Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006820 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.1e-55 218.8 109 100.0
vmacro02612 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 7.7e-26 120.6 75 78.7
Rhsim13G0028600 Rhododendron simsii HOM05D002989 ORTHO05D003218 7.2e-24 114.0 107 58.9
Actinidia21825 Actinidia chinensis HOM05D002989 ORTHO05D003218 2.1e-23 112.5 107 57.9
TAR365G0266 Trochodendron aralioides HOM05D002989 ORTHO05D003218 6.3e-20 100.9 93 61.3
Rhsim13G0147400 Rhododendron simsii HOM05D002989 ORTHO05D003218 9.2e-19 97.1 74 68.9
Actinidia19960 Actinidia chinensis HOM05D002989 ORTHO05D003218 1.2e-18 96.7 75 62.7
Hund02862 Selenicereus undatus HOM05D002989 ORTHO05D003218 5.9e-18 94.4 72 62.5
TAR365G0943 Trochodendron aralioides HOM05D002989 ORTHO05D003218 5.9e-18 94.4 92 54.3
CSS0028390 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.3e-17 93.2 74 66.2
CSS0049118 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.3e-17 93.2 74 66.2
CSS0037436 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.3e-17 92.4 74 66.2
PSO832G1612 Papaver somniferum HOM05D002989 ORTHO05D003218 6.6e-17 90.9 85 56.5
vmacro14890 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 1.1e-16 90.1 84 57.1
CSS0009751 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.5e-16 89.7 74 63.5
CSS0036045 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.5e-16 89.7 74 63.5
CSS0041745 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 1.5e-16 89.7 74 63.5
CSS0037111 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.5e-16 89.0 74 62.2
GSVIVG01003117001 Vitis vinifera HOM05D002989 ORTHO05D003218 3.3e-16 88.6 96 51.0
Dinv32887 Davidia involucrata HOM05D002989 ORTHO05D003218 4.3e-16 88.2 94 53.2
TAR362G0937 Trochodendron aralioides HOM05D002989 ORTHO05D003218 9.5e-16 87.0 71 64.8
Prupe.8G235000 Prunus persica HOM05D002989 ORTHO05D003218 1.6e-15 86.3 87 55.2
RcHm_v2.0_Chr6g0290051 Rosa chinensis HOM05D002989 ORTHO05D003218 1.6e-15 86.3 94 51.1
Nitab4.5_0001044g0020 Nicotiana tabacum HOM05D002989 ORTHO05D003218 2.1e-15 85.9 69 58.0
Haze_04646 Corylus avellana HOM05D002989 ORTHO05D003218 3.6e-15 85.1 94 53.2
Actinidia24922 Actinidia chinensis HOM05D001150 ORTHO05D003218 4.7e-15 84.7 82 54.9
FvH4_2g23010 Fragaria vesca HOM05D002989 ORTHO05D003218 4.7e-15 84.7 94 50.0
Nn1g02454 Nelumbo nucifera HOM05D002989 ORTHO05D003218 4.7e-15 84.7 80 57.5
CiPaw.08G108900 Carya illinoinensis HOM05D002989 ORTHO05D003218 6.1e-15 84.3 94 55.3
FAN15G0470 Fragaria x ananassa HOM05D002989 ORTHO05D003218 6.1e-15 84.3 94 50.0
FAN20G1777 Fragaria x ananassa HOM05D002989 ORTHO05D003218 6.1e-15 84.3 94 50.0
FAN24G2837 Fragaria x ananassa HOM05D002989 ORTHO05D003218 6.1e-15 84.3 94 50.0
FAN27G2040 Fragaria x ananassa HOM05D002989 ORTHO05D003218 6.1e-15 84.3 94 50.0
PGR019G0005 Punica granatum HOM05D002989 ORTHO05D003218 6.1e-15 84.3 69 60.9
PGR044G2467 Punica granatum HOM05D002989 ORTHO05D003218 6.1e-15 84.3 69 60.9
CANSAT25G2944 Cannabis sativa HOM05D002989 ORTHO05D003218 8.0e-15 84.0 69 63.8
PGR044G1058 Punica granatum HOM05D002989 ORTHO05D003218 8.0e-15 84.0 69 60.9
Cfa006196 Carpinus fangiana HOM05D002989 ORTHO05D003218 2.3e-14 82.4 94 51.1
Rhsim01G0272200 Rhododendron simsii HOM05D002989 ORTHO05D003218 3.0e-14 82.0 83 54.2
Sed0003144 Sechium edule HOM05D002989 ORTHO05D003218 3.0e-14 82.0 69 60.9
Oeu025764.3 Olea europaea HOM05D002989 ORTHO05D003218 4.0e-14 81.6 72 54.2
vmacro02611 Vaccinium macrocarpon HOM05D002989 ORTHO05D003218 4.0e-14 81.6 73 57.5
ClCG07G000490 Citrullus lanatus HOM05D002989 ORTHO05D003218 5.2e-14 81.3 97 48.5
Eucgr.K03327 Eucalyptus grandis HOM05D002989 ORTHO05D003218 5.2e-14 81.3 92 45.7
CAN.G771.9 Capsicum annuum HOM05D002989 ORTHO05D003218 6.8e-14 80.9 69 58.0
Nitab4.5_0013316g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 6.8e-14 80.9 69 53.6
Manes.05G081600 Manihot esculenta HOM05D002989 ORTHO05D003218 8.9e-14 80.5 70 57.1
Oeu036121.1 Olea europaea HOM05D002989 ORTHO05D003218 1.2e-13 80.1 69 56.5
Potri.005G214650 Populus trichocarpa HOM05D002989 ORTHO05D003218 1.2e-13 80.1 77 54.5
QL12p042043 Quercus lobata HOM05D002989 ORTHO05D003218 1.2e-13 80.1 69 60.9
QL12p042063 Quercus lobata HOM05D002989 ORTHO05D003218 1.2e-13 80.1 75 57.3
MD03G1258500 Malus domestica HOM05D002989 ORTHO05D003218 1.5e-13 79.7 75 56.0
Sc17g0001200 Simmondsia chinensis HOM05D002989 ORTHO05D003218 1.5e-13 79.7 92 47.8
GSVIVG01003115001 Vitis vinifera HOM05D002989 ORTHO05D003218 1.5e-13 79.7 71 64.8
Phvul.007G174700 Phaseolus vulgaris HOM05D002989 ORTHO05D003218 2.0e-13 79.3 113 43.4
Sabra05G0164000 Salix brachista HOM05D002989 ORTHO05D003218 2.0e-13 79.3 77 53.2
Atru.chr5.1517 Acer truncatum HOM05D002989 ORTHO05D003218 2.6e-13 79.0 71 56.3
MBI11_g09455_MAGBIO Magnolia biondii HOM05D002989 ORTHO05D003218 2.6e-13 79.0 93 46.2
Aa31LG10G17170 Aethionema arabicum HOM05D002989 ORTHO05D003218 3.4e-13 78.6 71 57.7
COL.COLO4_09194 Corchorus olitorius HOM05D002989 ORTHO05D003218 3.4e-13 78.6 71 60.6
Thecc.01G272000 Theobroma cacao HOM05D002989 ORTHO05D003218 3.4e-13 78.6 82 52.4
Cpa.g.sc52.114 Carica papaya HOM05D002989 ORTHO05D003218 5.8e-13 77.8 71 57.7
Aqoxy7G03495 Aquilegia oxysepala HOM05D002989 ORTHO05D003218 7.5e-13 77.4 69 58.0
Lalb_Chr21g0306351 Lupinus albus HOM05D002989 ORTHO05D003218 9.8e-13 77.0 78 53.8
QL12p042048 Quercus lobata HOM05D002989 ORTHO05D003218 9.8e-13 77.0 69 58.0
SGA_v2.0_scaffold1G00532 Striga asiatica HOM05D002989 ORTHO05D003218 9.8e-13 77.0 94 43.6
Gohir.D08G055500 Gossypium hirsutum HOM05D002989 ORTHO05D003218 1.3e-12 76.6 71 57.7
Gorai.004G056100 Gossypium raimondii HOM05D002989 ORTHO05D003218 1.3e-12 76.6 71 57.7
MSTRG.18266 Avicennia marina HOM05D002989 ORTHO05D003218 1.7e-12 76.3 94 41.5
Ciclev10018605m.g Citrus clementina HOM05D002989 ORTHO05D003218 1.7e-12 76.3 72 55.6
Thhalv10005760m.g Eutrema salsugineum HOM05D002989 ORTHO05D003218 1.7e-12 76.3 71 53.5
AT3G63340 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 2.2e-12 75.9 71 56.3
CsaV3_2G013890 Cucumis sativus L. HOM05D002989 ORTHO05D003218 2.2e-12 75.9 92 47.8
Carub.0005s2998 Capsella rubella HOM05D002989 ORTHO05D003218 2.9e-12 75.5 71 56.3
AUR62032286 Chenopodium quinoa HOM05D002989 ORTHO05D003218 2.9e-12 75.5 71 52.1
Potri.005G214500 Populus trichocarpa HOM05D002989 ORTHO05D003218 2.9e-12 75.5 71 54.9
Hund02863 Selenicereus undatus HOM05D002989 ORTHO05D003218 2.9e-12 75.5 93 45.2
AL5G46190 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 3.7e-12 75.1 71 56.3
MELO3C014325.2 Cucumis melo HOM05D002989 ORTHO05D003218 3.7e-12 75.1 69 55.1
Duzib211G0299 Durio zibethinus HOM05D002989 ORTHO05D003218 3.7e-12 75.1 71 56.3
Lj2C1165T16 Lonicera japonica HOM05D002989 ORTHO05D003218 3.7e-12 75.1 69 56.5
AL5G46180 Arabidopsis lyrata HOM05D002989 ORTHO05D003218 4.9e-12 74.7 71 57.7
CiPaw.07G087100 Carya illinoinensis HOM05D002989 ORTHO05D003218 4.9e-12 74.7 69 56.5
TWI12G0259 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 4.9e-12 74.7 124 41.1
Sopen06g035490 Solanum pennellii HOM05D002989 ORTHO05D003218 6.4e-12 74.3 69 56.5
HanXRQChr09g0240711 Helianthus annuus HOM05D002989 ORTHO05D003218 8.3e-12 73.9 89 48.3
Sopen09g027400 Solanum pennellii HOM05D002989 ORTHO05D003218 8.3e-12 73.9 69 55.1
VMungo0720G0840 Vigna mungo HOM05D002989 ORTHO05D003218 8.3e-12 73.9 104 44.2
CAN.G380.7 Capsicum annuum HOM05D002989 ORTHO05D003218 1.1e-11 73.6 69 53.6
Manes.01G204300 Manihot esculenta HOM05D002989 ORTHO05D003218 1.1e-11 73.6 71 52.1
Sabra05G0163900 Salix brachista HOM05D002989 ORTHO05D003218 1.1e-11 73.6 71 53.5
Solyc09g065650.3 Solanum lycopersicum HOM05D002989 ORTHO05D003218 1.1e-11 73.6 69 53.6
AT3G63320 Arabidopsis thaliana HOM05D002989 ORTHO05D003218 1.4e-11 73.2 71 56.3
A04p00100 Brassica napus HOM05D002989 ORTHO05D003218 1.4e-11 73.2 71 54.9
BraA04t15730Z Brassica rapa HOM05D002989 ORTHO05D003218 1.4e-11 73.2 71 54.9
Lj5g0006345 Lotus japonicus HOM05D002989 ORTHO05D003218 1.4e-11 73.2 78 51.3
Nitab4.5_0000459g0030 Nicotiana tabacum HOM05D002989 ORTHO05D003218 1.4e-11 73.2 68 54.4
BcaB02g08065 Brassica carinata HOM05D002989 ORTHO05D003218 1.9e-11 72.8 71 54.9
C04p29910 Brassica napus HOM05D002989 ORTHO05D003218 1.9e-11 72.8 71 54.9
BolC4t24522H Brassica oleracea HOM05D002989 ORTHO05D003218 1.9e-11 72.8 71 54.9
CARHR291630 Cardamine hirsuta HOM05D002989 ORTHO05D003218 1.9e-11 72.8 71 54.9
Glyma.02G144500 Glycine max HOM05D002989 ORTHO05D003218 1.9e-11 72.8 86 48.8
Lj2C1165G7 Lonicera japonica HOM05D002989 ORTHO05D003218 1.9e-11 72.8 88 48.9
Nitab4.5_0003775g0010 Nicotiana tabacum HOM05D002989 ORTHO05D003218 1.9e-11 72.8 68 52.9
Peaxi162Scf00608g00921 Petunia axillaris HOM05D002989 ORTHO05D003218 1.9e-11 72.8 69 50.7
Peaxi162Scf00230g00019 Petunia axillaris HOM05D002989 ORTHO05D003218 2.4e-11 72.4 68 52.9
Ah.11g050240 Amaranthus hybridus HOM05D002989 ORTHO05D003218 3.2e-11 72.0 69 50.7
ECA247G3236 Erigeron canadensis HOM05D002989 ORTHO05D003218 3.2e-11 72.0 68 55.9
Gohir.A08G045205 Gossypium hirsutum HOM05D002989 ORTHO05D003218 3.2e-11 72.0 71 56.3
Lsat_1_v5_gn_5_185781 Lactuca sativa HOM05D002989 ORTHO05D003218 4.1e-11 71.6 73 53.4
Psat6g059040 Pisum sativum HOM05D000123 ORTHO05D000064 5.4e-11 71.2 79 51.9
Sp5g00200 Schrenkiella parvula HOM05D002989 ORTHO05D003218 5.4e-11 71.2 69 55.1
THA.LOC104809895 Tarenaya hassleriana HOM05D002989 ORTHO05D003218 5.4e-11 71.2 69 56.5
Haze_04649 Corylus avellana HOM05D002989 ORTHO05D003218 7.0e-11 70.9 69 53.6
arahy.Tifrunner.gnm1.ann1.T1HKRS Arachis hypogaea HOM05D002989 ORTHO05D003218 9.2e-11 70.5 80 50.0
AUR62032285 Chenopodium quinoa HOM05D002989 ORTHO05D003218 9.2e-11 70.5 79 45.6
RcHm_v2.0_Chr3g0479641 Rosa chinensis HOM05D002989 ORTHO05D003218 9.2e-11 70.5 89 48.3
SalBow4G0275 Salvia bowleyana HOM05D002989 ORTHO05D003218 9.2e-11 70.5 67 50.7
AUR62011976 Chenopodium quinoa HOM05D002989 ORTHO05D003218 1.2e-10 70.1 69 52.2
arahy.Tifrunner.gnm1.ann1.V0L3RT Arachis hypogaea HOM05D002989 ORTHO05D003218 1.6e-10 69.7 80 48.8
Ca_09731_v3 Cicer arietinum L. HOM05D002989 ORTHO05D003218 1.6e-10 69.7 74 52.7
TPR.G25700 Trifolium pratense HOM05D002989 ORTHO05D003218 1.6e-10 69.7 79 49.4
HanXRQChr09g0240611 Helianthus annuus HOM05D002989 ORTHO05D003218 2.7e-10 68.9 89 46.1
Medtr1g071370 Medicago truncatula HOM05D002989 ORTHO05D003218 2.7e-10 68.9 79 49.4
ATR0665G490 Amborella trichopoda HOM05D002989 ORTHO05D003218 4.6e-10 68.2 73 52.1
Cfa006195 Carpinus fangiana HOM05D002989 ORTHO05D003218 4.6e-10 68.2 69 50.7
Cc01_g19030 Coffea canephora HOM05D002989 ORTHO05D003218 4.6e-10 68.2 93 40.9
Migut.D00359 Erythranthe guttata HOM05D002989 ORTHO05D003218 4.6e-10 68.2 73 45.2
MD00G1147800 Malus domestica HOM05D002989 ORTHO05D003218 4.6e-10 68.2 75 52.0
Lsat_1_v5_gn_9_7440 Lactuca sativa HOM05D002989 ORTHO05D003218 6.0e-10 67.8 72 51.4
HPP92_020348 Vanilla planifolia HOM05D002989 ORTHO05D003218 7.8e-10 67.4 124 37.1
DCAR_012504 Daucus carota HOM05D002989 ORTHO05D003218 1.3e-09 66.6 70 52.9
HanXRQChr10g0281961 Helianthus annuus HOM05D002989 ORTHO05D003218 1.7e-09 66.2 68 52.9
CSS0014533 Camellia sinensis var. sinensis HOM05D002989 ORTHO05D003218 2.3e-09 65.9 80 50.0
Sp5g00210 Schrenkiella parvula HOM05D002989 ORTHO05D003218 2.3e-09 65.9 71 52.1
EL10Ac5g10497 Beta vulgaris HOM05D002989 ORTHO05D003218 3.0e-09 65.5 72 48.6
MD00G1147300 Malus domestica HOM05D002989 ORTHO05D003218 3.0e-09 65.5 75 50.7
MD08G1204000 Malus domestica HOM05D002989 ORTHO05D003218 3.0e-09 65.5 75 50.7
unitig_0.g140 Utricularia gibba HOM05D002989 ORTHO05D003218 3.0e-09 65.5 75 44.0
Atru.chr5.1516 Acer truncatum HOM05D002989 ORTHO05D003218 3.9e-09 65.1 71 53.5
CDE05G0153 Ceratophyllum demersum HOM05D002989 ORTHO05D003218 3.9e-09 65.1 76 46.1
Cc01_g19040 Coffea canephora HOM05D002989 ORTHO05D003218 8.6e-09 63.9 72 48.6
SEGI_15483 Sequoiadendron giganteum HOM05D017310 ORTHO05D003218 1.1e-08 63.5 71 52.1
Peaxi162Scf00732g00115 Petunia axillaris HOM05D002989 ORTHO05D003218 1.5e-08 63.2 101 40.6
HanXRQChr11g0338821 Helianthus annuus HOM05D002989 ORTHO05D003218 1.9e-08 62.8 69 49.3
MSTRG.21529 Avicennia marina HOM05D002989 ORTHO05D003218 3.3e-08 62.0 72 45.8
MD00G1147600 Malus domestica HOM05D002989 ORTHO05D003218 3.3e-08 62.0 73 49.3
PGSC0003DMG400030387 Solanum tuberosum HOM05D002989 ORTHO05D003218 3.3e-08 62.0 101 42.6
Migut.D00361 Erythranthe guttata HOM05D002989 ORTHO05D003218 4.3e-08 61.6 72 51.4
HanXRQChr09g0240681 Helianthus annuus HOM05D002989 ORTHO05D003218 1.2e-07 60.1 64 50.0
TWI60G1134 Tripterygium wilfordii HOM05D002989 ORTHO05D003218 1.2e-07 60.1 69 47.8
Nitab4.5_0000172g2190 Nicotiana tabacum HOM05D002989 ORTHO05D003218 1.6e-07 59.7 103 39.8
Duzib114G0118 Durio zibethinus HOM05D002989 ORTHO05D003218 3.6e-07 58.5 74 43.2
Lsat_1_v5_gn_9_7521 Lactuca sativa HOM05D002989 ORTHO05D003218 3.6e-07 58.5 68 48.5
Ciclev10023714m.g Citrus clementina HOM05D002989 ORTHO05D003218 4.7e-07 58.2 69 49.3
Os11g0586100 Oryza sativa ssp. japonica HOM05D002989 ORTHO05D003218 6.2e-07 57.8 103 35.9
SGA_v2.0_scaffold1G00529 Striga asiatica HOM05D002989 ORTHO05D003218 6.2e-07 57.8 70 40.0
Nitab4.5_0002266g0120 Nicotiana tabacum HOM05D002989 ORTHO05D003218 1.4e-06 56.6 101 39.6
SalBow4G0873 Salvia bowleyana HOM05D002989 ORTHO05D003218 2.3e-06 55.8 71 45.1
Nitab4.5_0004086g0050 Nicotiana tabacum HOM05D002989 ORTHO05D003218 4.0e-06 55.1 101 37.6
MD08G1204800 Malus domestica HOM05D002989 ORTHO05D003218 6.8e-06 54.3 66 51.5


User provided reference genes

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