Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.1e-272 941.8 491 100.0
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 9.2e-252 873.2 473 96.8
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 4.8e-200 701.4 450 82.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 8.7e-194 680.6 452 78.5
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.2e-171 607.1 453 71.3
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 3.0e-170 602.4 458 69.9
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 1.1e-169 600.5 465 69.9
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 7.4e-169 597.8 456 70.8
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 7.7e-166 587.8 451 69.4
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.2e-163 580.5 460 67.8
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 8.8e-162 574.3 452 67.3
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 7.0e-159 564.7 452 67.0
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.2e-158 563.9 457 64.3
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 7.7e-158 561.2 453 65.6
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 1.7e-157 560.1 453 65.8
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.4e-154 550.4 453 63.4
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 4.0e-154 548.9 452 63.9
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 8.8e-154 547.7 454 63.7
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 1.2e-153 547.4 453 65.6
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 5.7e-153 545.0 455 64.2
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 7.5e-153 544.7 453 64.2
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 1.7e-152 543.5 454 63.0
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.4e-151 540.4 453 63.4
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 2.4e-151 539.7 453 64.7
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 2.0e-150 536.6 453 63.1
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 4.5e-150 535.4 456 64.7
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.3e-149 533.1 517 59.6
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.9e-148 530.0 457 61.9
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.9e-148 530.0 454 63.9
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.5e-148 529.6 452 62.2
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 3.3e-148 529.3 365 75.3
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 3.3e-148 529.3 452 61.7
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 4.2e-148 528.9 453 61.8
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 4.2e-148 528.9 451 61.9
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 8.0e-147 524.6 453 60.9
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.0e-146 524.2 456 65.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 1.8e-146 523.5 453 60.7
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 6.8e-146 521.5 457 63.9
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 8.9e-146 521.2 457 63.7
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 2.8e-144 516.2 456 61.0
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.7e-144 515.8 451 60.5
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 4.9e-144 515.4 465 59.6
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 6.3e-144 515.0 409 67.7
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.8e-143 513.5 455 60.4
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 2.4e-143 513.1 430 64.0
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 3.2e-143 512.7 454 59.9
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 9.2e-143 511.1 456 60.7
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 2.9e-141 506.1 677 46.8
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.1e-140 504.2 455 60.9
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 7.3e-140 501.5 452 60.2
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 1.5e-137 493.8 454 61.2
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.8e-137 491.9 454 59.3
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 7.5e-137 491.5 454 58.6
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 1.7e-136 490.3 456 58.3
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.7e-136 489.2 464 57.1
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 4.9e-136 488.8 454 63.0
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 3.0e-133 479.6 461 59.2
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.0e-133 479.6 457 57.1
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 5.0e-133 478.8 456 57.5
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.5e-132 476.5 455 58.2
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 6.2e-131 471.9 455 56.9
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.1e-130 471.1 458 57.6
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.8e-130 470.3 454 56.8
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 2.3e-130 469.9 453 57.2
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.4e-129 465.7 453 56.5
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.4e-129 465.7 453 56.5
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 4.4e-129 465.7 376 64.6
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 5.8e-129 465.3 454 56.6
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 1.3e-128 464.2 453 56.1
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 3.7e-128 462.6 453 56.5
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 4.9e-128 462.2 453 55.6
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.4e-128 461.8 549 49.4
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 7.8e-126 454.9 381 64.0
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.3e-125 454.1 491 54.8
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.3e-124 449.5 429 58.7
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 5.2e-122 442.2 453 56.1
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 4.4e-121 439.1 444 57.2
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.7e-120 437.2 397 59.2
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 3.5e-118 429.5 433 55.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 4.6e-118 429.1 418 57.7
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.7e-117 427.2 456 55.0
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 1.5e-116 424.1 353 65.2
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 3.3e-116 422.9 394 57.1
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.6e-115 420.6 322 68.9
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 3.4e-113 412.9 437 54.0
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 8.4e-112 408.3 371 62.5
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 5.4e-111 405.6 419 55.4
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.6e-110 404.1 371 60.6
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.6e-107 394.0 465 49.9
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 4.0e-106 389.4 290 67.9
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.2e-102 377.9 494 49.0
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 7.9e-102 375.2 291 67.4
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.0e-101 374.8 356 57.0
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.7e-101 374.0 411 52.8
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.5e-100 370.9 353 58.9
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 1.9e-100 370.5 274 70.1
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 4.3e-100 369.4 485 46.8
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.4e-95 354.4 474 44.5
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.3e-93 347.1 265 68.3
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.1e-92 344.7 455 47.9
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.1e-92 344.7 254 72.0
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.4e-90 337.8 333 55.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 2.9e-88 330.1 294 60.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.1e-84 318.2 472 44.1
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.8e-82 310.8 304 56.6
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.3e-80 304.7 227 66.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.1e-76 291.6 242 64.0
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 1.9e-76 290.8 386 46.9
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 2.5e-76 290.4 370 47.8
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 9.4e-71 271.9 446 40.8
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 6.7e-69 265.8 305 54.4
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 2.8e-67 260.4 450 42.0
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 4.1e-66 256.5 510 37.8
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.7e-62 243.8 289 50.5
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.7e-59 234.6 169 69.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.8e-59 233.0 297 47.5
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 3.5e-49 200.3 159 65.4
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 6.8e-45 186.0 195 54.9
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 1.1e-39 168.7 160 56.9
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.6e-38 164.9 550 29.1
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 1.8e-34 151.4 107 71.0
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.0e-33 147.9 154 52.6
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 5.9e-33 146.4 556 30.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.3e-31 140.2 166 53.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 1.2e-30 138.7 360 30.6
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 1.3e-24 118.6 145 47.6
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.6e-22 111.7 161 41.0
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.7e-22 110.2 66 83.3
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 4.0e-21 107.1 127 48.0
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 2.6e-20 104.4 133 46.6
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 4.9e-19 100.1 121 47.9
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 1.4e-18 98.6 106 48.1
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 1.2e-17 95.5 84 61.9
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 3.0e-16 90.9 86 55.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 5.6e-15 86.7 81 56.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-12 78.6 75 56.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.5e-12 78.6 75 56.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.4e-12 77.4 75 54.7
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-11 75.5 75 56.0
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 1.2e-09 68.9 73 50.7
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.1e-09 68.2 54 66.7
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 4.7e-06 57.0 32 78.1


User provided reference genes

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