Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006939 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D004713 4.2e-92 341.3 163 100.0
CSS0040724 Camellia sinensis var. sinensis HOM05D002318 ORTHO05D004713 3.7e-72 275.0 130 99.2
Dinv16705 Davidia involucrata HOM05D002318 ORTHO05D004713 5.7e-65 251.1 130 91.5
Rhsim10G0189100 Rhododendron simsii HOM05D002318 ORTHO05D004713 2.8e-64 248.8 130 90.0
Dinv34115 Davidia involucrata HOM05D002318 ORTHO05D004713 8.2e-64 247.3 130 90.8
Rhsim12G0076600 Rhododendron simsii HOM05D002318 ORTHO05D004713 8.2e-64 247.3 130 88.5
Actinidia12317 Actinidia chinensis HOM05D002318 ORTHO05D004713 3.4e-62 241.9 130 87.7
Lj3A1032T69 Lonicera japonica HOM05D002318 ORTHO05D004713 7.7e-62 240.7 131 88.5
Cc11_g12370 Coffea canephora HOM05D002318 ORTHO05D004713 1.7e-61 239.6 130 87.7
Actinidia33242 Actinidia chinensis HOM05D002318 ORTHO05D004713 2.9e-61 238.8 130 86.2
vmacro01329 Vaccinium macrocarpon HOM05D002318 ORTHO05D004713 2.5e-60 235.7 144 79.2
Migut.L01222 Erythranthe guttata HOM05D002318 ORTHO05D004713 3.2e-60 235.3 130 84.6
MSTRG.7765 Avicennia marina HOM05D002318 ORTHO05D004713 4.2e-60 235.0 130 85.4
Ciclev10033452m.g Citrus clementina HOM05D002318 ORTHO05D004713 4.2e-60 235.0 132 86.4
Oeu050176.1 Olea europaea HOM05D002318 ORTHO05D004713 2.1e-59 232.6 130 84.6
Hma1.2p1_0357F.1_g134430 Hydrangea macrophylla HOM05D002318 ORTHO05D004713 1.0e-58 230.3 130 83.8
Migut.E00062 Erythranthe guttata HOM05D002318 ORTHO05D004713 2.3e-58 229.2 130 82.3
COL.COLO4_27932 Corchorus olitorius HOM05D002318 ORTHO05D004713 3.0e-58 228.8 132 84.8
TWI75G1795 Tripterygium wilfordii HOM05D002318 ORTHO05D004713 3.9e-58 228.4 133 85.7
TWI79G0696 Tripterygium wilfordii HOM05D002318 ORTHO05D004713 3.3e-57 225.3 133 84.2
Duzib251G0769 Durio zibethinus HOM05D002318 ORTHO05D004713 7.4e-57 224.2 132 83.3
Cpa.g.sc1.88 Carica papaya HOM05D002318 ORTHO05D004713 3.7e-56 221.9 133 82.7
HanXRQChr08g0211511 Helianthus annuus HOM05D002318 ORTHO05D004713 3.7e-56 221.9 130 81.5
TAR374G1646 Trochodendron aralioides HOM05D002318 ORTHO05D004713 1.1e-55 220.3 132 81.8
Thecc.02G336400 Theobroma cacao HOM05D002318 ORTHO05D004713 1.8e-55 219.5 132 82.6
CANSAT64G1373 Cannabis sativa HOM05D002318 ORTHO05D004713 2.4e-55 219.2 134 81.3
Nitab4.5_0000334g0250 Nicotiana tabacum HOM05D002318 ORTHO05D004713 3.1e-55 218.8 130 80.0
Potri.010G161500 Populus trichocarpa HOM05D002318 ORTHO05D004713 4.1e-55 218.4 133 81.2
GSVIVG01012178001 Vitis vinifera HOM05D002318 ORTHO05D004713 4.1e-55 218.4 132 78.8
EL10Ac6g14956 Beta vulgaris HOM05D002318 ORTHO05D004713 9.1e-55 217.2 132 77.3
MD16G1064800 Malus domestica HOM05D002318 ORTHO05D004713 9.1e-55 217.2 134 79.1
Peaxi162Scf00314g00033 Petunia axillaris HOM05D002318 ORTHO05D004713 9.1e-55 217.2 130 79.2
Solyc05g012610.3 Solanum lycopersicum HOM05D002318 ORTHO05D004713 9.1e-55 217.2 130 80.8
Sopen05g007440 Solanum pennellii HOM05D002318 ORTHO05D004713 9.1e-55 217.2 130 80.8
Nn4g23328 Nelumbo nucifera HOM05D002318 ORTHO05D004713 1.2e-54 216.9 132 78.8
MD13G1066000 Malus domestica HOM05D002318 ORTHO05D004713 1.5e-54 216.5 134 80.6
Manes.05G107600 Manihot esculenta HOM05D002318 ORTHO05D004713 1.5e-54 216.5 126 83.3
CAN.G1340.12 Capsicum annuum HOM05D002318 ORTHO05D004713 2.0e-54 216.1 130 80.8
FAN07G2980 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.0e-54 216.1 134 79.1
Nitab4.5_0002806g0070 Nicotiana tabacum HOM05D002318 ORTHO05D004713 2.0e-54 216.1 130 79.2
PGSC0003DMG401028328 Solanum tuberosum HOM05D002318 ORTHO05D004713 2.0e-54 216.1 130 80.0
Atru.chr11.1689 Acer truncatum HOM05D002318 ORTHO05D004713 2.6e-54 215.7 132 80.3
Lj2g0006739 Lotus japonicus HOM05D002318 ORTHO05D004713 2.6e-54 215.7 132 78.0
SalBow8G0328 Salvia bowleyana HOM05D002318 ORTHO05D004713 2.6e-54 215.7 130 78.5
MBI17_g16776_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D004713 3.5e-54 215.3 132 78.8
RcHm_v2.0_Chr4g0438861 Rosa chinensis HOM05D002318 ORTHO05D004713 3.5e-54 215.3 134 78.4
Ah.02g126610 Amaranthus hybridus HOM05D002318 ORTHO05D004713 4.5e-54 214.9 133 76.7
Duzib268G0995 Durio zibethinus HOM05D002318 ORTHO05D004713 5.9e-54 214.5 132 81.1
Lsat_1_v5_gn_8_48101 Lactuca sativa HOM05D002318 ORTHO05D004713 5.9e-54 214.5 130 80.0
PGR102G0166 Punica granatum HOM05D002318 ORTHO05D004713 7.7e-54 214.2 132 79.5
Hma1.2p1_0354F.1_g133630 Hydrangea macrophylla HOM05D002318 ORTHO05D004713 1.0e-53 213.8 124 80.6
Potri.008G093100 Populus trichocarpa HOM05D002318 ORTHO05D004713 1.7e-53 213.0 133 80.5
FAN17G0182 Fragaria x ananassa HOM05D002318 ORTHO05D004713 2.2e-53 212.6 134 78.4
CiPaw.05G127900 Carya illinoinensis HOM05D002318 ORTHO05D004713 5.0e-53 211.5 132 78.8
Solyc04g005490.3 Solanum lycopersicum HOM05D002318 ORTHO05D004713 5.0e-53 211.5 130 78.5
SGA_v2.0_scaffold63G21634 Striga asiatica HOM05D002318 ORTHO05D004713 5.0e-53 211.5 130 77.7
QL03p070842 Quercus lobata HOM05D002318 ORTHO05D004713 6.5e-53 211.1 132 78.0
TAR622G0636 Trochodendron aralioides HOM05D002318 ORTHO05D004713 6.5e-53 211.1 132 79.5
Hund05861 Selenicereus undatus HOM05D002318 ORTHO05D004713 8.5e-53 210.7 132 75.0
Prupe.1G282100 Prunus persica HOM05D002318 ORTHO05D004713 1.1e-52 210.3 134 76.9
Lsat_1_v5_gn_3_56320 Lactuca sativa HOM05D002318 ORTHO05D004713 1.5e-52 209.9 130 76.2
PGSC0003DMG400002818 Solanum tuberosum HOM05D002318 ORTHO05D004713 2.5e-52 209.1 130 77.7
Gorai.009G326000 Gossypium raimondii HOM05D002318 ORTHO05D004713 4.2e-52 208.4 132 79.5
VMungo1215G3203 Vigna mungo HOM05D002318 ORTHO05D004713 4.2e-52 208.4 133 75.2
FvH4_4g30490 Fragaria vesca HOM05D002318 ORTHO05D004713 5.5e-52 208.0 134 76.1
FAN12G1805 Fragaria x ananassa HOM05D002318 ORTHO05D004713 5.5e-52 208.0 134 76.1
Gohir.A05G306000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 5.5e-52 208.0 132 78.8
FAN22G1596 Fragaria x ananassa HOM05D002318 ORTHO05D004713 7.2e-52 207.6 134 76.9
Duzib248G0382 Durio zibethinus HOM05D002318 ORTHO05D004713 1.2e-51 206.8 132 78.8
Sopen04g001510 Solanum pennellii HOM05D002318 ORTHO05D004713 1.6e-51 206.5 130 76.2
Lj6A782G109 Lonicera japonica HOM05D002318 ORTHO05D004713 2.1e-51 206.1 130 78.5
Haze_11933 Corylus avellana HOM05D002318 ORTHO05D004713 2.7e-51 205.7 124 82.3
Eucgr.B03179 Eucalyptus grandis HOM05D002318 ORTHO05D004713 3.6e-51 205.3 132 75.8
Gohir.D05G306000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 4.7e-51 204.9 132 78.8
Lalb_Chr17g0340991 Lupinus albus HOM05D002318 ORTHO05D004713 6.1e-51 204.5 131 74.8
Phvul.002G069100 Phaseolus vulgaris HOM05D002318 ORTHO05D004713 1.0e-50 203.8 133 73.7
Ca_25952_v3 Cicer arietinum L. HOM05D002318 ORTHO05D004713 1.4e-50 203.4 132 75.8
Oeu021098.4 Olea europaea HOM05D002318 ORTHO05D004713 1.4e-50 203.4 156 66.0
Sabra08G0069900 Salix brachista HOM05D002318 ORTHO05D004713 1.4e-50 203.4 146 71.2
THA.LOC104822900 Tarenaya hassleriana HOM05D002318 ORTHO05D004713 3.0e-50 202.2 136 77.2
AUR62003137 Chenopodium quinoa HOM05D002318 ORTHO05D004713 3.9e-50 201.8 132 71.2
Thhalv10018352m.g Eutrema salsugineum HOM05D002318 ORTHO05D004713 3.9e-50 201.8 133 77.4
Gohir.A13G080000 Gossypium hirsutum HOM05D002318 ORTHO05D004713 3.9e-50 201.8 132 75.0
arahy.Tifrunner.gnm1.ann1.XTY9PQ Arachis hypogaea HOM05D002318 ORTHO05D004713 5.2e-50 201.4 132 74.2
Nitab4.5_0000014g0270 Nicotiana tabacum HOM05D002318 ORTHO05D004713 5.2e-50 201.4 157 66.2
arahy.Tifrunner.gnm1.ann1.R2RWAX Arachis hypogaea HOM05D002318 ORTHO05D004713 6.7e-50 201.1 133 73.7
DCAR_007181 Daucus carota HOM05D002318 ORTHO05D004713 8.8e-50 200.7 133 72.9
Gohir.D13G079800 Gossypium hirsutum HOM05D002318 ORTHO05D004713 2.6e-49 199.1 132 73.5
Gorai.013G091300 Gossypium raimondii HOM05D002318 ORTHO05D004713 2.6e-49 199.1 132 73.5
Sp5g24400 Schrenkiella parvula HOM05D002318 ORTHO05D004713 2.6e-49 199.1 133 75.9
ClCG09G020740 Citrullus lanatus HOM05D002318 ORTHO05D004713 1.3e-48 196.8 135 76.3
Glyma.01G055300 Glycine max HOM05D002318 ORTHO05D004713 1.3e-48 196.8 133 73.7
Glyma.02G113700 Glycine max HOM05D002318 ORTHO05D004713 1.3e-48 196.8 133 73.7
Sed0026215 Sechium edule HOM05D002318 ORTHO05D004713 1.3e-48 196.8 135 74.8
Manes.01G030200 Manihot esculenta HOM05D002318 ORTHO05D004713 2.2e-48 196.1 133 74.4
MELO3C002919.2 Cucumis melo HOM05D002318 ORTHO05D004713 2.8e-48 195.7 135 75.6
CsaV3_5G025630 Cucumis sativus L. HOM05D002318 ORTHO05D004713 2.8e-48 195.7 135 75.6
ECA233G0414 Erigeron canadensis HOM05D002318 ORTHO05D004713 2.8e-48 195.7 132 73.5
AL2G28450 Arabidopsis lyrata HOM05D002318 ORTHO05D004713 4.8e-48 194.9 133 73.7
Psat2g128200 Pisum sativum HOM05D002318 ORTHO05D004713 6.3e-48 194.5 132 72.0
CDE04G3596 Ceratophyllum demersum HOM05D002318 ORTHO05D004713 8.2e-48 194.1 132 73.5
CARHR062230 Cardamine hirsuta HOM05D002318 ORTHO05D004713 1.1e-47 193.7 133 72.2
THA.LOC104808588 Tarenaya hassleriana HOM05D002318 ORTHO05D004713 1.4e-47 193.4 133 74.4
Aqoxy3G03554 Aquilegia oxysepala HOM05D002318 ORTHO05D004713 1.8e-47 193.0 133 75.2
MBI17_g34378_MAGBIO Magnolia biondii HOM05D002318 ORTHO05D004713 1.8e-47 193.0 148 67.6
AUR62007956 Chenopodium quinoa HOM05D002318 ORTHO05D004713 2.4e-47 192.6 155 62.6
Ca_04909_v3 Cicer arietinum L. HOM05D002318 ORTHO05D004713 2.4e-47 192.6 132 72.0
Medtr4g082640 Medicago truncatula HOM05D002318 ORTHO05D004713 2.4e-47 192.6 131 73.3
C06p40580 Brassica napus HOM05D002318 ORTHO05D004713 5.3e-47 191.4 136 73.5
BolC6t39374H Brassica oleracea HOM05D002318 ORTHO05D004713 5.3e-47 191.4 136 73.5
Sed0000373 Sechium edule HOM05D002318 ORTHO05D004713 5.3e-47 191.4 132 72.7
A07p35630 Brassica napus HOM05D002318 ORTHO05D004713 7.0e-47 191.0 136 72.8
BraA07t31151Z Brassica rapa HOM05D002318 ORTHO05D004713 7.0e-47 191.0 136 72.8
Carub.0002s1594 Capsella rubella HOM05D002318 ORTHO05D004713 9.1e-47 190.7 133 72.9
CiPaw.06G090500 Carya illinoinensis HOM05D002318 ORTHO05D004713 9.1e-47 190.7 132 74.2
ATR0111G025 Amborella trichopoda HOM05D002318 ORTHO05D004713 1.2e-46 190.3 133 72.9
BcaB05g24443 Brassica carinata HOM05D002318 ORTHO05D004713 2.0e-46 189.5 136 72.8
Oeu023724.3 Olea europaea HOM05D002318 ORTHO05D004713 5.9e-46 188.0 242 46.7
MSTRG.13441 Avicennia marina HOM05D002318 ORTHO05D004713 7.7e-46 187.6 114 78.9
A02p15840 Brassica napus HOM05D002318 ORTHO05D004713 1.0e-45 187.2 137 71.5
Glyma.07G226333 Glycine max HOM05D002318 ORTHO05D004713 1.0e-45 187.2 133 70.7
Glyma.20G027400 Glycine max HOM05D002318 ORTHO05D004713 1.0e-45 187.2 132 70.5
Lalb_Chr16g0385621 Lupinus albus HOM05D002318 ORTHO05D004713 1.0e-45 187.2 133 70.7
Aa31LG7G8480 Aethionema arabicum HOM05D002318 ORTHO05D004713 1.3e-45 186.8 132 71.2
Medtr5g043560 Medicago truncatula HOM05D002318 ORTHO05D004713 1.7e-45 186.4 132 68.9
AT1G69340 Arabidopsis thaliana HOM05D002318 ORTHO05D004713 2.2e-45 186.0 133 71.4
arahy.Tifrunner.gnm1.ann1.KSM55U Arachis hypogaea HOM05D002318 ORTHO05D004713 1.9e-44 183.0 132 69.7
unitig_26.g10292 Utricularia gibba HOM05D002318 ORTHO05D004713 2.5e-44 182.6 131 70.2
PSO017G1201 Papaver somniferum HOM05D002318 ORTHO05D004713 3.2e-44 182.2 130 76.9
Aa31LG4G11530 Aethionema arabicum HOM05D002318 ORTHO05D004713 4.2e-44 181.8 132 73.5
arahy.Tifrunner.gnm1.ann1.MP45AK Arachis hypogaea HOM05D002318 ORTHO05D004713 4.2e-44 181.8 132 68.9
PSO478G2077 Papaver somniferum HOM05D002318 ORTHO05D004713 4.2e-44 181.8 130 76.2
HPP92_022583 Vanilla planifolia HOM05D002318 ORTHO05D004713 7.2e-44 181.0 133 69.9
VMungo0251G1052 Vigna mungo HOM05D002318 ORTHO05D004713 9.4e-44 180.6 132 68.9
Phvul.002G167900 Phaseolus vulgaris HOM05D002318 ORTHO05D004713 4.7e-43 178.3 132 68.2
HanXRQChr17g0545451 Helianthus annuus HOM05D002318 ORTHO05D004713 1.8e-42 176.4 111 76.6
BcaC03g15074 Brassica carinata HOM05D002318 ORTHO05D004713 2.3e-42 176.0 138 68.1
BolC2t08701H Brassica oleracea HOM05D002318 ORTHO05D004713 2.3e-42 176.0 138 68.1
C02p26300 Brassica napus HOM05D002318 ORTHO05D004713 4.4e-41 171.8 131 67.9
TPR.G34090 Trifolium pratense HOM05D002318 ORTHO05D004713 4.1e-39 165.2 103 73.8
Eucgr.G02463 Eucalyptus grandis HOM05D002318 ORTHO05D004713 5.3e-39 164.9 116 67.2
PSO409G0025 Papaver somniferum HOM05D002318 ORTHO05D004713 1.6e-38 163.3 120 66.7
SEGI_36557 Sequoiadendron giganteum HOM05D002318 ORTHO05D004713 2.7e-38 162.5 135 64.4
Psat7g154320 Pisum sativum HOM05D002318 ORTHO05D004713 5.5e-36 154.8 105 72.4
ECA246G1706 Erigeron canadensis HOM05D002318 ORTHO05D004713 6.1e-35 151.4 135 59.3
Os03g0151100 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D004713 8.0e-35 151.0 119 64.7
Zm00001eb004120 Zea mays HOM05D002318 ORTHO05D004713 8.0e-35 151.0 133 60.2
AagrBONN_evm.TU.Sc2ySwM_117.1854 Anthoceros agrestis HOM05D002318 ORTHO05D004713 3.4e-33 145.6 132 60.6
Os10g0444400 Oryza sativa ssp. japonica HOM05D002318 ORTHO05D004713 3.1e-31 139.0 149 53.0
Zm00001eb047110 Zea mays HOM05D002318 ORTHO05D004713 4.1e-31 138.7 125 60.0
Actinidia31947 Actinidia chinensis HOM05D002318 ORTHO05D004713 1.6e-30 136.7 72 87.5
SMO118G0381 Selaginella moellendorffii HOM05D002318 ORTHO05D004713 1.6e-30 136.7 137 55.5
Pp3c13_22190 Physcomitrium patens HOM05D002318 ORTHO05D004713 3.8e-29 132.1 126 57.1
Pp3c3_20410 Physcomitrium patens HOM05D002318 ORTHO05D004713 1.5e-28 130.2 126 56.3
Mapoly0008s0106 Marchantia polymorpha HOM05D002318 ORTHO05D004713 7.2e-28 127.9 144 52.8
TPR.G21770 Trifolium pratense HOM05D002318 ORTHO05D004713 1.2e-27 127.1 109 65.1
TPR.G24428 Trifolium pratense HOM05D002318 ORTHO05D004713 1.6e-27 126.7 107 66.4
CBR_g6630 Chara braunii HOM05D002318 ORTHO05D004713 1.5e-25 120.2 120 53.3
HanXRQChr10g0307891 Helianthus annuus HOM05D002318 ORTHO05D016670 3.2e-23 112.5 63 81.0
HanXRQChr16g0507981 Helianthus annuus HOM05D002318 ORTHO05D016670 1.2e-22 110.5 63 79.4
CAN.G573.1 Capsicum annuum HOM05D002318 ORTHO05D004713 7.8e-22 107.8 81 65.4
SHI26376 Sapria himalayana HOM05D002318 ORTHO05D000014 1.3e-21 107.1 106 57.5
HanXRQChr12g0362861 Helianthus annuus HOM05D002318 ORTHO05D004713 3.3e-12 75.9 54 68.5


User provided reference genes

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