.1
unitig_88.g27636 Utricularia gibba HOM05D006525 ORTHO05D007845 4.8e-79 298.5 200 71.5
CARHR212710 Cardamine hirsuta HOM05D006525 ORTHO05D007845 1.4e-78 297.0 203 69.5
ECA240G1071 Erigeron canadensis HOM05D006525 ORTHO05D007845 1.4e-78 297.0 203 72.4
CAN.G532.106 Capsicum annuum HOM05D006525 ORTHO05D007845 1.8e-78 296.6 200 73.5
MBI07_g34229_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.8e-78 296.6 202 71.8
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 4.1e-78 295.4 201 69.7
AT5G41850 Arabidopsis thaliana HOM05D006525 ORTHO05D007845 1.2e-77 293.9 201 70.1
HanXRQChr17g0535171 Helianthus annuus HOM05D006525 ORTHO05D007845 1.6e-77 293.5 201 70.1
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 2.7e-77 292.7 217 67.7
arahy.Tifrunner.gnm1.ann1.56CREW Arachis hypogaea HOM05D006525 ORTHO05D007845 7.7e-77 291.2 219 68.5
AL7G47380 Arabidopsis lyrata HOM05D006525 ORTHO05D007845 2.9e-76 289.3 201 69.2
HPP92_000617 Vanilla planifolia HOM05D006525 ORTHO05D007845 3.3e-75 285.8 200 68.0
PSO384G4490 Papaver somniferum HOM05D006525 ORTHO05D007845 4.2e-75 285.4 201 67.7
SGA_v2.0_scaffold96G28973 Striga asiatica HOM05D006525 ORTHO05D007845 2.8e-74 282.7 277 56.7
Zm00001eb283820 Zea mays HOM05D006525 ORTHO05D007845 3.6e-74 282.3 201 67.7
Lsat_1_v5_gn_3_10281 Lactuca sativa HOM05D006525 ORTHO05D007845 1.4e-73 280.4 199 68.8
MBI07_g34230_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.5e-72 276.9 180 75.6
PSO339G1283 Papaver somniferum HOM05D006525 ORTHO05D007845 3.7e-71 272.3 214 63.1
SMO290G0001 Selaginella moellendorffii HOM05D006525 ORTHO05D007845 1.1e-70 270.8 201 64.7
Thhalv10028271m.g Eutrema salsugineum HOM05D006525 ORTHO05D007845 3.2e-70 269.2 199 65.8
AUR62010826 Chenopodium quinoa HOM05D006525 ORTHO05D007845 1.6e-69 266.9 202 66.3
Lj2A170G33 Lonicera japonica HOM05D006525 ORTHO05D007845 7.8e-69 264.6 161 79.5
Lsat_1_v5_gn_6_84361 Lactuca sativa HOM05D006525 ORTHO05D007845 1.2e-66 257.3 182 69.2
Nitab4.5_0010144g0010 Nicotiana tabacum HOM05D006525 ORTHO05D007845 1.6e-66 256.9 173 75.1
HanXRQChr06g0166551 Helianthus annuus HOM05D006525 ORTHO05D007845 4.7e-66 255.4 198 63.6
Nitab4.5_0000223g0360 Nicotiana tabacum HOM05D006525 ORTHO05D007845 4.0e-65 252.3 173 74.0
Nn3g19049 Nelumbo nucifera HOM05D006525 ORTHO05D007845 2.8e-58 229.6 132 83.3
CSS0025848 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 1.1e-57 227.6 161 86.3
CBR_g29721 Chara braunii HOM05D006525 ORTHO05D007845 9.8e-56 221.1 205 50.2
TPR.G3436 Trifolium pratense HOM05D006525 ORTHO05D007845 1.1e-54 217.6 136 75.0
MBI07_g27263_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.5e-48 197.2 181 60.2
Pp3c22_1320 Physcomitrium patens HOM05D006525 ORTHO05D007845 2.0e-48 196.8 132 68.2
CSS0015265 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 2.4e-46 189.9 94 100.0
FvH4_5g04410 Fragaria vesca HOM05D006525 ORTHO05D007845 2.4e-46 189.9 110 80.9
Hma1.2p1_0359F.1_g135320 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 4.3e-43 179.1 113 78.8
Sc22g0005060 Simmondsia chinensis HOM05D006525 ORTHO05D007845 3.6e-42 176.0 107 77.6
Glyma.05G216200 Glycine max HOM05D006525 ORTHO05D007845 1.9e-38 163.7 113 72.6
Hma1.2p1_0359F.1_g135300 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 1.3e-36 157.5 86 83.7
Solyc08g082150.2 Solanum lycopersicum HOM05D006525 ORTHO05D007845 1.8e-33 147.1 86 79.1
SEGI_26681 Sequoiadendron giganteum HOM05D006525 ORTHO05D007845 8.4e-31 138.3 90 76.7
BcaNung06853 Brassica carinata HOM05D006525 ORTHO05D007845 2.7e-29 133.3 84 73.8
TPR.G20444 Trifolium pratense HOM05D006525 ORTHO05D007845 5.6e-27 125.6 84 75.0
Peaxi162Scf00074g01026 Petunia axillaris HOM05D006525 ORTHO05D007845 1.6e-26 124.0 90 67.8
Pp3c22_17300 Physcomitrium patens HOM05D006525 ORTHO05D007845 2.4e-25 120.2 113 56.6
ATR0589G090 Amborella trichopoda HOM05D006525 ORTHO05D007845 6.9e-25 118.6 88 65.9
MD06G1104500 Malus domestica HOM05D006525 ORTHO05D007845 6.9e-25 118.6 121 55.4
MD06G1104600 Malus domestica HOM05D006525 ORTHO05D007845 4.2e-22 109.4 70 75.7
AagrBONN_evm.TU.Sc2ySwM_368.643 Anthoceros agrestis HOM05D006525 ORTHO05D007845 3.5e-21 106.3 79 63.3
HanXRQChr03g0061741 Helianthus annuus HOM05D006525 ORTHO05D007845 9.6e-19 98.2 65 70.8
Sc22g0005070 Simmondsia chinensis HOM05D006525 ORTHO05D007845 1.8e-17 94.0 68 64.7
PGSC0003DMG400026824 Solanum tuberosum HOM05D006525 ORTHO05D007845 1.3e-15 87.8 70 64.3
Lalb_Chr09g0332581 Lupinus albus HOM05D006525 ORTHO05D007845 5.7e-11 72.4 52 71.2
Nitab4.5_0000324g0230 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-08 64.3 149 33.6
Nitab4.5_0003890g0030 Nicotiana tabacum HOM05D004698 ORTHO05D005699 1.5e-08 64.3 149 33.6
SalBow1G8278 Salvia bowleyana HOM05D004698 ORTHO05D005699 3.2e-06 56.6 179 29.6
PGSC0003DMG400033344 Solanum tuberosum HOM05D004698 ORTHO05D005699 4.2e-06 56.2 149 30.9
Migut.K00041 Erythranthe guttata HOM05D004698 ORTHO05D005699 9.3e-06 55.1 179 29.1


User provided reference genes

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