Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006962 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 4.1e-24 114.0 61 100.0
CSS0012709 Camellia sinensis var. sinensis HOM05D003845 ORTHO05D004161 1.0e-14 82.8 42 100.0
vmacro05567 Vaccinium macrocarpon HOM05D003845 ORTHO05D004161 1.3e-14 82.4 44 93.2
GSVIVG01031064001 Vitis vinifera HOM05D003845 ORTHO05D004161 1.7e-14 82.0 44 88.6
Dinv33933 Davidia involucrata HOM05D003845 ORTHO05D004161 5.0e-14 80.5 42 95.2
Dinv34837 Davidia involucrata HOM05D003845 ORTHO05D004161 6.5e-14 80.1 42 95.2
Hma1.2p1_0136F.1_g062170 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 8.5e-14 79.7 42 92.9
Hma1.2p1_0136F.1_g062180 Hydrangea macrophylla HOM05D003845 ORTHO05D004161 8.5e-14 79.7 42 92.9
Duzib133G1200 Durio zibethinus HOM05D003845 ORTHO05D004161 1.9e-13 78.6 42 92.9
Thecc.04G136100 Theobroma cacao HOM05D003845 ORTHO05D004161 1.9e-13 78.6 42 92.9
Sc23g0006880 Simmondsia chinensis HOM05D003845 ORTHO05D004161 2.5e-13 78.2 42 88.1
FAN14G4373 Fragaria x ananassa HOM05D003845 ORTHO05D004161 3.2e-13 77.8 51 74.5
QL02p051715 Quercus lobata HOM05D003845 ORTHO05D004161 3.2e-13 77.8 47 87.2
FAN02G2813 Fragaria x ananassa HOM05D003845 ORTHO05D004161 4.2e-13 77.4 42 88.1
Manes.02G067500 Manihot esculenta HOM05D003845 ORTHO05D004161 4.2e-13 77.4 42 90.5
RcHm_v2.0_Chr2g0162941 Rosa chinensis HOM05D003845 ORTHO05D004161 4.2e-13 77.4 42 88.1
Atru.chr8.887 Acer truncatum HOM05D003845 ORTHO05D004161 7.2e-13 76.6 42 88.1
Prupe.7G002300 Prunus persica HOM05D003845 ORTHO05D004161 7.2e-13 76.6 42 88.1
FvH4_6g45230 Fragaria vesca HOM05D003845 ORTHO05D004161 9.4e-13 76.3 42 85.7
CiPaw.04G040900 Carya illinoinensis HOM05D003845 ORTHO05D004161 1.2e-12 75.9 42 90.5
Zm00001eb382690 Zea mays HOM05D003845 ORTHO05D004161 1.2e-12 75.9 44 86.4
MD12G1002400 Malus domestica HOM05D003845 ORTHO05D004161 1.6e-12 75.5 42 85.7
MD14G1001900 Malus domestica HOM05D003845 ORTHO05D004161 1.6e-12 75.5 42 85.7
Actinidia36313 Actinidia chinensis HOM05D003845 ORTHO05D004161 2.1e-12 75.1 42 90.5
THA.LOC104805559 Tarenaya hassleriana HOM05D003845 ORTHO05D004161 2.1e-12 75.1 42 88.1
Aa31LG2G3530 Aethionema arabicum HOM05D003845 ORTHO05D004161 2.7e-12 74.7 42 85.7
Aqoxy3G03940 Aquilegia oxysepala HOM05D003845 ORTHO05D004161 2.7e-12 74.7 42 85.7
AUR62014525 Chenopodium quinoa HOM05D003845 ORTHO05D004161 4.6e-12 73.9 42 88.1
ECA232G1957 Erigeron canadensis HOM05D003845 ORTHO05D004161 4.6e-12 73.9 42 81.0
TAR629G0674 Trochodendron aralioides HOM05D003845 ORTHO05D004161 4.6e-12 73.9 42 85.7
PSO063G7466 Papaver somniferum HOM05D003845 ORTHO05D004161 6.1e-12 73.6 42 83.3
Hund16134 Selenicereus undatus HOM05D003845 ORTHO05D004161 6.1e-12 73.6 42 83.3
TWI53G0876 Tripterygium wilfordii HOM05D003845 ORTHO05D004161 6.1e-12 73.6 42 83.3
HanXRQChr14g0438731 Helianthus annuus HOM05D003845 ORTHO05D004161 7.9e-12 73.2 42 81.0
Lsat_1_v5_gn_4_153700 Lactuca sativa HOM05D003845 ORTHO05D004161 1.0e-11 72.8 42 81.0
Nitab4.5_0001569g0050 Nicotiana tabacum HOM05D003845 ORTHO05D004161 1.0e-11 72.8 42 78.6
Os06g0505302 Oryza sativa ssp. japonica HOM05D003845 ORTHO05D004161 1.0e-11 72.8 44 81.8
Potri.004G101250 Populus trichocarpa HOM05D003845 ORTHO05D004161 1.0e-11 72.8 42 83.3
Ah.10g037590 Amaranthus hybridus HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 83.3
arahy.Tifrunner.gnm1.ann1.4V7WUF Arachis hypogaea HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 81.0
arahy.Tifrunner.gnm1.ann1.UJVA95 Arachis hypogaea HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 81.0
EL10Ac2g04592 Beta vulgaris HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 85.7
EL10Ac2g04610 Beta vulgaris HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 85.7
A07p33800 Brassica napus HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 83.3
BraA07t31006Z Brassica rapa HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 83.3
Ca_04078_v3 Cicer arietinum L. HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 83.3
Eucgr.F02484 Eucalyptus grandis HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 83.3
Glyma.18G297900 Glycine max HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 83.3
Gohir.A07G071701 Gossypium hirsutum HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 85.7
Gohir.D07G076100 Gossypium hirsutum HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 85.7
Gorai.001G080300 Gossypium raimondii HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 85.7
Lj1g0009000 Lotus japonicus HOM05D003845 ORTHO05D004161 1.4e-11 72.4 42 83.3
AUR62008978 Chenopodium quinoa HOM05D003845 ORTHO05D004161 1.8e-11 72.0 42 85.7
Thhalv10017993m.g Eutrema salsugineum HOM05D003845 ORTHO05D004161 1.8e-11 72.0 42 83.3
Nn4g23790 Nelumbo nucifera HOM05D003845 ORTHO05D004161 1.8e-11 72.0 42 83.3
PSO782G1231 Papaver somniferum HOM05D003845 ORTHO05D004161 1.8e-11 72.0 42 81.0
Sp5g22090 Schrenkiella parvula HOM05D003845 ORTHO05D004161 1.8e-11 72.0 42 83.3
Sopen02g030490 Solanum pennellii HOM05D003845 ORTHO05D004161 1.8e-11 72.0 42 78.6
AT1G67140 Arabidopsis thaliana HOM05D003845 ORTHO05D004161 2.3e-11 71.6 42 83.3
Carub.0002s1343 Capsella rubella HOM05D003845 ORTHO05D004161 2.3e-11 71.6 42 83.3
SGA_v2.0_scaffold33G13453 Striga asiatica HOM05D003845 ORTHO05D004161 2.3e-11 71.6 44 81.8
CAN.G625.4 Capsicum annuum HOM05D003845 ORTHO05D004161 3.0e-11 71.2 42 78.6
C06p43130 Brassica napus HOM05D003845 ORTHO05D004161 3.9e-11 70.9 42 81.0
BolC6t39126H Brassica oleracea HOM05D003845 ORTHO05D004161 3.9e-11 70.9 42 81.0
MELO3C022095.2 Cucumis melo HOM05D003845 ORTHO05D004161 3.9e-11 70.9 44 75.0
CsaV3_5G039200 Cucumis sativus L. HOM05D003845 ORTHO05D004161 3.9e-11 70.9 44 75.0
SalBow3G0178 Salvia bowleyana HOM05D003845 ORTHO05D004161 3.9e-11 70.9 44 81.8
Sed0012635 Sechium edule HOM05D003845 ORTHO05D004161 3.9e-11 70.9 44 75.0
VMungo1383G2489 Vigna mungo HOM05D003845 ORTHO05D004161 3.9e-11 70.9 42 81.0
CANSAT64G2814 Cannabis sativa HOM05D003845 ORTHO05D004161 5.1e-11 70.5 42 81.0
Solyc02g085810.3 Solanum lycopersicum HOM05D003845 ORTHO05D004161 5.1e-11 70.5 42 76.2
Medtr7g406950 Medicago truncatula HOM05D003845 ORTHO05D004161 6.7e-11 70.1 42 81.0
Phvul.008G004700 Phaseolus vulgaris HOM05D003845 ORTHO05D004161 6.7e-11 70.1 42 81.0
ATR0564G046 Amborella trichopoda HOM05D003845 ORTHO05D004161 8.8e-11 69.7 42 81.0
AL2G25520 Arabidopsis lyrata HOM05D003845 ORTHO05D004161 1.1e-10 69.3 42 78.6
Lj2C445G6 Lonicera japonica HOM05D003845 ORTHO05D004161 1.1e-10 69.3 42 81.0
Lalb_Chr21g0317871 Lupinus albus HOM05D003845 ORTHO05D004161 1.1e-10 69.3 42 78.6
Cc07_g08900 Coffea canephora HOM05D003845 ORTHO05D004161 1.5e-10 68.9 42 81.0
Peaxi162Scf00814g00242 Petunia axillaris HOM05D003845 ORTHO05D004161 1.5e-10 68.9 48 64.6
PGR004G1392 Punica granatum HOM05D003845 ORTHO05D004161 1.5e-10 68.9 42 76.2
CDE02G0049 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 2.6e-10 68.2 42 81.0
Oeu052985.1 Olea europaea HOM05D003845 ORTHO05D004161 5.7e-10 67.0 42 83.3
Migut.H00208 Erythranthe guttata HOM05D003845 ORTHO05D004161 1.3e-09 65.9 42 78.6
HPP92_003934 Vanilla planifolia HOM05D003845 ORTHO05D004161 3.7e-09 64.3 39 82.1
HPP92_003935 Vanilla planifolia HOM05D003845 ORTHO05D004161 3.7e-09 64.3 39 82.1
Lsat_1_v5_gn_4_153641 Lactuca sativa HOM05D003845 ORTHO05D004161 4.8e-09 63.9 42 71.4
Lsat_1_v5_gn_7_94541 Lactuca sativa HOM05D003845 ORTHO05D004161 4.1e-08 60.8 35 80.0
Pp3c15_3000 Physcomitrium patens HOM05D003845 ORTHO05D004161 6.9e-08 60.1 42 73.8
unitig_899.g14510 Utricularia gibba HOM05D003845 ORTHO05D004161 9.1e-08 59.7 45 68.9
AagrBONN_evm.TU.Sc2ySwM_368.2329__2330 Anthoceros agrestis HOM05D003845 ORTHO05D004161 3.8e-06 54.3 42 64.3


User provided reference genes

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