Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 0.0e+00 1195.6 600 100.0
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.3e-243 844.7 635 69.1
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 4.3e-243 844.7 635 69.1
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.1e-217 760.4 637 64.2
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 8.1e-210 734.2 648 61.7
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.6e-202 709.9 621 61.7
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.2e-197 693.7 570 63.7
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.9e-191 672.5 622 60.6
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 1.1e-190 670.6 638 60.7
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 2.9e-183 646.0 638 59.6
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.7e-175 620.2 712 52.9
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 4.7e-173 612.1 639 57.4
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.2e-163 580.9 651 51.9
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 5.0e-151 538.9 646 49.1
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 4.9e-146 522.3 650 47.8
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 3.2e-137 493.0 636 46.4
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 9.2e-137 491.5 628 47.8
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.9e-134 483.8 665 45.3
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 8.6e-127 458.4 641 45.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 4.3e-126 456.1 681 41.4
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 2.1e-125 453.8 615 46.2
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.0e-124 449.5 714 40.6
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 9.9e-123 444.9 477 52.0
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.7e-122 443.0 625 43.2
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.7e-122 443.0 625 43.2
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-121 441.4 640 44.2
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.9e-121 440.7 477 51.2
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.7e-120 436.8 681 40.2
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 2.5e-118 430.3 638 42.9
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 4.3e-118 429.5 682 40.6
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.6e-117 426.4 624 44.1
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 1.7e-114 417.5 627 43.7
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.4e-113 413.7 639 43.8
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.2e-112 411.4 642 41.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 1.8e-108 397.5 637 40.2
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 3.1e-108 396.7 684 38.3
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 1.1e-105 388.3 646 41.2
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.5e-102 377.9 651 37.9
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 8.4e-98 362.1 666 38.1
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 1.1e-97 361.7 668 38.3
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 3.2e-97 360.1 633 40.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 7.9e-96 355.5 652 37.7
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.5e-94 351.3 656 37.8
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 2.8e-93 347.1 664 37.8
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 9.0e-92 342.0 671 36.2
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 2.2e-90 337.4 655 38.6
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 3.8e-90 336.7 672 36.2
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.4e-89 334.7 656 36.7
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 2.5e-89 334.0 661 37.8
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 4.2e-89 333.2 632 36.6
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.7e-88 330.5 663 36.7
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 6.0e-88 329.3 668 35.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.0e-87 328.6 668 35.6
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 1.8e-87 327.8 654 37.6
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.9e-87 326.6 453 42.2
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 5.1e-87 326.2 679 36.5
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 1.9e-86 324.3 661 36.5
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 4.3e-86 323.2 664 37.2
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 1.3e-85 321.6 667 36.9
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.3e-85 321.6 487 42.3
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 2.4e-84 317.4 687 34.8
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 4.0e-84 316.6 690 35.2
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 5.3e-84 316.2 261 60.2
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 3.4e-83 313.5 664 35.2
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 4.5e-83 313.2 634 36.4
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.7e-82 311.2 628 39.5
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.9e-82 310.5 453 41.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 4.9e-82 309.7 666 36.5
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.4e-81 308.1 689 35.0
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.5e-81 307.4 689 34.7
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 5.5e-81 306.2 456 42.1
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 7.1e-81 305.8 663 35.6
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 1.2e-80 305.1 665 36.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 7.9e-80 302.4 615 35.4
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 1.8e-79 301.2 661 35.4
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 5.1e-79 299.7 641 38.8
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-78 298.5 472 40.9
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 4.3e-78 296.6 633 35.7
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 5.7e-78 296.2 652 33.9
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 5.7e-78 296.2 646 34.4
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 2.2e-77 294.3 457 39.8
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 3.7e-77 293.5 525 37.0
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 6.3e-77 292.7 657 34.2
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 6.3e-77 292.7 525 37.1
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 4.1e-76 290.0 645 34.1
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.1e-76 290.0 519 37.4
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 5.3e-76 289.7 679 34.2
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.2e-75 288.5 681 33.8
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 1.5e-75 288.1 661 34.0
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 5.9e-75 286.2 664 34.9
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.3e-74 285.0 642 34.7
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.3e-74 285.0 655 34.4
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 6.5e-74 282.7 662 33.8
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 5.5e-73 279.6 647 34.2
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 2.7e-72 277.3 658 34.2
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 2.7e-72 277.3 653 33.7
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 3.6e-72 276.9 649 34.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.4e-71 275.0 661 33.0
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.8e-71 274.6 661 33.0
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 5.1e-71 273.1 670 32.8
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 5.1e-71 273.1 649 34.4
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.1e-70 271.9 649 33.6
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.5e-70 271.6 656 33.1
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.5e-70 271.6 668 33.8
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.5e-70 270.8 669 33.5
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 5.7e-70 269.6 617 34.5
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 5.7e-70 269.6 666 33.2
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 9.7e-70 268.9 667 33.7
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 4.8e-69 266.5 665 33.8
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.2e-69 265.8 664 33.0
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.4e-68 265.0 647 32.8
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.1e-68 263.8 659 32.5
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.2e-66 257.7 666 33.0
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 2.2e-66 257.7 583 34.6
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 1.9e-65 254.6 665 30.2
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 5.5e-65 253.1 670 30.7
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 5.5e-65 253.1 676 33.1
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 1.6e-64 251.5 677 32.6
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 4.7e-64 250.0 485 36.9
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 4.7e-64 250.0 649 33.1
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 1.8e-63 248.1 677 31.5
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.8e-63 248.1 658 31.8
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 3.9e-63 246.9 643 33.1
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 6.7e-63 246.1 453 38.2
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.0e-62 244.6 627 32.5
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.4e-60 238.4 430 37.7
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 5.3e-60 236.5 700 30.9
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.6e-59 234.2 639 31.8
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 4.5e-59 233.4 447 38.0
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 4.5e-59 233.4 447 38.0
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 4.5e-59 233.4 438 36.8
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 5.9e-59 233.0 476 37.4
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.5e-57 226.5 656 32.3
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 1.2e-56 225.3 532 34.6
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 1.6e-56 224.9 656 32.5
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 1.6e-56 224.9 667 30.3
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 2.1e-56 224.6 656 31.6
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 4.7e-56 223.4 437 35.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 1.7e-53 214.9 464 34.7
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.3e-50 205.3 267 42.3
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 6.5e-50 203.0 483 36.9
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 8.5e-50 202.6 559 31.8
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 9.4e-49 199.1 368 35.1
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 6.8e-47 193.0 427 30.9
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 3.7e-45 187.2 361 35.7
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 4.8e-45 186.8 223 44.4
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 8.3e-45 186.0 446 32.3
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.0e-44 183.0 171 59.6
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 7.0e-44 183.0 171 59.6
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 5.9e-43 179.9 380 36.6
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.1e-41 175.6 415 33.0
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.6e-40 171.8 497 32.0
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.5e-38 165.2 417 32.6
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 4.4e-38 163.7 367 34.3
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 7.2e-33 146.4 460 27.6
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.8e-32 144.4 487 28.7
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 6.3e-29 133.3 640 27.0
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.6e-24 117.5 442 26.9
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 7.0e-20 103.2 392 28.3
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 1.6e-16 92.0 310 28.1
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 4.6e-11 73.9 289 29.1


User provided reference genes

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