Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006873 Camellia sinensis var. sinensis HOM05D002593 ORTHO05D008082 3.0e-80 302.0 174 100.0
Actinidia20961 Actinidia chinensis HOM05D002593 ORTHO05D008082 3.0e-24 115.9 145 52.4
Dinv33183 Davidia involucrata HOM05D002593 ORTHO05D008082 4.4e-23 112.1 154 50.0
MBI18_g28920_MAGBIO Magnolia biondii HOM05D002593 ORTHO05D008082 7.5e-23 111.3 98 62.2
MSTRG.26210 Avicennia marina HOM05D002593 ORTHO05D008082 6.3e-22 108.2 61 83.6
TAR365G0686 Trochodendron aralioides HOM05D002593 ORTHO05D008082 7.0e-21 104.8 63 79.4
Migut.K00221 Erythranthe guttata HOM05D002593 ORTHO05D008082 9.2e-21 104.4 61 83.6
Atru.chr5.835 Acer truncatum HOM05D002593 ORTHO05D008082 4.5e-20 102.1 103 55.3
Nn1g08395 Nelumbo nucifera HOM05D002593 ORTHO05D008082 5.9e-20 101.7 63 77.8
Sopen01g030550 Solanum pennellii HOM05D002593 ORTHO05D008082 7.8e-20 101.3 64 76.6
FAN23G1996 Fragaria x ananassa HOM05D002593 ORTHO05D008082 1.0e-19 100.9 61 80.3
FAN23G3081 Fragaria x ananassa HOM05D002593 ORTHO05D008082 1.0e-19 100.9 61 80.3
Nitab4.5_0002103g0100 Nicotiana tabacum HOM05D002593 ORTHO05D008082 1.0e-19 100.9 63 77.8
FAN26G3134 Fragaria x ananassa HOM05D002593 ORTHO05D008082 1.7e-19 100.1 61 80.3
Oeu052791.1 Olea europaea HOM05D002593 ORTHO05D008082 2.9e-19 99.4 61 77.0
SalBow1G1534 Salvia bowleyana HOM05D002593 ORTHO05D008082 2.9e-19 99.4 61 78.7
PSO210G3595 Papaver somniferum HOM05D002593 ORTHO05D008082 3.8e-19 99.0 63 76.2
Rhsim10G0121300 Rhododendron simsii HOM05D002593 ORTHO05D008082 3.8e-19 99.0 61 78.7
SGA_v2.0_scaffold12G06079 Striga asiatica HOM05D002593 ORTHO05D008082 3.8e-19 99.0 61 75.4
PGSC0003DMG400000842 Solanum tuberosum HOM05D002593 ORTHO05D008082 5.0e-19 98.6 63 74.6
Eucgr.K00552 Eucalyptus grandis HOM05D002593 ORTHO05D008082 1.5e-18 97.1 142 42.3
Cc01_g21690 Coffea canephora HOM05D002593 ORTHO05D008082 2.5e-18 96.3 61 72.1
DCAR_018238 Daucus carota HOM05D002593 ORTHO05D008082 2.5e-18 96.3 63 73.0
QL09p037436 Quercus lobata HOM05D002593 ORTHO05D008082 2.5e-18 96.3 66 77.3
CAN.G179.25 Capsicum annuum HOM05D002593 ORTHO05D008082 3.3e-18 95.9 60 76.7
Haze_05165 Corylus avellana HOM05D002593 ORTHO05D008082 3.3e-18 95.9 65 73.8
Gorai.004G147900 Gossypium raimondii HOM05D002593 ORTHO05D008082 3.3e-18 95.9 60 75.0
Peaxi162Scf00309g00511 Petunia axillaris HOM05D002593 ORTHO05D008082 3.3e-18 95.9 65 72.3
TWI23G0423 Tripterygium wilfordii HOM05D002593 ORTHO05D008082 3.3e-18 95.9 63 73.0
CiPaw.08G081500 Carya illinoinensis HOM05D002593 ORTHO05D008082 4.3e-18 95.5 63 73.0
Gohir.A08G122100 Gossypium hirsutum HOM05D002593 ORTHO05D008082 4.3e-18 95.5 60 75.0
Gohir.D08G143500 Gossypium hirsutum HOM05D002593 ORTHO05D008082 5.6e-18 95.1 60 73.3
Lsat_1_v5_gn_9_7181 Lactuca sativa HOM05D002593 ORTHO05D008082 5.6e-18 95.1 61 70.5
Prupe.3G000900 Prunus persica HOM05D002593 ORTHO05D008082 5.6e-18 95.1 57 78.9
unitig_0.g2672 Utricularia gibba HOM05D002593 ORTHO05D008082 7.3e-18 94.7 61 73.8
Cfa004926 Carpinus fangiana HOM05D002593 ORTHO05D008082 9.5e-18 94.4 65 72.3
ClCG06G004130 Citrullus lanatus HOM05D002593 ORTHO05D008082 9.5e-18 94.4 64 75.0
Haze_05166 Corylus avellana HOM05D002593 ORTHO05D008082 1.2e-17 94.0 65 72.3
FvH4_1g26070 Fragaria vesca HOM05D002593 ORTHO05D008082 1.2e-17 94.0 57 78.9
FAN19G0602 Fragaria x ananassa HOM05D002593 ORTHO05D008082 1.2e-17 94.0 57 78.9
FAN28G0491 Fragaria x ananassa HOM05D002593 ORTHO05D008082 1.2e-17 94.0 57 78.9
PSO761G0232 Papaver somniferum HOM05D002593 ORTHO05D008082 1.2e-17 94.0 63 71.4
RcHm_v2.0_Chr3g0485541 Rosa chinensis HOM05D002593 ORTHO05D008082 1.2e-17 94.0 57 78.9
Ciclev10021459m.g Citrus clementina HOM05D002593 ORTHO05D008082 2.1e-17 93.2 68 66.2
Cpa.g.sc57.47 Carica papaya HOM05D002593 ORTHO05D008082 2.8e-17 92.8 63 68.3
PGR142G0326 Punica granatum HOM05D002593 ORTHO05D008082 4.7e-17 92.0 71 64.8
Sed0017127 Sechium edule HOM05D002593 ORTHO05D008082 4.7e-17 92.0 64 67.2
TWI14G0813 Tripterygium wilfordii HOM05D002593 ORTHO05D008082 4.7e-17 92.0 63 69.8
arahy.Tifrunner.gnm1.ann1.BAG6CY Arachis hypogaea HOM05D002593 ORTHO05D008082 8.0e-17 91.3 64 68.8
arahy.Tifrunner.gnm1.ann1.EK7H7E Arachis hypogaea HOM05D002593 ORTHO05D008082 8.0e-17 91.3 64 68.8
CsaV3_6G000300 Cucumis sativus L. HOM05D002593 ORTHO05D008082 1.0e-16 90.9 64 70.3
Thecc.01G327600 Theobroma cacao HOM05D002593 ORTHO05D008082 1.0e-16 90.9 60 71.7
MELO3C021224.2 Cucumis melo HOM05D002593 ORTHO05D008082 1.4e-16 90.5 64 71.9
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 1.4e-16 90.5 61 67.2
Medtr1g085550 Medicago truncatula HOM05D002593 ORTHO05D008082 1.4e-16 90.5 66 65.2
Phvul.007G207900 Phaseolus vulgaris HOM05D002593 ORTHO05D008082 1.4e-16 90.5 60 71.7
Gohir.A07G132500 Gossypium hirsutum HOM05D002593 ORTHO05D008082 2.3e-16 89.7 60 70.0
Gohir.D07G136800 Gossypium hirsutum HOM05D002593 ORTHO05D008082 2.3e-16 89.7 60 70.0
Gorai.001G148800 Gossypium raimondii HOM05D002593 ORTHO05D008082 2.3e-16 89.7 60 70.0
Nitab4.5_0001628g0060 Nicotiana tabacum HOM05D003479 ORTHO05D004659 2.3e-16 89.7 55 78.2
CDE11G0220 Ceratophyllum demersum HOM05D002593 ORTHO05D008082 3.0e-16 89.4 60 68.3
MD09G1291800 Malus domestica HOM05D002593 ORTHO05D008082 3.0e-16 89.4 57 73.7
Solyc01g068620.4 Solanum lycopersicum HOM05D002593 ORTHO05D008082 3.0e-16 89.4 55 76.4
Aqoxy2G02408 Aquilegia oxysepala HOM05D002593 ORTHO05D008082 4.0e-16 89.0 61 72.1
Potri.002G185100 Populus trichocarpa HOM05D002593 ORTHO05D008082 4.0e-16 89.0 60 70.0
Potri.014G110600 Populus trichocarpa HOM05D002593 ORTHO05D008082 4.0e-16 89.0 60 70.0
unitig_748.g7215 Utricularia gibba HOM05D002593 ORTHO05D008082 6.8e-16 88.2 61 67.2
Glyma.10G139600 Glycine max HOM05D002593 ORTHO05D008082 8.9e-16 87.8 60 70.0
Lj5g0028161 Lotus japonicus HOM05D002593 ORTHO05D008082 8.9e-16 87.8 60 71.7
Manes.01G236200 Manihot esculenta HOM05D002593 ORTHO05D008082 8.9e-16 87.8 60 65.0
Psat6g157840 Pisum sativum HOM05D002593 ORTHO05D008082 8.9e-16 87.8 60 68.3
ATR0796G107 Amborella trichopoda HOM05D002593 ORTHO05D008082 1.5e-15 87.0 67 59.7
VMungo0720G0036 Vigna mungo HOM05D002593 ORTHO05D008082 1.5e-15 87.0 60 66.7
COL.COLO4_23101 Corchorus olitorius HOM05D002593 ORTHO05D008082 2.6e-15 86.3 60 66.7
Hund15465 Selenicereus undatus HOM05D002593 ORTHO05D008082 3.4e-15 85.9 63 63.5
GSVIVG01028225001 Vitis vinifera HOM05D002593 ORTHO05D008082 3.4e-15 85.9 77 61.0
Sabra14G0081400 Salix brachista HOM05D002593 ORTHO05D008082 4.4e-15 85.5 60 66.7
Hund08525 Selenicereus undatus HOM05D002593 ORTHO05D008082 5.8e-15 85.1 63 61.9
TPR.G3014 Trifolium pratense HOM05D002593 ORTHO05D008082 5.8e-15 85.1 64 65.6
Lalb_Chr02g0147271 Lupinus albus HOM05D002593 ORTHO05D008082 9.8e-15 84.3 63 65.1
Sabra02G0130800 Salix brachista HOM05D002593 ORTHO05D008082 9.8e-15 84.3 60 66.7
Mapoly0125s0022 Marchantia polymorpha HOM05D002593 ORTHO05D008082 2.2e-14 83.2 61 63.9
Ca_10229_v3 Cicer arietinum L. HOM05D002593 ORTHO05D008082 2.9e-14 82.8 63 61.9
Thhalv10028817m.g Eutrema salsugineum HOM05D002593 ORTHO05D008082 2.9e-14 82.8 60 63.3
Sc17g0000080 Simmondsia chinensis HOM05D002593 ORTHO05D008082 2.9e-14 82.8 63 63.5
THA.LOC104815911 Tarenaya hassleriana HOM05D002593 ORTHO05D008082 2.9e-14 82.8 60 60.0
SEGI_17807 Sequoiadendron giganteum HOM05D002593 ORTHO05D008082 4.9e-14 82.0 61 62.3
HPP92_021910 Vanilla planifolia HOM05D002593 ORTHO05D008082 6.4e-14 81.6 64 64.1
AL6G51700 Arabidopsis lyrata HOM05D002593 ORTHO05D008082 8.3e-14 81.3 60 61.7
CARHR250020 Cardamine hirsuta HOM05D002593 ORTHO05D008082 8.3e-14 81.3 60 61.7
HanXRQChr10g0286511 Helianthus annuus HOM05D002593 ORTHO05D008082 8.3e-14 81.3 55 70.9
AT4G01650 Arabidopsis thaliana HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 61.7
BcaB01g02375 Brassica carinata HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 61.7
BcaC01g06808 Brassica carinata HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 61.7
A03p31530 Brassica napus HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 61.7
C03p38510 Brassica napus HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 61.7
BolC3t16125H Brassica oleracea HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 61.7
BraA03t12332Z Brassica rapa HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 61.7
Carub.0006s3556 Capsella rubella HOM05D002593 ORTHO05D008082 1.1e-13 80.9 60 60.0
Sp6g01540 Schrenkiella parvula HOM05D002593 ORTHO05D008082 1.8e-13 80.1 60 60.0
BcaC04g24081 Brassica carinata HOM05D002593 ORTHO05D008082 2.4e-13 79.7 60 60.0
A09p01180 Brassica napus HOM05D002593 ORTHO05D008082 2.4e-13 79.7 60 60.0
BraA09t35788Z Brassica rapa HOM05D002593 ORTHO05D008082 2.4e-13 79.7 60 60.0
C09p01260 Brassica napus HOM05D002593 ORTHO05D008082 5.4e-13 78.6 60 58.3
BolC9t53060H Brassica oleracea HOM05D002593 ORTHO05D008082 5.4e-13 78.6 60 58.3
THA.LOC104801332 Tarenaya hassleriana HOM05D002593 ORTHO05D008082 1.2e-12 77.4 60 56.7
BcaB01g02125 Brassica carinata HOM05D002593 ORTHO05D008082 1.6e-12 77.0 60 58.3
AagrBONN_evm.TU.Sc2ySwM_344.978 Anthoceros agrestis HOM05D002593 ORTHO05D008082 3.5e-12 75.9 60 60.0
Pp3c6_14570 Physcomitrium patens HOM05D002593 ORTHO05D008082 2.3e-11 73.2 61 50.8
THA.LOC104801335 Tarenaya hassleriana HOM05D002593 ORTHO05D008082 1.5e-10 70.5 63 52.4
CBR_g31139 Chara braunii HOM05D002593 ORTHO05D008082 2.5e-10 69.7 64 51.6
Aa31LG5G1360 Aethionema arabicum HOM05D002593 ORTHO05D008082 3.3e-10 69.3 60 50.0
Aa31sc2117G10 Aethionema arabicum HOM05D002593 ORTHO05D008082 3.3e-10 69.3 60 50.0
SMO339G0046 Selaginella moellendorffii HOM05D002593 ORTHO05D008082 4.3e-10 68.9 64 54.7
CDE05G1031 Ceratophyllum demersum HOM05D002593 ORTHO05D008082 9.5e-10 67.8 42 71.4
Zm00001eb139840 Zea mays HOM05D002593 ORTHO05D008082 1.6e-09 67.0 64 48.4
Os01g0971700 Oryza sativa ssp. japonica HOM05D002593 ORTHO05D008082 1.2e-07 60.8 64 46.9
Atru.chr5.836 Acer truncatum HOM05D002593 ORTHO05D008082 2.6e-07 59.7 49 53.1
Actinidia06597 Actinidia chinensis HOM05D002593 ORTHO05D006476 5.8e-07 58.5 54 51.9
Cfa002121 Carpinus fangiana HOM05D002593 ORTHO05D006476 9.8e-07 57.8 45 55.6
Dinv07258 Davidia involucrata HOM05D002593 ORTHO05D006476 9.8e-07 57.8 54 53.7
Mapoly0148s0001 Marchantia polymorpha HOM05D002593 ORTHO05D006476 9.8e-07 57.8 48 52.1
CiPaw.07G076000 Carya illinoinensis HOM05D002593 ORTHO05D006476 2.9e-06 56.2 45 55.6
CBR_g48801 Chara braunii HOM05D002593 ORTHO05D006476 2.9e-06 56.2 79 40.5
QL01p049838 Quercus lobata HOM05D002593 ORTHO05D006476 2.9e-06 56.2 45 57.8
Manes.12G083900 Manihot esculenta HOM05D002593 ORTHO05D006476 3.7e-06 55.8 45 55.6
Potri.005G070700 Populus trichocarpa HOM05D002593 ORTHO05D006476 3.7e-06 55.8 45 57.8
FvH4_3g12600 Fragaria vesca HOM05D002593 ORTHO05D006476 4.9e-06 55.5 54 50.0
TWI31G0641 Tripterygium wilfordii HOM05D002593 ORTHO05D006476 4.9e-06 55.5 57 49.1
MELO3C008996.2 Cucumis melo HOM05D002593 ORTHO05D006476 6.4e-06 55.1 45 53.3
Rhsim10G0129800 Rhododendron simsii HOM05D002593 ORTHO05D006476 6.4e-06 55.1 54 51.9
Aa31LG3G17840 Aethionema arabicum HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 55.6
Carub.0006s0769 Capsella rubella HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 55.6
CsaV3_4G031190 Cucumis sativus L. HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 51.1
DCAR_000693 Daucus carota HOM05D002593 ORTHO05D006476 8.3e-06 54.7 50 52.0
Eucgr.I00052 Eucalyptus grandis HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 53.3
Thhalv10015845m.g Eutrema salsugineum HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 55.6
FAN25G3668 Fragaria x ananassa HOM05D002593 ORTHO05D006476 8.3e-06 54.7 52 50.0
HanXRQChr03g0087641 Helianthus annuus HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 51.1
Lsat_1_v5_gn_1_80920 Lactuca sativa HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 53.3
Nitab4.5_0000066g0010 Nicotiana tabacum HOM05D002593 ORTHO05D006476 8.3e-06 54.7 88 35.2
Sp6g34150 Schrenkiella parvula HOM05D002593 ORTHO05D006476 8.3e-06 54.7 45 55.6


User provided reference genes

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