Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006918 Camellia sinensis var. sinensis HOM05D003936 ORTHO05D004747 1.1e-230 803.1 474 100.0
Actinidia25443 Actinidia chinensis HOM05D003936 ORTHO05D004747 1.7e-157 560.1 476 73.1
Dinv23312 Davidia involucrata HOM05D003936 ORTHO05D004747 2.8e-157 559.3 475 68.6
Actinidia18230 Actinidia chinensis HOM05D003936 ORTHO05D004747 8.0e-152 541.2 475 72.4
TAR636G3155 Trochodendron aralioides HOM05D003936 ORTHO05D004747 5.4e-132 475.3 494 63.6
Duzib212G0318 Durio zibethinus HOM05D003936 ORTHO05D004747 5.2e-127 458.8 477 59.5
QL05p034110 Quercus lobata HOM05D003936 ORTHO05D004747 8.9e-127 458.0 499 62.1
Cfa001907 Carpinus fangiana HOM05D003936 ORTHO05D004747 3.2e-124 449.5 485 63.3
Rhsim08G0208400 Rhododendron simsii HOM05D003936 ORTHO05D004747 4.1e-124 449.1 523 56.0
Cpa.g.sc10.123 Carica papaya HOM05D003936 ORTHO05D004747 7.0e-124 448.4 484 59.3
vmacro17364 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 3.5e-123 446.0 527 58.1
Prupe.3G095300 Prunus persica HOM05D003936 ORTHO05D004747 6.0e-123 445.3 475 59.4
Nn2g12258 Nelumbo nucifera HOM05D003936 ORTHO05D004747 1.3e-122 444.1 492 54.1
MELO3C017854.2 Cucumis melo HOM05D003936 ORTHO05D004747 6.8e-119 431.8 480 55.0
CiPaw.01G252100 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.2e-118 431.0 497 57.7
TWI12G0163 Tripterygium wilfordii HOM05D003936 ORTHO05D004747 8.3e-117 424.9 478 52.7
Oeu029910.1 Olea europaea HOM05D003936 ORTHO05D004747 1.2e-115 421.0 440 57.0
Sed0026159 Sechium edule HOM05D003936 ORTHO05D004747 1.6e-115 420.6 487 54.2
CsaV3_4G001790 Cucumis sativus L. HOM05D003936 ORTHO05D004747 6.0e-115 418.7 481 54.9
Hma1.2p1_0135F.1_g061770 Hydrangea macrophylla HOM05D003936 ORTHO05D004747 2.8e-112 409.8 396 63.1
Thecc.06G036500 Theobroma cacao HOM05D003936 ORTHO05D004747 3.6e-112 409.5 477 53.9
MD17G1219800 Malus domestica HOM05D003936 ORTHO05D004747 2.4e-111 406.8 483 56.3
Eucgr.F03943 Eucalyptus grandis HOM05D003936 ORTHO05D004747 2.4e-108 396.7 490 50.4
Ciclev10025627m.g Citrus clementina HOM05D003936 ORTHO05D004747 5.4e-108 395.6 487 53.4
ClCG07G012350 Citrullus lanatus HOM05D003936 ORTHO05D004747 1.6e-107 394.0 554 49.3
MBI14_g15650_MAGBIO Magnolia biondii HOM05D003936 ORTHO05D004747 2.1e-107 393.7 385 60.3
Potri.003G178800 Populus trichocarpa HOM05D003936 ORTHO05D004747 3.5e-107 392.9 484 57.6
Atru.chr10.2382 Acer truncatum HOM05D003936 ORTHO05D004747 6.0e-107 392.1 478 56.7
Dinv30485 Davidia involucrata HOM05D003936 ORTHO05D004747 3.3e-105 386.3 432 56.5
Gohir.D06G190700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 9.6e-105 384.8 479 50.7
Gorai.010G223800 Gossypium raimondii HOM05D003936 ORTHO05D004747 2.8e-104 383.3 479 50.5
CANSAT11G1020 Cannabis sativa HOM05D003936 ORTHO05D004747 3.4e-102 376.3 476 52.9
Nitab4.5_0000114g0150 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.1e-100 371.3 484 51.0
Sed0007390 Sechium edule HOM05D003936 ORTHO05D004747 1.1e-100 371.3 481 52.0
ATR0584G049 Amborella trichopoda HOM05D003936 ORTHO05D004747 1.2e-99 367.9 408 54.7
Lalb_Chr25g0279171 Lupinus albus HOM05D003936 ORTHO05D004747 1.6e-99 367.5 388 54.9
vmacro19035 Vaccinium macrocarpon HOM05D003936 ORTHO05D004747 2.7e-99 366.7 360 60.0
Gohir.A06G183700 Gossypium hirsutum HOM05D003936 ORTHO05D004747 3.5e-99 366.3 477 49.1
MSTRG.11168 Avicennia marina HOM05D003936 ORTHO05D004747 6.0e-99 365.5 413 53.5
Sopen08g002790 Solanum pennellii HOM05D003936 ORTHO05D004747 1.7e-98 364.0 374 55.9
Sabra03G0131100 Salix brachista HOM05D003936 ORTHO05D004747 6.2e-96 355.5 527 50.9
arahy.Tifrunner.gnm1.ann1.17KRJ7 Arachis hypogaea HOM05D003936 ORTHO05D004747 1.1e-95 354.8 399 55.1
arahy.Tifrunner.gnm1.ann1.6RSI2J Arachis hypogaea HOM05D003936 ORTHO05D004747 1.1e-95 354.8 399 55.1
PGR102G1525 Punica granatum HOM05D003936 ORTHO05D004747 2.4e-95 353.6 481 55.9
COL.COLO4_11826 Corchorus olitorius HOM05D003936 ORTHO05D004747 3.1e-95 353.2 646 43.2
THA.LOC104812450 Tarenaya hassleriana HOM05D003936 ORTHO05D004747 4.0e-95 352.8 415 51.8
Lj2A141T58 Lonicera japonica HOM05D003936 ORTHO05D004747 2.6e-94 350.1 409 54.5
Lj9A496T67 Lonicera japonica HOM05D003936 ORTHO05D004747 9.9e-94 348.2 376 57.7
CDE02G1505 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 1.7e-93 347.4 402 53.5
RcHm_v2.0_Chr2g0133511 Rosa chinensis HOM05D003936 ORTHO05D004747 2.2e-93 347.1 473 50.3
unitig_27.g24954 Utricularia gibba HOM05D003936 ORTHO05D004747 4.2e-92 342.8 399 53.1
Solyc08g006840.3 Solanum lycopersicum HOM05D003936 ORTHO05D004747 5.4e-92 342.4 301 62.1
FvH4_6g28960 Fragaria vesca HOM05D003936 ORTHO05D004747 1.8e-90 337.4 467 51.8
PSO210G7358 Papaver somniferum HOM05D003936 ORTHO05D004747 3.0e-90 336.7 359 55.7
FAN14G5707 Fragaria x ananassa HOM05D003936 ORTHO05D004747 8.7e-90 335.1 478 51.0
PSO478G0782 Papaver somniferum HOM05D003936 ORTHO05D004747 2.5e-89 333.6 356 55.6
Manes.04G106400 Manihot esculenta HOM05D003936 ORTHO05D004747 5.6e-89 332.4 456 49.1
FAN02G3242 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.6e-88 330.9 478 49.8
Migut.I00724 Erythranthe guttata HOM05D003936 ORTHO05D004747 1.1e-87 328.2 405 50.1
PSO782G4560 Papaver somniferum HOM05D003936 ORTHO05D004747 1.8e-87 327.4 359 54.9
Aqoxy7G03521 Aquilegia oxysepala HOM05D003936 ORTHO05D004747 2.0e-86 323.9 493 48.3
Hund00590 Selenicereus undatus HOM05D003936 ORTHO05D004747 2.6e-86 323.6 424 50.7
Thhalv10018593m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 7.6e-86 322.0 483 44.5
FAN05G1488 Fragaria x ananassa HOM05D003936 ORTHO05D004747 7.6e-86 322.0 478 49.4
FAN09G0504 Fragaria x ananassa HOM05D003936 ORTHO05D004747 9.9e-86 321.6 478 49.4
Lj3g0027357 Lotus japonicus HOM05D003936 ORTHO05D004747 1.7e-85 320.9 397 50.1
BraA07t32011Z Brassica rapa HOM05D003936 ORTHO05D004747 2.9e-85 320.1 466 43.3
BolC6t40405H Brassica oleracea HOM05D003936 ORTHO05D004747 3.8e-85 319.7 470 43.6
RcHm_v2.0_Chr4g0407691 Rosa chinensis HOM05D003936 ORTHO05D004747 3.8e-85 319.7 473 49.7
C06p53910 Brassica napus HOM05D003936 ORTHO05D004747 6.4e-85 318.9 472 44.1
Ca_29510_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.4e-84 317.8 408 49.0
A07p45080 Brassica napus HOM05D003936 ORTHO05D004747 3.2e-84 316.6 466 43.3
BolC2t09719H Brassica oleracea HOM05D003936 ORTHO05D004747 3.2e-84 316.6 472 44.5
CARHR073900 Cardamine hirsuta HOM05D003936 ORTHO05D004747 7.1e-84 315.5 487 43.9
BcaC03g15942 Brassica carinata HOM05D003936 ORTHO05D004747 2.1e-83 313.9 471 43.9
Carub.0002s2693 Capsella rubella HOM05D003936 ORTHO05D004747 2.1e-83 313.9 482 47.3
BcaB05g25240 Brassica carinata HOM05D003936 ORTHO05D004747 2.3e-82 310.5 474 44.3
EL10Ac9g21843 Beta vulgaris HOM05D003936 ORTHO05D004747 3.0e-82 310.1 424 46.7
Sp5g35150 Schrenkiella parvula HOM05D003936 ORTHO05D004747 6.7e-82 308.9 475 47.4
C02p37040 Brassica napus HOM05D003936 ORTHO05D004747 1.1e-81 308.1 470 44.0
Aa31LG4G900 Aethionema arabicum HOM05D003936 ORTHO05D004747 1.9e-81 307.4 472 47.2
BraA02t07326Z Brassica rapa HOM05D003936 ORTHO05D004747 1.9e-81 307.4 471 43.7
Sc10g0006130 Simmondsia chinensis HOM05D003936 ORTHO05D004747 2.5e-81 307.0 389 50.1
VMungo0331G1494 Vigna mungo HOM05D003936 ORTHO05D004747 1.6e-80 304.3 379 47.5
AL1G27960 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.2e-80 302.4 484 43.4
A02p23300 Brassica napus HOM05D003936 ORTHO05D004747 6.2e-80 302.4 472 43.4
HPP92_027846 Vanilla planifolia HOM05D003936 ORTHO05D004747 1.1e-79 301.6 403 48.1
CARHR016320 Cardamine hirsuta HOM05D003936 ORTHO05D004747 1.4e-79 301.2 475 44.0
AUR62011450 Chenopodium quinoa HOM05D003936 ORTHO05D004747 9.0e-79 298.5 428 45.8
SGA_v2.0_scaffold5G02746 Striga asiatica HOM05D003936 ORTHO05D004747 1.2e-78 298.1 502 43.2
Peaxi162Scf00045g02127 Petunia axillaris HOM05D003936 ORTHO05D004747 2.6e-78 297.0 350 51.7
AT1G15810 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 3.4e-78 296.6 471 43.3
A06p11880 Brassica napus HOM05D003936 ORTHO05D004747 5.8e-78 295.8 375 50.4
C05p14060 Brassica napus HOM05D003936 ORTHO05D004747 5.8e-78 295.8 375 50.7
Thhalv10007635m.g Eutrema salsugineum HOM05D003936 ORTHO05D004747 5.8e-78 295.8 480 45.8
BraA06t24358Z Brassica rapa HOM05D003936 ORTHO05D004747 1.0e-77 295.0 375 50.4
FAN05G0608 Fragaria x ananassa HOM05D003936 ORTHO05D004747 1.3e-77 294.7 462 49.4
BolC5t30137H Brassica oleracea HOM05D003936 ORTHO05D004747 2.9e-77 293.5 375 50.4
DCAR_016286 Daucus carota HOM05D003936 ORTHO05D004747 2.9e-77 293.5 367 48.8
TPR.G29720 Trifolium pratense HOM05D003936 ORTHO05D004747 3.8e-77 293.1 371 47.7
AL2G40830 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 6.5e-77 292.4 494 43.5
Sp1g14110 Schrenkiella parvula HOM05D003936 ORTHO05D004747 8.4e-77 292.0 483 46.8
AT1G80620 Arabidopsis thaliana HOM05D003936 ORTHO05D004747 1.9e-76 290.8 471 46.5
Carub.0001s1560 Capsella rubella HOM05D003936 ORTHO05D004747 7.1e-76 288.9 478 45.2
Cc04_g04830 Coffea canephora HOM05D003936 ORTHO05D004747 9.3e-76 288.5 260 61.2
Medtr4g009100 Medicago truncatula HOM05D003936 ORTHO05D004747 2.1e-75 287.3 388 45.6
arahy.Tifrunner.gnm1.ann1.ZV9XE5 Arachis hypogaea HOM05D003936 ORTHO05D004747 3.5e-75 286.6 366 47.0
Phvul.010G158900 Phaseolus vulgaris HOM05D003936 ORTHO05D004747 1.8e-74 284.3 395 45.8
AUR62016607 Chenopodium quinoa HOM05D003936 ORTHO05D004747 6.7e-74 282.3 426 44.8
BolC8t52022H Brassica oleracea HOM05D003936 ORTHO05D004747 1.1e-73 281.6 481 42.8
Psat7g258560 Pisum sativum HOM05D003936 ORTHO05D004747 2.5e-73 280.4 390 45.9
Lsat_1_v5_gn_8_9281 Lactuca sativa HOM05D003936 ORTHO05D004747 4.3e-73 279.6 394 47.7
C08p44760 Brassica napus HOM05D003936 ORTHO05D004747 5.7e-73 279.3 479 41.8
Glyma.07G026400 Glycine max HOM05D003936 ORTHO05D004747 5.7e-73 279.3 373 46.1
arahy.Tifrunner.gnm1.ann1.9YJ9LX Arachis hypogaea HOM05D003936 ORTHO05D004747 7.4e-73 278.9 366 47.0
SHI11258 Sapria himalayana HOM05D003936 ORTHO05D004747 1.1e-71 275.0 426 44.4
BcaC07g41479 Brassica carinata HOM05D003936 ORTHO05D004747 1.5e-70 271.2 469 42.0
BraA09t41490Z Brassica rapa HOM05D003936 ORTHO05D004747 4.5e-70 269.6 358 49.4
A09p61160 Brassica napus HOM05D003936 ORTHO05D004747 5.9e-70 269.2 358 49.2
ECA232G5052 Erigeron canadensis HOM05D003936 ORTHO05D004747 1.2e-67 261.5 357 49.9
Nitab4.5_0012293g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 1.2e-67 261.5 301 52.2
MD09G1223400 Malus domestica HOM05D003936 ORTHO05D004747 3.6e-67 260.0 202 68.8
HanXRQChr16g0500031 Helianthus annuus HOM05D003936 ORTHO05D004747 3.0e-66 256.9 319 52.7
GSVIVG01026722001 Vitis vinifera HOM05D003936 ORTHO05D004747 1.1e-63 248.4 142 85.9
Ah.02g127880 Amaranthus hybridus HOM05D003936 ORTHO05D004747 1.2e-59 235.0 407 43.0
Os02g0803200 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 1.2e-59 235.0 376 44.7
RcHm_v2.0_Chr6g0246971 Rosa chinensis HOM05D003936 ORTHO05D004747 3.6e-59 233.4 279 54.8
SalBow6G1756 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.4e-58 231.5 474 37.8
SalBow6G6295 Salvia bowleyana HOM05D003936 ORTHO05D004747 1.4e-58 231.5 474 37.8
Zm00001eb192140 Zea mays HOM05D003936 ORTHO05D004747 2.6e-57 227.3 403 42.2
SEGI_32691 Sequoiadendron giganteum HOM05D003936 ORTHO05D004747 2.2e-48 197.6 315 43.2
Os06g0176150 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.2e-48 195.7 196 56.1
Os06g0177250 Oryza sativa ssp. japonica HOM05D003936 ORTHO05D004747 8.2e-48 195.7 196 56.1
AL1040U10010 Arabidopsis lyrata HOM05D003936 ORTHO05D004747 2.4e-47 194.1 113 85.0
QL08p064447 Quercus lobata HOM05D003936 ORTHO05D004747 2.4e-47 194.1 362 43.9
QL08p064442 Quercus lobata HOM05D003936 ORTHO05D004747 1.9e-44 184.5 102 88.2
CiPaw.02G160600 Carya illinoinensis HOM05D003936 ORTHO05D004747 1.2e-43 181.8 374 41.4
RcHm_v2.0_Chr2g0145231 Rosa chinensis HOM05D003936 ORTHO05D004747 4.1e-39 166.8 116 77.6
CDE09G1350 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.2e-36 156.8 95 82.1
Pp3c1_21620 Physcomitrium patens HOM05D003936 ORTHO05D004747 5.7e-33 146.4 131 51.9
GSVIVG01026738001 Vitis vinifera HOM05D003936 ORTHO05D004747 7.5e-33 146.0 78 93.6
Mapoly0065s0028 Marchantia polymorpha HOM05D003936 ORTHO05D004747 3.7e-32 143.7 131 55.0
CDE09G0364 Ceratophyllum demersum HOM05D003936 ORTHO05D004747 4.1e-31 140.2 247 41.3
Zm00001eb320360 Zea mays HOM05D003936 ORTHO05D004747 1.2e-30 138.7 362 34.3
SMO164G0146 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 3.4e-25 120.6 128 50.8
Ca_25898_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 9.2e-23 112.5 276 35.5
BcaB05g25239 Brassica carinata HOM05D003936 ORTHO05D004747 3.5e-22 110.5 64 84.4
Cfa001908 Carpinus fangiana HOM05D003936 ORTHO05D004747 2.5e-20 104.4 235 38.7
PSO832G3729 Papaver somniferum HOM05D003936 ORTHO05D004747 4.3e-20 103.6 67 76.1
CBR_g28520 Chara braunii HOM05D003936 ORTHO05D004747 1.0e-18 99.0 122 46.7
AagrBONN_evm.TU.Sc2ySwM_117.728 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.2e-17 95.5 94 52.1
Nitab4.5_0009138g0020 Nicotiana tabacum HOM05D003936 ORTHO05D004747 4.4e-17 93.6 61 75.4
MCO16G694 Micromonas commoda HOM05D003936 ORTHO05D003028 7.5e-17 92.8 105 46.7
RcHm_v2.0_Chr2g0171141 Rosa chinensis HOM05D003936 ORTHO05D004747 5.4e-15 86.7 62 72.6
AagrBONN_evm.TU.Sc2ySwM_368.3374 Anthoceros agrestis HOM05D003936 ORTHO05D004747 1.2e-14 85.5 95 52.6
Nitab4.5_0012293g0040 Nicotiana tabacum HOM05D003936 ORTHO05D004747 3.1e-10 70.9 37 86.5
PRCOL_00001607 Prasinoderma coloniale HOM05D003936 ORTHO05D004747 7.5e-09 66.2 105 37.1
EL10Ac7g16358 Beta vulgaris HOM05D003327 ORTHO05D004535 1.3e-08 65.5 52 61.5
EL10Ac9g21844 Beta vulgaris HOM05D001651 ORTHO05D000277 2.2e-08 64.7 147 33.3
SMO172G0122 Selaginella moellendorffii HOM05D003936 ORTHO05D004747 4.9e-08 63.5 67 52.2
Cre17.g731250 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 6.4e-08 63.2 105 35.2
EL10Ac8g20467 Beta vulgaris HOM05D003936 ORTHO05D004747 3.2e-07 60.8 152 34.2
Ca_29111_v3 Cicer arietinum L. HOM05D003936 ORTHO05D004747 1.2e-06 58.9 88 44.3
EL10Ac4g08132 Beta vulgaris HOM05D003936 ORTHO05D004747 1.6e-06 58.5 47 59.6
EL10Ac4g08139 Beta vulgaris HOM05D003936 ORTHO05D004747 1.6e-06 58.5 47 59.6
EL10Ac4g09849 Beta vulgaris HOM05D003936 ORTHO05D004747 1.6e-06 58.5 47 59.6
Glyma.08G216000 Glycine max HOM05D003936 ORTHO05D004747 1.6e-06 58.5 35 71.4
Cre06.g264300 Chlamydomonas reinhardtii HOM05D003936 ORTHO05D004747 4.6e-06 57.0 83 39.8


User provided reference genes

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