Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 9.0e-47 189.9 94 100.0
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.1e-44 180.3 96 95.8
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.2e-29 132.1 97 72.2
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.9e-28 129.0 96 67.7
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 7.9e-27 123.6 95 67.4
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 7.9e-27 123.6 95 67.4
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.3e-25 118.2 97 70.1
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.1e-23 113.2 97 60.8
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.1e-23 111.7 98 65.3
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.0e-23 111.3 99 67.7
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 4.9e-21 104.4 97 57.7
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.5e-21 104.0 94 60.6
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 4.2e-20 101.3 94 56.4
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.5e-19 98.2 96 52.1
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 1.3e-18 96.3 97 53.6
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.3e-18 95.5 98 54.1
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 3.0e-18 95.1 94 57.4
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 3.9e-18 94.7 95 47.4
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 5.1e-18 94.4 96 52.1
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 6.7e-18 94.0 98 55.1
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.9e-17 92.4 96 53.1
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 5.7e-17 90.9 97 50.5
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 7.4e-17 90.5 96 51.0
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.3e-16 89.7 86 57.0
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.3e-16 89.7 97 50.5
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.6e-16 89.4 95 48.4
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 1.6e-16 89.4 94 48.9
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 1.6e-16 89.4 96 52.1
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.6e-16 89.4 96 49.0
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 6.3e-16 87.4 97 51.5
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 8.2e-16 87.0 96 47.9
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.1e-15 86.7 94 46.8
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 1.1e-15 86.7 96 49.0
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.1e-15 86.7 74 60.8
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-15 86.3 96 47.9
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.4e-15 86.3 94 48.9
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 1.8e-15 85.9 96 49.0
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 1.8e-15 85.9 96 47.9
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 1.8e-15 85.9 94 47.9
vmacro23105 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.8e-15 85.9 67 68.7
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 2.4e-15 85.5 94 48.9
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 2.4e-15 85.5 95 51.6
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.4e-15 85.5 94 52.1
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 3.1e-15 85.1 94 47.9
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 3.1e-15 85.1 58 72.4
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 4.1e-15 84.7 96 50.0
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 5.3e-15 84.3 93 50.5
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.2e-14 83.2 96 46.9
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.2e-14 83.2 94 50.0
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 1.5e-14 82.8 94 50.0
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.0e-14 82.4 93 49.5
ECA233G0462 Erigeron canadensis HOM05D003745 ORTHO05D004215 2.6e-14 82.0 99 47.5
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 2.6e-14 82.0 94 50.0
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 3.4e-14 81.6 108 46.3
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 4.5e-14 81.3 94 43.6
Peaxi162Scf00789g00618 Petunia axillaris HOM05D003745 ORTHO05D004215 4.5e-14 81.3 93 50.5
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 5.9e-14 80.9 92 47.8
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 5.9e-14 80.9 92 47.8
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 7.7e-14 80.5 94 44.7
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 1.3e-13 79.7 94 52.1
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 1.3e-13 79.7 95 46.3
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.3e-13 79.7 94 44.7
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.3e-13 79.7 100 52.0
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 1.7e-13 79.3 94 43.6
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 1.7e-13 79.3 95 47.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.7e-13 79.3 88 50.0
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 1.7e-13 79.3 89 47.2
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.2e-13 79.0 94 42.6
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 2.2e-13 79.0 90 45.6
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 2.9e-13 78.6 94 46.8
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 2.9e-13 78.6 106 48.1
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 3.8e-13 78.2 94 45.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.8e-13 78.2 96 49.0
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 3.8e-13 78.2 97 48.5
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 3.8e-13 78.2 106 47.2
CARHR151430 Cardamine hirsuta HOM05D003745 ORTHO05D004215 5.0e-13 77.8 92 50.0
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 6.5e-13 77.4 95 45.3
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 6.5e-13 77.4 50 70.0
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 8.5e-13 77.0 88 48.9
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.1e-12 76.6 93 52.7
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 1.4e-12 76.3 90 46.7
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.4e-12 76.3 95 45.3
Manes.09G058940 Manihot esculenta HOM05D003745 ORTHO05D004215 1.9e-12 75.9 99 49.5
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 1.9e-12 75.9 87 46.0
Peaxi162Scf00157g00066 Petunia axillaris HOM05D003745 ORTHO05D004215 1.9e-12 75.9 95 43.2
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 2.5e-12 75.5 95 44.2
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 3.2e-12 75.1 92 48.9
HanXRQChr13g0396991 Helianthus annuus HOM05D003745 ORTHO05D004215 3.2e-12 75.1 88 54.5
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 4.2e-12 74.7 84 48.8
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 4.2e-12 74.7 61 63.9
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 5.5e-12 74.3 93 50.5
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 5.5e-12 74.3 93 41.9
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 7.2e-12 73.9 94 43.6
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 7.2e-12 73.9 87 47.1
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 7.2e-12 73.9 96 49.0
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.2e-11 73.2 96 44.8
Eucgr.B03895 Eucalyptus grandis HOM05D003745 ORTHO05D004215 1.6e-11 72.8 97 42.3
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.6e-11 72.8 94 45.7
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.1e-11 72.4 102 45.1
Duzib106G0171 Durio zibethinus HOM05D003745 ORTHO05D004215 3.6e-11 71.6 96 42.7
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 3.6e-11 71.6 96 44.8
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 6.1e-11 70.9 98 44.9
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 6.1e-11 70.9 97 47.4
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 7.9e-11 70.5 98 44.9
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 1.0e-10 70.1 65 55.4
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 1.4e-10 69.7 102 49.0
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 1.4e-10 69.7 96 42.7
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 1.4e-10 69.7 48 66.7
Sc12g0004180 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.4e-10 69.7 59 55.9
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.4e-10 69.7 90 46.7
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.3e-10 68.9 102 47.1
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.3e-10 68.9 102 47.1
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 2.3e-10 68.9 86 41.9
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 2.3e-10 68.9 93 46.2
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.3e-10 68.9 93 46.2
Solyc11g066880.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 2.3e-10 68.9 97 43.3
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 2.3e-10 68.9 49 65.3
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.0e-10 68.6 93 41.9
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.0e-10 68.6 93 41.9
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 3.0e-10 68.6 97 43.3
C01p34270 Brassica napus HOM05D003745 ORTHO05D004215 3.9e-10 68.2 92 41.3
BolC1t03395H Brassica oleracea HOM05D003745 ORTHO05D004215 3.9e-10 68.2 92 41.3
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 3.9e-10 68.2 97 44.3
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 3.9e-10 68.2 97 44.3
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 3.9e-10 68.2 95 44.2
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 6.7e-10 67.4 94 38.3
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 8.8e-10 67.0 98 42.9
SalBow3G0913 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.1e-09 66.6 94 42.6
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 1.5e-09 66.2 93 43.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 95 44.2
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 1.5e-09 66.2 94 40.4
TWI74G0799 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.5e-09 66.2 97 46.4
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 2.5e-09 65.5 41 70.7
PGSC0003DMG400026535 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.5e-09 65.5 97 43.3
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 3.3e-09 65.1 53 54.7
Gohir.D01G198300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 3.3e-09 65.1 94 38.3
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 3.3e-09 65.1 97 44.3
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 3.3e-09 65.1 88 44.3
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 4.3e-09 64.7 97 39.2
Gohir.A01G209200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.3e-09 64.7 94 39.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 4.3e-09 64.7 94 42.6
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 5.7e-09 64.3 84 40.5
Gohir.A04G066114 Gossypium hirsutum HOM05D003745 ORTHO05D004215 5.7e-09 64.3 63 44.4
Sopen11g026590 Solanum pennellii HOM05D003745 ORTHO05D004215 5.7e-09 64.3 80 45.0
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 7.4e-09 63.9 95 44.2
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 7.4e-09 63.9 94 42.6
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 9.7e-09 63.5 92 45.7
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.7e-09 63.5 56 57.1
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 1.3e-08 63.2 96 46.9
CiPaw.10G005500 Carya illinoinensis HOM05D003745 ORTHO05D004215 2.2e-08 62.4 89 40.4
PGSC0003DMG400002682 Solanum tuberosum HOM05D003745 ORTHO05D004215 2.2e-08 62.4 89 38.2
CAN.G644.31 Capsicum annuum HOM05D003745 ORTHO05D004215 2.8e-08 62.0 97 41.2
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 3.7e-08 61.6 104 41.3
BraA01t02615Z Brassica rapa HOM05D003745 ORTHO05D004215 6.3e-08 60.8 92 40.2
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 1.4e-07 59.7 94 44.7
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 1.4e-07 59.7 100 37.0
Peaxi162Scf00433g00025 Petunia axillaris HOM05D003745 ORTHO05D004215 2.4e-07 58.9 90 38.9
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 5.3e-07 57.8 32 78.1
Sopen09g003840 Solanum pennellii HOM05D003745 ORTHO05D004215 5.3e-07 57.8 80 38.8
Nitab4.5_0000663g0130 Nicotiana tabacum HOM05D003745 ORTHO05D004215 6.9e-07 57.4 91 40.7
Peaxi162Scf00110g02023 Petunia axillaris HOM05D003745 ORTHO05D004215 6.9e-07 57.4 84 42.9
Solyc10g083580.2 Solanum lycopersicum HOM05D003745 ORTHO05D004215 6.9e-07 57.4 90 37.8
FAN09G1254 Fragaria x ananassa HOM05D003745 ORTHO05D004215 9.1e-07 57.0 93 40.9
PGR102G0577 Punica granatum HOM05D003745 ORTHO05D004215 9.1e-07 57.0 99 37.4
SalBow3G0501 Salvia bowleyana HOM05D003745 ORTHO05D004215 9.1e-07 57.0 85 42.4
A10p32390 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-06 56.6 40 65.0
C09p73210 Brassica napus HOM05D003745 ORTHO05D004215 1.2e-06 56.6 40 65.0
BolC9t60056H Brassica oleracea HOM05D003745 ORTHO05D004215 1.2e-06 56.6 40 65.0
BraA10t45279Z Brassica rapa HOM05D003745 ORTHO05D004215 1.2e-06 56.6 40 65.0
Nitab4.5_0010833g0010 Nicotiana tabacum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 93 39.8
PGSC0003DMG400028173 Solanum tuberosum HOM05D003745 ORTHO05D004215 1.2e-06 56.6 90 37.8
CARHR209590 Cardamine hirsuta HOM05D003745 ORTHO05D004215 2.0e-06 55.8 47 55.3
Gorai.002G242500 Gossypium raimondii HOM05D003745 ORTHO05D004215 2.0e-06 55.8 95 36.8
Sp6g39010 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.4e-06 55.1 92 38.0
Sopen10g033060 Solanum pennellii HOM05D003745 ORTHO05D004215 3.4e-06 55.1 90 35.6
Carub.0006s0262 Capsella rubella HOM05D003745 ORTHO05D004215 4.5e-06 54.7 99 35.4
Dinv12522 Davidia involucrata HOM05D003745 ORTHO05D004215 5.9e-06 54.3 59 55.9
A01p26850 Brassica napus HOM05D003745 ORTHO05D004215 7.7e-06 53.9 35 68.6
Thhalv10015130m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 7.7e-06 53.9 96 36.5
Nitab4.5_0000132g0150 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.7e-06 53.9 37 62.2
Nitab4.5_0006360g0020 Nicotiana tabacum HOM05D003745 ORTHO05D004215 7.7e-06 53.9 91 40.7


User provided reference genes

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