Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006775 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 4.4e-141 504.6 253 100.0
CSS0042147 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 1.5e-120 436.4 241 90.9
Dinv37721 Davidia involucrata HOM05D004703 ORTHO05D005801 3.2e-115 418.7 237 87.3
Actinidia14493 Actinidia chinensis HOM05D004703 ORTHO05D005801 4.0e-110 401.7 241 82.2
TAR629G2760 Trochodendron aralioides HOM05D004703 ORTHO05D005801 5.3e-110 401.4 237 84.8
DCAR_006785 Daucus carota HOM05D004703 ORTHO05D005801 1.5e-109 399.8 235 83.4
Cc08_g13610 Coffea canephora HOM05D004703 ORTHO05D005801 7.6e-109 397.5 232 83.6
Rhsim08G0184400 Rhododendron simsii HOM05D004703 ORTHO05D005801 2.2e-108 396.0 241 81.7
PGSC0003DMG400003941 Solanum tuberosum HOM05D004703 ORTHO05D005801 8.4e-108 394.0 231 84.4
Oeu001909.1 Olea europaea HOM05D004703 ORTHO05D005801 1.1e-107 393.7 231 83.5
Hma1.2p1_0138F.1_g062820 Hydrangea macrophylla HOM05D004703 ORTHO05D005801 1.9e-107 392.9 230 83.9
Nitab4.5_0012494g0020 Nicotiana tabacum HOM05D004703 ORTHO05D005801 1.2e-106 390.2 231 83.5
Nitab4.5_0005167g0040 Nicotiana tabacum HOM05D004703 ORTHO05D005801 2.1e-106 389.4 231 83.1
Lalb_Chr05g0225211 Lupinus albus HOM05D004703 ORTHO05D005801 2.7e-106 389.0 231 81.0
Sopen08g028180 Solanum pennellii HOM05D004703 ORTHO05D005801 2.7e-106 389.0 230 83.5
Solyc08g079820.3 Solanum lycopersicum HOM05D004703 ORTHO05D005801 1.3e-105 386.7 230 83.0
CAN.G630.24 Capsicum annuum HOM05D004703 ORTHO05D005801 3.0e-105 385.6 243 79.8
GSVIVG01019903001 Vitis vinifera HOM05D004703 ORTHO05D005801 3.0e-105 385.6 232 79.7
QL12p016126 Quercus lobata HOM05D004703 ORTHO05D005801 3.9e-105 385.2 230 82.6
QL12p016291 Quercus lobata HOM05D004703 ORTHO05D005801 3.9e-105 385.2 230 82.6
Lj2A203G54 Lonicera japonica HOM05D004703 ORTHO05D005801 1.1e-104 383.6 236 81.4
Thecc.03G266100 Theobroma cacao HOM05D004703 ORTHO05D005801 1.5e-104 383.3 231 81.8
arahy.Tifrunner.gnm1.ann1.RRY62Q Arachis hypogaea HOM05D004703 ORTHO05D005801 2.5e-104 382.5 231 81.4
Atru.chr9.1491 Acer truncatum HOM05D004703 ORTHO05D005801 4.3e-104 381.7 231 81.8
Migut.A00879 Erythranthe guttata HOM05D004703 ORTHO05D005801 7.4e-104 380.9 231 79.7
COL.COLO4_23815 Corchorus olitorius HOM05D004703 ORTHO05D005801 1.6e-103 379.8 231 81.0
CiPaw.11G143800 Carya illinoinensis HOM05D004703 ORTHO05D005801 6.2e-103 377.9 231 81.4
CANSAT21G0478 Cannabis sativa HOM05D004703 ORTHO05D005801 1.1e-102 377.1 233 77.7
FvH4_5g01080 Fragaria vesca HOM05D004703 ORTHO05D005801 1.1e-102 377.1 232 78.4
PGR042G1634 Punica granatum HOM05D004703 ORTHO05D005801 1.8e-102 376.3 232 80.2
Ciclev10021310m.g Citrus clementina HOM05D004703 ORTHO05D005801 2.4e-102 375.9 231 80.1
FAN18G3460 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.0e-102 375.2 230 78.7
TPR.G37619 Trifolium pratense HOM05D004703 ORTHO05D005801 6.9e-102 374.4 230 80.0
RcHm_v2.0_Chr7g0200241 Rosa chinensis HOM05D004703 ORTHO05D005801 9.0e-102 374.0 235 76.6
Ca_12294_v3 Cicer arietinum L. HOM05D004703 ORTHO05D005801 1.2e-101 373.6 230 79.6
Potri.003G118300 Populus trichocarpa HOM05D004703 ORTHO05D005801 1.2e-101 373.6 231 79.7
Haze_09002 Corylus avellana HOM05D004703 ORTHO05D005801 1.5e-101 373.2 243 76.5
Eucgr.E00504 Eucalyptus grandis HOM05D004703 ORTHO05D005801 1.5e-101 373.2 231 78.8
Duzib084G1157 Durio zibethinus HOM05D004703 ORTHO05D005801 2.0e-101 372.9 231 78.8
Sed0028019 Sechium edule HOM05D004703 ORTHO05D005801 2.0e-101 372.9 231 78.4
FAN13G0401 Fragaria x ananassa HOM05D004703 ORTHO05D005801 4.5e-101 371.7 230 77.8
Peaxi162Scf00620g00231 Petunia axillaris HOM05D004703 ORTHO05D005801 4.5e-101 371.7 255 74.5
VMungo0251G1252 Vigna mungo HOM05D004703 ORTHO05D005801 4.5e-101 371.7 230 78.7
MBI04_g28556_MAGBIO Magnolia biondii HOM05D004703 ORTHO05D005801 5.8e-101 371.3 231 78.4
Lj4g0003091 Lotus japonicus HOM05D004703 ORTHO05D005801 7.6e-101 370.9 230 78.7
Gorai.006G210900 Gossypium raimondii HOM05D004703 ORTHO05D005801 2.2e-100 369.4 231 78.8
Phvul.003G216900 Phaseolus vulgaris HOM05D004703 ORTHO05D005801 2.2e-100 369.4 230 79.6
Glyma.05G054900 Glycine max HOM05D004703 ORTHO05D005801 3.8e-100 368.6 229 79.5
Medtr4g101830 Medicago truncatula HOM05D004703 ORTHO05D005801 4.9e-100 368.2 230 79.1
Gohir.A09G193900 Gossypium hirsutum HOM05D004703 ORTHO05D005801 1.4e-99 366.7 231 77.9
AUR62010550 Chenopodium quinoa HOM05D004703 ORTHO05D005801 3.2e-99 365.5 230 77.4
SGA_v2.0_scaffold37G14871 Striga asiatica HOM05D004703 ORTHO05D005801 3.2e-99 365.5 230 77.8
Psat4g069480 Pisum sativum HOM05D004703 ORTHO05D005801 4.2e-99 365.2 231 77.5
AUR62017343 Chenopodium quinoa HOM05D004703 ORTHO05D005801 5.5e-99 364.8 230 76.5
Manes.01G070700 Manihot esculenta HOM05D004703 ORTHO05D005801 5.5e-99 364.8 240 75.8
Glyma.05G054800 Glycine max HOM05D004703 ORTHO05D005801 7.1e-99 364.4 230 77.0
Gohir.D09G188100 Gossypium hirsutum HOM05D004703 ORTHO05D005801 7.1e-99 364.4 231 77.9
TWI15G0205 Tripterygium wilfordii HOM05D004703 ORTHO05D005801 9.3e-99 364.0 231 77.1
AT4G11980 Arabidopsis thaliana HOM05D004703 ORTHO05D005801 1.6e-98 363.2 237 74.3
Thhalv10028825m.g Eutrema salsugineum HOM05D004703 ORTHO05D005801 2.1e-98 362.8 231 76.2
Hund14696 Selenicereus undatus HOM05D004703 ORTHO05D005801 2.7e-98 362.5 231 76.6
CsaV3_5G003450 Cucumis sativus L. HOM05D004703 ORTHO05D005801 3.5e-98 362.1 231 77.5
CARHR254310 Cardamine hirsuta HOM05D004703 ORTHO05D005801 4.6e-98 361.7 231 74.9
CDE04G3458 Ceratophyllum demersum HOM05D004703 ORTHO05D005801 6.0e-98 361.3 232 75.4
Sabra03G0082300 Salix brachista HOM05D004703 ORTHO05D005801 6.0e-98 361.3 247 74.1
AL6G46750 Arabidopsis lyrata HOM05D004703 ORTHO05D005801 7.9e-98 360.9 230 75.7
MD04G1073000 Malus domestica HOM05D004703 ORTHO05D005801 7.9e-98 360.9 235 74.5
Aqoxy7G00537 Aquilegia oxysepala HOM05D004703 ORTHO05D005801 1.0e-97 360.5 231 77.5
Prupe.5G084800 Prunus persica HOM05D004703 ORTHO05D005801 1.0e-97 360.5 231 77.1
RcHm_v2.0_Chr6g0265101 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-97 360.1 232 75.4
RcHm_v2.0_Chr6g0265181 Rosa chinensis HOM05D004703 ORTHO05D005801 1.3e-97 360.1 232 75.4
Carub.0006s3108 Capsella rubella HOM05D004703 ORTHO05D005801 3.9e-97 358.6 231 73.6
Os06g0129700 Oryza sativa ssp. japonica HOM05D004703 ORTHO05D005801 6.7e-97 357.8 239 73.2
BcaC04g21182 Brassica carinata HOM05D004703 ORTHO05D005801 3.3e-96 355.5 231 74.9
C09p34490 Brassica napus HOM05D004703 ORTHO05D005801 3.3e-96 355.5 231 74.9
BolC9t56293H Brassica oleracea HOM05D004703 ORTHO05D005801 3.3e-96 355.5 231 74.9
Ah.02g116260 Amaranthus hybridus HOM05D004703 ORTHO05D005801 4.3e-96 355.1 231 74.0
Lsat_1_v5_gn_6_10661 Lactuca sativa HOM05D004703 ORTHO05D005801 4.3e-96 355.1 231 73.2
BcaB01g01695 Brassica carinata HOM05D004703 ORTHO05D005801 1.6e-95 353.2 231 75.8
EL10Ac5g12672 Beta vulgaris HOM05D004703 ORTHO05D005801 2.1e-95 352.8 230 73.9
THA.LOC104806355 Tarenaya hassleriana HOM05D004703 ORTHO05D005801 2.8e-95 352.4 233 76.4
unitig_22.g5479 Utricularia gibba HOM05D004703 ORTHO05D005801 3.7e-95 352.1 235 72.8
ECA233G5834 Erigeron canadensis HOM05D004703 ORTHO05D005801 4.8e-95 351.7 231 73.6
HanXRQChr07g0186971 Helianthus annuus HOM05D004703 ORTHO05D005801 8.2e-95 350.9 231 73.2
Ah.12g053460 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.8e-94 349.7 232 73.7
Ah.12g057950 Amaranthus hybridus HOM05D004703 ORTHO05D005801 1.8e-94 349.7 232 73.7
PSO782G3959 Papaver somniferum HOM05D004703 ORTHO05D005801 2.4e-94 349.4 231 73.2
PSO478G3008 Papaver somniferum HOM05D004703 ORTHO05D005801 6.9e-94 347.8 231 72.7
PSO478G3534 Papaver somniferum HOM05D004703 ORTHO05D005801 3.4e-93 345.5 231 72.3
VMungo0251G1928 Vigna mungo HOM05D004703 ORTHO05D005801 3.4e-93 345.5 280 63.9
ClCG01G003390 Citrullus lanatus HOM05D004703 ORTHO05D005801 1.7e-92 343.2 248 69.8
HPP92_020651 Vanilla planifolia HOM05D004703 ORTHO05D005801 6.5e-92 341.3 231 71.0
A09p27170 Brassica napus HOM05D004703 ORTHO05D005801 7.2e-91 337.8 262 66.0
Cpa.g.sc29.48 Carica papaya HOM05D004703 ORTHO05D005801 3.3e-88 328.9 199 80.4
arahy.Tifrunner.gnm1.ann1.TVWC12 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-87 327.0 231 72.7
MELO3C005608.2 Cucumis melo HOM05D004703 ORTHO05D005801 1.5e-85 320.1 335 54.3
FAN08G2483 Fragaria x ananassa HOM05D004703 ORTHO05D005801 1.7e-84 316.6 197 77.2
Mapoly0093s0020 Marchantia polymorpha HOM05D004703 ORTHO05D005801 2.2e-84 316.2 242 63.6
CBR_g30593 Chara braunii HOM05D004703 ORTHO05D005801 6.5e-84 314.7 251 62.5
SalBow6G2643 Salvia bowleyana HOM05D004703 ORTHO05D005801 1.0e-81 307.4 194 77.8
Aa31LG9G10490 Aethionema arabicum HOM05D004703 ORTHO05D005801 2.6e-80 302.8 223 67.3
Pp3c15_11750 Physcomitrium patens HOM05D004703 ORTHO05D005801 4.5e-77 292.0 240 60.8
SMO140G0070 Selaginella moellendorffii HOM05D004703 ORTHO05D005801 2.6e-72 276.2 197 68.0
vmacro19246 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 7.7e-69 264.6 169 79.3
Nn1g00505 Nelumbo nucifera HOM05D004703 ORTHO05D005801 3.0e-65 252.7 157 79.6
Sc07g0009460 Simmondsia chinensis HOM05D004703 ORTHO05D005801 7.5e-64 248.1 157 77.1
arahy.Tifrunner.gnm1.ann1.HPWZ3I Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-63 247.3 157 77.1
Zm00001eb378400 Zea mays HOM05D004703 ORTHO05D005801 1.7e-63 246.9 157 75.8
RcHm_v2.0_Chr0c37g0502981 Rosa chinensis HOM05D004703 ORTHO05D005801 7.7e-61 238.0 161 71.4
AagrBONN_evm.TU.Sc2ySwM_344.4389 Anthoceros agrestis HOM05D004703 ORTHO05D005801 1.1e-54 217.6 182 60.4
MSTRG.25560 Avicennia marina HOM05D004703 ORTHO05D005801 2.7e-53 213.0 130 80.0
Sp6g05530 Schrenkiella parvula HOM05D004703 ORTHO05D005801 3.5e-53 212.6 133 76.7
BcaB04g18565 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-52 210.7 171 66.1
BcaB02g09202 Brassica carinata HOM05D004703 ORTHO05D005801 1.5e-51 207.2 171 64.9
Haze_13993 Corylus avellana HOM05D004703 ORTHO05D005801 4.2e-51 205.7 126 80.2
RcHm_v2.0_Chr4g0403961 Rosa chinensis HOM05D004703 ORTHO05D005801 5.5e-51 205.3 128 75.0
ATR0905G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 1.2e-48 197.6 129 73.6
arahy.Tifrunner.gnm1.ann1.R8Q162 Arachis hypogaea HOM05D004703 ORTHO05D005801 9.8e-48 194.5 159 65.4
BcaB02g11533 Brassica carinata HOM05D004703 ORTHO05D005801 1.3e-47 194.1 228 51.8
arahy.Tifrunner.gnm1.ann1.QD9SPH Arachis hypogaea HOM05D004703 ORTHO05D005801 2.2e-47 193.4 166 63.9
arahy.Tifrunner.gnm1.ann1.U0A30G Arachis hypogaea HOM05D004703 ORTHO05D005801 3.7e-47 192.6 162 64.8
arahy.Tifrunner.gnm1.ann1.0W2QGA Arachis hypogaea HOM05D004703 ORTHO05D005801 6.3e-47 191.8 156 66.7
arahy.Tifrunner.gnm1.ann1.DGE7ZD Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-46 190.7 175 60.6
arahy.Tifrunner.gnm1.ann1.TN8QBF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.4e-46 190.7 166 64.5
arahy.Tifrunner.gnm1.ann1.KBZV3C Arachis hypogaea HOM05D004703 ORTHO05D005801 3.1e-46 189.5 157 65.6
arahy.Tifrunner.gnm1.ann1.7IH5G2 Arachis hypogaea HOM05D004703 ORTHO05D005801 3.5e-45 186.0 157 65.0
arahy.Tifrunner.gnm1.ann1.J3Q2MP Arachis hypogaea HOM05D004703 ORTHO05D005801 2.9e-44 183.0 159 62.9
arahy.Tifrunner.gnm1.ann1.QT2LTC Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-39 167.5 144 64.6
BcaC01g04204 Brassica carinata HOM05D004703 ORTHO05D005801 2.9e-39 166.4 108 76.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 6.4e-39 165.2 157 60.5
arahy.Tifrunner.gnm1.ann1.UX21TB Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-36 157.5 159 57.9
arahy.Tifrunner.gnm1.ann1.YD44XK Arachis hypogaea HOM05D004703 ORTHO05D005801 1.3e-36 157.5 159 57.9
Zm00001eb279110 Zea mays HOM05D004703 ORTHO05D005801 1.3e-36 157.5 104 73.1
Zm00001eb113910 Zea mays HOM05D004703 ORTHO05D005801 5.6e-35 152.1 105 70.5
Cfa024731 Carpinus fangiana HOM05D004703 ORTHO05D005801 1.2e-34 151.0 227 43.2
arahy.Tifrunner.gnm1.ann1.XKXY1P Arachis hypogaea HOM05D004703 ORTHO05D005801 3.6e-34 149.4 94 80.9
arahy.Tifrunner.gnm1.ann1.L680XF Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-33 147.1 97 77.3
arahy.Tifrunner.gnm1.ann1.WGQ9HG Arachis hypogaea HOM05D004703 ORTHO05D005801 4.0e-33 146.0 123 65.0
arahy.Tifrunner.gnm1.ann1.QV6CQV Arachis hypogaea HOM05D004703 ORTHO05D005801 6.8e-33 145.2 122 64.8
ATR0251G001 Amborella trichopoda HOM05D004703 ORTHO05D005801 7.0e-30 135.2 88 72.7
arahy.Tifrunner.gnm1.ann1.0PA3BU Arachis hypogaea HOM05D004703 ORTHO05D005801 5.0e-28 129.0 118 61.0
RcHm_v2.0_Chr4g0425481 Rosa chinensis HOM05D004703 ORTHO05D005801 5.0e-28 129.0 123 58.5
vmacro19247 Vaccinium macrocarpon HOM05D004703 ORTHO05D005801 7.3e-27 125.2 80 77.5
arahy.Tifrunner.gnm1.ann1.DQS0N1 Arachis hypogaea HOM05D004703 ORTHO05D005801 1.5e-24 117.5 139 53.2
arahy.Tifrunner.gnm1.ann1.5L4UK7 Arachis hypogaea HOM05D004703 ORTHO05D005801 2.7e-21 106.7 162 42.6
arahy.Tifrunner.gnm1.ann1.IA6KQS Arachis hypogaea HOM05D004703 ORTHO05D005801 1.0e-20 104.8 70 77.1
CSS0004055 Camellia sinensis var. sinensis HOM05D004703 ORTHO05D005801 8.6e-20 101.7 71 76.1
arahy.Tifrunner.gnm1.ann1.2KDH9Q Arachis hypogaea HOM05D004703 ORTHO05D005801 3.3e-19 99.8 110 52.7
arahy.Tifrunner.gnm1.ann1.4J0L4L Arachis hypogaea HOM05D004703 ORTHO05D005801 1.8e-17 94.0 89 60.7
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-16 91.3 56 75.0
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 5.8e-08 62.4 34 76.5
arahy.Tifrunner.gnm1.ann1.RAR2PQ Arachis hypogaea HOM05D004703 ORTHO05D030873 2.2e-07 60.5 111 36.9
SalBow6G4210 Salvia bowleyana HOM05D004703 ORTHO05D005801 3.8e-07 59.7 36 75.0
MELO3C034534.2 Cucumis melo HOM05D004703 ORTHO05D005801 8.4e-07 58.5 38 68.4
arahy.Tifrunner.gnm1.ann1.54H2MY Arachis hypogaea HOM05D001155 ORTHO05D015979 1.4e-06 57.8 49 59.2
arahy.Tifrunner.gnm1.ann1.CXRB51 Arachis hypogaea HOM05D004703 ORTHO05D015979 1.4e-06 57.8 37 73.0
arahy.Tifrunner.gnm1.ann1.5AIV52 Arachis hypogaea HOM05D001155 ORTHO05D001080 4.2e-06 56.2 36 72.2


User provided reference genes

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