Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 5.1e-282 973.8 501 100.0
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 3.7e-216 755.0 480 80.6
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 7.0e-199 697.6 503 72.4
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 7.8e-198 694.1 501 74.3
Dinv02128 Davidia involucrata HOM05D000452 ORTHO05D005748 3.9e-197 691.8 501 72.5
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 5.0e-197 691.4 514 71.0
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 4.7e-195 684.9 490 72.9
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 4.4e-193 678.3 497 71.0
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 8.1e-187 657.5 501 67.1
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 4.4e-185 651.7 493 67.3
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.7e-184 649.8 494 68.0
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.7e-181 639.8 494 66.6
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 6.6e-181 637.9 504 65.5
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.9e-180 636.3 501 66.7
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.9e-180 636.3 496 66.5
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 3.3e-180 635.6 510 64.7
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 7.3e-180 634.4 501 66.7
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 9.6e-180 634.0 502 66.5
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 9.6e-180 634.0 504 65.7
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 8.1e-179 630.9 502 66.1
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.1e-178 630.6 501 66.5
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 6.9e-178 627.9 502 65.3
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 6.9e-178 627.9 440 70.9
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 6.9e-178 627.9 502 66.3
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 6.9e-178 627.9 499 64.7
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 1.2e-177 627.1 502 65.3
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 7.6e-177 624.4 499 64.9
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 9.9e-177 624.0 502 64.1
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 2.2e-176 622.9 494 65.0
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 3.8e-176 622.1 501 64.1
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 6.4e-176 621.3 499 64.7
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.4e-175 620.2 504 64.5
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.9e-175 619.8 503 64.2
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 7.1e-175 617.8 504 64.3
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 2.1e-174 616.3 504 64.1
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 6.0e-174 614.8 501 64.3
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 6.0e-174 614.8 502 64.3
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 1.7e-173 613.2 500 64.4
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 2.3e-173 612.8 495 65.1
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 7.3e-172 607.8 480 66.7
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 4.8e-171 605.1 448 68.5
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 8.1e-171 604.4 500 63.8
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.1e-170 604.0 501 63.1
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 1.3e-168 597.0 500 63.4
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.3e-168 597.0 590 54.6
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 1.1e-167 594.0 500 64.0
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 4.2e-167 592.0 448 67.6
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 1.2e-166 590.5 497 62.0
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 1.6e-166 590.1 501 63.5
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 4.6e-166 588.6 498 63.9
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 1.0e-165 587.4 497 61.4
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 2.3e-165 586.3 500 61.6
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 2.3e-165 586.3 502 62.2
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 3.0e-165 585.9 500 62.6
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.5e-164 583.6 513 60.6
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.9e-164 583.2 513 60.6
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 3.3e-164 582.4 472 63.1
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 2.8e-163 579.3 494 61.3
arahy.Tifrunner.gnm1.ann1.WEDN33 Arachis hypogaea HOM05D000452 ORTHO05D005748 6.9e-162 574.7 511 60.9
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 1.2e-161 573.9 436 65.6
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 1.2e-161 573.9 491 61.7
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 4.5e-161 572.0 452 65.3
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 1.7e-160 570.1 452 64.6
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 1.2e-158 563.9 482 61.6
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.6e-158 563.5 463 62.9
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 3.5e-158 562.4 450 62.9
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 7.9e-158 561.2 499 58.3
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 1.0e-157 560.8 501 60.1
Oeu037301.1 Olea europaea HOM05D000452 ORTHO05D005748 8.2e-155 551.2 509 58.2
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 5.8e-153 545.0 435 66.2
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 5.8e-153 545.0 453 64.2
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 7.6e-153 544.7 447 64.0
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 7.6e-153 544.7 500 59.6
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 1.7e-152 543.5 503 57.9
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 1.7e-152 543.5 447 63.8
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 1.4e-151 540.4 496 59.7
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 2.5e-151 539.7 496 59.1
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 3.5e-150 535.8 425 65.4
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.1e-148 530.8 484 58.3
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 1.3e-147 527.3 493 56.8
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 1.4e-146 523.9 505 55.8
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 2.6e-145 519.6 448 60.7
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 4.5e-145 518.8 509 55.6
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 4.5e-145 518.8 509 55.6
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.9e-143 513.5 483 56.7
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 4.2e-143 512.3 493 55.8
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 5.5e-143 511.9 502 56.8
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 9.4e-143 511.1 505 55.2
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 3.6e-142 509.2 501 55.7
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 4.6e-142 508.8 513 55.4
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 6.1e-142 508.4 489 56.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 7.9e-142 508.1 502 55.8
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 1.0e-141 507.7 511 54.8
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 2.0e-140 503.4 451 58.5
CsaV3_1G013970 Cucumis sativus L. HOM05D000452 ORTHO05D005748 2.0e-140 503.4 498 54.6
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 3.3e-140 502.7 503 54.1
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 7.4e-140 501.5 510 54.9
CsaV3_1G013990 Cucumis sativus L. HOM05D000452 ORTHO05D005748 8.2e-139 498.0 498 54.0
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 1.4e-138 497.3 500 56.2
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 3.1e-138 496.1 449 57.9
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 4.1e-138 495.7 453 58.1
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 2.9e-136 489.6 503 52.9
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.1e-135 487.6 513 53.2
ATR0048G028 Amborella trichopoda HOM05D000452 ORTHO05D005748 2.5e-135 486.5 428 60.5
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 9.4e-135 484.6 499 53.5
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 1.6e-134 483.8 498 53.4
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 3.7e-131 472.6 501 51.7
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 4.8e-131 472.2 508 51.6
PSO063G2649 Papaver somniferum HOM05D000452 ORTHO05D005748 1.4e-130 470.7 397 63.2
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.8e-130 470.3 489 53.2
RhsimUnG0046400 Rhododendron simsii HOM05D000452 ORTHO05D005748 2.6e-129 466.5 462 59.1
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.3e-128 464.2 503 50.3
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 2.2e-128 463.4 460 54.1
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 5.0e-128 462.2 500 52.8
Lsat_1_v5_gn_2_100281 Lactuca sativa HOM05D000452 ORTHO05D005748 4.7e-126 455.7 370 64.3
MBI07_g26020_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 3.9e-125 452.6 416 59.4
Oeu001281.1 Olea europaea HOM05D000452 ORTHO05D005748 4.4e-124 449.1 387 63.6
Peaxi162Scf00034g00107 Petunia axillaris HOM05D000452 ORTHO05D005748 4.4e-124 449.1 507 51.3
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 2.5e-119 433.3 428 56.5
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 3.6e-118 429.5 321 64.8
Lsat_1_v5_gn_9_37660 Lactuca sativa HOM05D000452 ORTHO05D005748 5.0e-112 409.1 318 64.2
SalBow3G4114 Salvia bowleyana HOM05D000452 ORTHO05D005748 8.6e-104 381.7 339 58.1
CsaV3_1G013980 Cucumis sativus L. HOM05D000452 ORTHO05D005748 1.1e-103 381.3 487 47.0
Hund08167 Selenicereus undatus HOM05D000452 ORTHO05D005748 7.2e-103 378.6 363 57.6
Mapoly0061s0093 Marchantia polymorpha HOM05D000452 ORTHO05D005748 8.0e-102 375.2 450 46.0
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 1.2e-100 371.3 311 61.1
Dinv01781 Davidia involucrata HOM05D000452 ORTHO05D005748 5.0e-96 355.9 201 83.1
Pp3c16_24250 Physcomitrium patens HOM05D000452 ORTHO05D005748 9.2e-90 335.1 488 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3844 Anthoceros agrestis HOM05D000452 ORTHO05D005748 3.9e-88 329.7 509 38.5
DCAR_018802 Daucus carota HOM05D000452 ORTHO05D005748 3.2e-82 310.1 298 54.0
SHI19559 Sapria himalayana HOM05D000452 ORTHO05D005748 1.0e-80 305.1 251 61.4
SMO134G0053 Selaginella moellendorffii HOM05D000452 ORTHO05D005748 2.1e-73 280.8 314 46.2
MBI10_g19822_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.7e-72 277.7 310 51.0
Dinv32733 Davidia involucrata HOM05D000452 ORTHO05D005748 3.9e-72 276.6 239 67.4
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 6.6e-72 275.8 187 70.6
CBR_g51944 Chara braunii HOM05D000452 ORTHO05D005748 1.4e-66 258.1 513 32.7
Lsat_1_v5_gn_5_88800 Lactuca sativa HOM05D000452 ORTHO05D005748 1.5e-55 221.5 196 59.2
TPR.G26833 Trifolium pratense HOM05D000452 ORTHO05D005748 9.3e-50 202.2 131 71.8
Cre01.g022600 Chlamydomonas reinhardtii HOM05D000452 ORTHO05D005748 4.3e-39 166.8 292 35.3
Lsat_1_v5_gn_3_50740 Lactuca sativa HOM05D000452 ORTHO05D005748 1.4e-37 161.8 122 67.2
PRCOL_00001963 Prasinoderma coloniale HOM05D000452 ORTHO05D005748 1.0e-35 155.6 432 27.5
SHI19558 Sapria himalayana HOM05D000452 ORTHO05D000031 9.0e-29 132.5 214 36.4
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 1.0e-27 129.0 87 67.8
MD11G1150200 Malus domestica HOM05D000452 ORTHO05D005748 6.5e-27 126.3 80 67.5
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 3.0e-24 117.5 84 64.3
MBI15_g38533_MAGBIO Magnolia biondii HOM05D000452 ORTHO05D005748 1.4e-21 108.6 129 51.9
HPP92_008615 Vanilla planifolia HOM05D000452 ORTHO05D005748 1.9e-18 98.2 152 42.1
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 1.1e-15 89.0 67 61.2
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.4e-15 87.0 64 62.5
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 2.2e-14 84.7 64 60.9
Lsat_1_v5_gn_4_22460 Lactuca sativa HOM05D000344 ORTHO05D005714 1.1e-13 82.4 57 73.7
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 5.5e-10 70.1 46 67.4
PRCOL_00002815 Prasinoderma coloniale HOM05D000452 ORTHO05D333388 1.4e-08 65.5 181 27.1
Zm00001eb140800 Zea mays HOM05D000433 ORTHO05D000443 2.8e-06 57.8 101 38.6
Zm00001eb318140 Zea mays HOM05D000433 ORTHO05D000443 6.3e-06 56.6 100 38.0


User provided reference genes

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