Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 0.0e+00 2120.9 1066 100.0
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 0.0e+00 1806.6 1039 91.1
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 7.3e-254 881.3 1005 55.5
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 5.2e-252 875.2 966 55.2
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 4.8e-229 798.9 1128 47.3
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 4.8e-229 798.9 1128 47.3
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 4.8e-229 798.9 1128 47.3
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 4.5e-219 765.8 1042 49.0
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 2.6e-206 723.4 1046 47.7
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 1.6e-184 651.0 992 45.3
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 4.3e-169 599.7 709 51.3
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 6.6e-154 549.3 1027 40.6
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 8.1e-152 542.3 665 51.6
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.4e-143 515.0 1128 38.5
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 1.4e-132 478.4 1048 38.3
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 4.8e-128 463.4 983 39.6
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 5.3e-127 459.9 965 39.0
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 3.9e-122 443.7 958 37.4
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 1.6e-120 438.3 1093 37.1
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 6.0e-107 393.3 1181 34.0
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 2.3e-106 391.3 1186 33.6
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 4.1e-103 380.6 1027 36.2
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 6.9e-103 379.8 1047 33.9
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 7.7e-102 376.3 971 36.1
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 1.6e-99 368.6 1029 34.6
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 6.5e-93 346.7 956 35.0
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 2.1e-91 341.7 1100 33.5
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 4.4e-89 334.0 973 32.8
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 9.7e-89 332.8 947 31.6
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 6.3e-88 330.1 1024 31.7
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 1.4e-87 328.9 1087 32.9
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 2.4e-87 328.2 1053 32.7
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 2.5e-84 318.2 1108 31.0
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 4.2e-84 317.4 1049 32.0
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 6.1e-83 313.5 925 33.1
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 6.1e-83 313.5 914 32.9
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.4e-82 312.4 928 33.2
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.2e-82 310.5 928 32.9
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 8.8e-82 309.7 1085 32.5
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 7.4e-81 306.6 1218 30.3
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 6.3e-80 303.5 934 31.9
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.4e-79 302.4 931 31.7
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 1.6e-78 298.9 660 37.1
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.3e-77 295.8 680 36.0
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.7e-77 295.4 935 32.0
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 1.2e-75 289.3 974 32.0
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.6e-75 288.9 665 36.5
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 4.7e-75 287.3 652 35.7
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.7e-75 287.3 1050 32.0
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 6.1e-75 287.0 643 36.2
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.8e-74 285.4 680 35.6
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.0e-69 269.6 644 34.5
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 2.9e-69 268.1 1054 31.1
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.5e-68 265.8 679 34.2
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.5e-68 265.8 1024 29.9
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.5e-68 265.8 641 36.5
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 7.2e-68 263.5 819 30.6
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 2.1e-67 261.9 644 33.7
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 1.7e-64 252.3 447 43.6
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 4.5e-62 244.2 495 41.0
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 5.9e-62 243.8 533 36.2
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 1.3e-61 242.7 746 32.0
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 2.0e-57 228.8 931 29.9
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 3.4e-57 228.0 619 34.6
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 5.7e-57 227.3 934 30.8
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 1.7e-56 225.7 747 32.5
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.2e-56 225.3 726 32.5
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 3.7e-56 224.6 619 34.1
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 4.9e-56 224.2 595 37.5
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 8.3e-56 223.4 751 32.1
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 1.4e-55 222.6 751 32.1
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.8e-55 222.2 573 34.4
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 4.5e-54 217.6 660 31.5
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.0e-53 216.5 758 35.0
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 3.3e-52 211.5 627 34.1
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 7.3e-52 210.3 610 34.3
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 8.9e-50 203.4 642 30.8
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 1.1e-47 196.4 588 31.8
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 4.1e-47 194.5 530 34.9
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 1.0e-45 189.9 542 33.0
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 5.6e-44 184.1 929 28.7
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 9.5e-44 183.3 550 33.1
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 2.8e-43 181.8 562 33.3
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 5.2e-42 177.6 556 31.3
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 1.7e-40 172.6 469 35.0
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 2.4e-39 168.7 559 34.3
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 1.3e-37 162.9 621 32.4
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 1.7e-37 162.5 339 36.0
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.3e-37 162.2 302 41.1
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.7e-29 136.0 347 34.9
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 7.3e-28 130.6 577 28.9
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 1.5e-25 122.9 297 33.0
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.1e-23 116.7 462 28.8
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 3.2e-23 115.2 121 47.1
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 9.2e-23 113.6 127 50.4
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 1.3e-21 109.8 284 35.2
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 3.6e-19 101.7 699 24.5
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 2.4e-18 99.0 974 23.9
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 2.1e-14 85.9 263 30.0
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 6.0e-14 84.3 614 25.7
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.9e-12 79.3 216 34.7
Psat0s560g0120 Pisum sativum HOM05D005457 ORTHO05D006350 4.5e-09 68.2 191 31.9
Psat2g109120 Pisum sativum HOM05D005457 ORTHO05D006350 1.7e-08 66.2 224 29.0
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 2.2e-08 65.9 318 27.7
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 5.4e-07 61.2 116 34.5
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 4.6e-06 58.2 107 35.5


User provided reference genes

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