Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006769 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 3.7e-54 214.5 103 100.0
CSS0025047 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 6.0e-44 180.6 103 88.3
CSS0029439 Camellia sinensis var. sinensis HOM05D004691 ORTHO05D005552 6.0e-20 100.9 169 39.6
Dinv34779 Davidia involucrata HOM05D004691 ORTHO05D005552 3.9e-19 98.2 169 37.9
Migut.A00557 Erythranthe guttata HOM05D004691 ORTHO05D005552 1.1e-18 96.7 169 36.7
SGA_v2.0_scaffold89G27398 Striga asiatica HOM05D004691 ORTHO05D005552 1.1e-18 96.7 171 36.3
vmacro02596 Vaccinium macrocarpon HOM05D004691 ORTHO05D005552 1.1e-18 96.7 169 38.5
Hma1.2p1_0667F.1_g199750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 1.9e-18 95.9 169 37.3
Rhsim13G0027100 Rhododendron simsii HOM05D004691 ORTHO05D005552 2.5e-18 95.5 169 37.9
DCAR_002717 Daucus carota HOM05D004691 ORTHO05D005552 3.3e-18 95.1 169 38.5
Lj2A1168T23 Lonicera japonica HOM05D004691 ORTHO05D005552 3.3e-18 95.1 168 38.1
Lj9A529T34 Lonicera japonica HOM05D004691 ORTHO05D005552 3.3e-18 95.1 168 38.1
DCAR_018435 Daucus carota HOM05D004691 ORTHO05D005552 7.3e-18 94.0 169 37.3
MD11G1281700 Malus domestica HOM05D004691 ORTHO05D005552 7.3e-18 94.0 169 37.3
Actinidia00785 Actinidia chinensis HOM05D004691 ORTHO05D005552 9.6e-18 93.6 144 41.0
Potri.004G062600 Populus trichocarpa HOM05D004691 ORTHO05D005552 9.6e-18 93.6 169 37.3
ECA248G3453 Erigeron canadensis HOM05D004691 ORTHO05D005552 1.3e-17 93.2 169 36.7
Cpa.g.sc52.60 Carica papaya HOM05D004691 ORTHO05D005552 1.6e-17 92.8 169 36.7
Lalb_Chr06g0162871 Lupinus albus HOM05D004691 ORTHO05D005552 2.1e-17 92.4 169 36.1
MD03G1261300 Malus domestica HOM05D004691 ORTHO05D005552 2.1e-17 92.4 169 36.7
Nitab4.5_0002485g0080 Nicotiana tabacum HOM05D004691 ORTHO05D005552 2.1e-17 92.4 149 38.3
Thecc.01G274400 Theobroma cacao HOM05D004691 ORTHO05D005552 2.1e-17 92.4 169 36.1
Cfa006171 Carpinus fangiana HOM05D004691 ORTHO05D005552 2.8e-17 92.0 169 36.7
Phvul.001G053600 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 2.8e-17 92.0 169 36.1
PGR119G1056 Punica granatum HOM05D004691 ORTHO05D005552 2.8e-17 92.0 169 37.3
PGR119G1812 Punica granatum HOM05D004691 ORTHO05D005552 2.8e-17 92.0 169 37.3
CiPaw.08G107800 Carya illinoinensis HOM05D004691 ORTHO05D005552 3.6e-17 91.7 169 37.3
Duzib138G0407 Durio zibethinus HOM05D004691 ORTHO05D005552 3.6e-17 91.7 169 36.1
Manes.05G079200 Manihot esculenta HOM05D004691 ORTHO05D005552 3.6e-17 91.7 169 36.1
SGA_v2.0_scaffold96G29067 Striga asiatica HOM05D004691 ORTHO05D005552 3.6e-17 91.7 169 35.5
Phvul.001G054100 Phaseolus vulgaris HOM05D004691 ORTHO05D005552 6.2e-17 90.9 169 36.1
Prupe.1G577100 Prunus persica HOM05D004691 ORTHO05D005552 6.2e-17 90.9 169 35.5
VMungo0647G0910 Vigna mungo HOM05D004691 ORTHO05D005552 6.2e-17 90.9 169 35.5
CANSAT25G2296 Cannabis sativa HOM05D004691 ORTHO05D005552 8.1e-17 90.5 169 35.5
FAN20G3100 Fragaria x ananassa HOM05D004691 ORTHO05D005552 8.1e-17 90.5 157 37.6
FAN27G3192 Fragaria x ananassa HOM05D004691 ORTHO05D005552 8.1e-17 90.5 169 36.1
RcHm_v2.0_Chr6g0290451 Rosa chinensis HOM05D004691 ORTHO05D005552 8.1e-17 90.5 169 36.1
ATR0787G203 Amborella trichopoda HOM05D004691 ORTHO05D005552 1.1e-16 90.1 169 34.9
Cc08_g05170 Coffea canephora HOM05D004691 ORTHO05D005552 1.1e-16 90.1 169 36.1
COL.COLO4_11872 Corchorus olitorius HOM05D004691 ORTHO05D005552 1.1e-16 90.1 169 35.5
Dinv32905 Davidia involucrata HOM05D004691 ORTHO05D005552 1.1e-16 90.1 169 36.1
FAN24G2920 Fragaria x ananassa HOM05D004691 ORTHO05D005552 1.1e-16 90.1 169 35.5
unitig_748.g8144 Utricularia gibba HOM05D004691 ORTHO05D005552 1.1e-16 90.1 169 36.1
CsaV3_2G013570 Cucumis sativus L. HOM05D004691 ORTHO05D005552 1.4e-16 89.7 169 36.1
Glyma.17G206800 Glycine max HOM05D004691 ORTHO05D005552 1.4e-16 89.7 169 34.9
HanXRQChr08g0213401 Helianthus annuus HOM05D004691 ORTHO05D005552 1.4e-16 89.7 168 36.3
GSVIVG01001184001 Vitis vinifera HOM05D004691 ORTHO05D005552 1.8e-16 89.4 168 36.9
Ciclev10022626m.g Citrus clementina HOM05D004691 ORTHO05D005552 2.4e-16 89.0 169 35.5
FvH4_2g23200 Fragaria vesca HOM05D004691 ORTHO05D005552 2.4e-16 89.0 169 34.9
TPR.G13465 Trifolium pratense HOM05D004691 ORTHO05D005552 2.4e-16 89.0 169 34.9
MELO3C014296.2 Cucumis melo HOM05D004691 ORTHO05D005552 3.1e-16 88.6 169 35.5
Thhalv10005052m.g Eutrema salsugineum HOM05D004691 ORTHO05D005552 3.1e-16 88.6 169 36.7
Glyma.07G180400 Glycine max HOM05D004691 ORTHO05D005552 3.1e-16 88.6 169 34.9
SalBow4G0422 Salvia bowleyana HOM05D004691 ORTHO05D005552 3.1e-16 88.6 177 35.0
THA.LOC104823041 Tarenaya hassleriana HOM05D004691 ORTHO05D005552 3.1e-16 88.6 169 35.5
Gohir.D12G003600 Gossypium hirsutum HOM05D004691 ORTHO05D005552 5.3e-16 87.8 169 34.9
Gorai.008G003400 Gossypium raimondii HOM05D004691 ORTHO05D005552 5.3e-16 87.8 169 34.9
Medtr1g047130 Medicago truncatula HOM05D004691 ORTHO05D005552 5.3e-16 87.8 169 33.7
Sc17g0001280 Simmondsia chinensis HOM05D004691 ORTHO05D005552 5.3e-16 87.8 169 35.5
Aa31LG11G2940 Aethionema arabicum HOM05D004691 ORTHO05D005552 6.9e-16 87.4 169 36.1
TPR.G11285 Trifolium pratense HOM05D004691 ORTHO05D005552 6.9e-16 87.4 169 34.3
TWI75G0960 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 6.9e-16 87.4 175 34.3
Sed0017796 Sechium edule HOM05D004691 ORTHO05D005552 9.0e-16 87.0 169 36.1
Hund12255 Selenicereus undatus HOM05D004691 ORTHO05D005552 9.0e-16 87.0 168 36.9
Eucgr.K03344 Eucalyptus grandis HOM05D004691 ORTHO05D005552 1.5e-15 86.3 169 34.9
Lsat_1_v5_gn_5_187201 Lactuca sativa HOM05D004691 ORTHO05D005552 1.5e-15 86.3 163 36.2
BolC7t44929H Brassica oleracea HOM05D004691 ORTHO05D005552 2.0e-15 85.9 169 36.1
Ca_01504_v3 Cicer arietinum L. HOM05D004691 ORTHO05D005552 2.0e-15 85.9 169 33.7
ClCG07G000390 Citrullus lanatus HOM05D004691 ORTHO05D005552 2.0e-15 85.9 165 35.8
Lj1g0022890 Lotus japonicus HOM05D004691 ORTHO05D005552 2.0e-15 85.9 169 33.7
AL6G34810 Arabidopsis lyrata HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
AT5G23535 Arabidopsis thaliana HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
BcaB04g19862 Brassica carinata HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
BcaC04g23501 Brassica carinata HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
A06p34500 Brassica napus HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
A09p06900 Brassica napus HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
C07p44050 Brassica napus HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
C09p07630 Brassica napus HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
BolC9t53681H Brassica oleracea HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
BraA06t26378Z Brassica rapa HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
BraA09t36337Z Brassica rapa HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
Psat6g047600 Pisum sativum HOM05D004691 ORTHO05D005552 2.6e-15 85.5 160 34.4
Sp2g23660 Schrenkiella parvula HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 35.5
Solyc08g075850.3 Solanum lycopersicum HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 34.3
Sopen08g024490 Solanum pennellii HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 34.3
PGSC0003DMG400030873 Solanum tuberosum HOM05D004691 ORTHO05D005552 2.6e-15 85.5 169 34.3
AL4G15050 Arabidopsis lyrata HOM05D004691 ORTHO05D005552 3.4e-15 85.1 169 35.5
arahy.Tifrunner.gnm1.ann1.DJ1VY2 Arachis hypogaea HOM05D004691 ORTHO05D005552 3.4e-15 85.1 169 36.1
CANSAT80G0426 Cannabis sativa HOM05D004691 ORTHO05D005552 3.4e-15 85.1 169 33.7
Carub.0006s2131 Capsella rubella HOM05D004691 ORTHO05D005552 3.4e-15 85.1 169 35.5
CARHR189990 Cardamine hirsuta HOM05D004691 ORTHO05D005552 3.4e-15 85.1 169 35.5
Sabra04G0041500 Salix brachista HOM05D004691 ORTHO05D005552 3.4e-15 85.1 169 35.5
arahy.Tifrunner.gnm1.ann1.2S5JQC Arachis hypogaea HOM05D004691 ORTHO05D005552 4.4e-15 84.7 169 35.5
arahy.Tifrunner.gnm1.ann1.3Q9Y1V Arachis hypogaea HOM05D004691 ORTHO05D005552 4.4e-15 84.7 169 35.5
arahy.Tifrunner.gnm1.ann1.GXX04Y Arachis hypogaea HOM05D004691 ORTHO05D005552 4.4e-15 84.7 169 35.5
Prupe.8G237600 Prunus persica HOM05D004691 ORTHO05D005552 4.4e-15 84.7 169 33.7
Aqoxy5G00433 Aquilegia oxysepala HOM05D004691 ORTHO05D005552 7.6e-15 84.0 168 34.5
Lj3A731T61 Lonicera japonica HOM05D004691 ORTHO05D005552 9.9e-15 83.6 169 33.7
Nitab4.5_0000108g0400 Nicotiana tabacum HOM05D004691 ORTHO05D005552 1.7e-14 82.8 169 33.1
EL10Ac4g08388 Beta vulgaris HOM05D004691 ORTHO05D005552 2.9e-14 82.0 169 33.7
TAR260G0003 Trochodendron aralioides HOM05D004691 ORTHO05D005552 4.9e-14 81.3 169 32.0
CDE04G1639 Ceratophyllum demersum HOM05D004691 ORTHO05D005552 6.4e-14 80.9 168 33.9
PGSC0003DMG400017984 Solanum tuberosum HOM05D004691 ORTHO05D005552 8.4e-14 80.5 169 32.5
Os11g0139100 Oryza sativa ssp. japonica HOM05D004691 ORTHO05D005552 1.1e-13 80.1 169 34.3
PSO675G3171 Papaver somniferum HOM05D004691 ORTHO05D005552 2.4e-13 79.0 168 31.5
Peaxi162Scf00408g00833 Petunia axillaris HOM05D004691 ORTHO05D005552 4.2e-13 78.2 169 32.5
Hma1.2p1_0525F.1_g172750 Hydrangea macrophylla HOM05D004691 ORTHO05D005552 5.4e-13 77.8 104 45.2
PSO761G0020 Papaver somniferum HOM05D004691 ORTHO05D005552 5.4e-13 77.8 168 33.9
Oeu037306.1 Olea europaea HOM05D004691 ORTHO05D005552 7.1e-13 77.4 64 59.4
PSO017G2306 Papaver somniferum HOM05D004691 ORTHO05D005552 7.1e-13 77.4 168 31.0
Sed0022085 Sechium edule HOM05D004691 ORTHO05D005552 9.3e-13 77.0 193 30.6
Zm00001eb196350 Zea mays HOM05D004691 ORTHO05D005552 9.3e-13 77.0 169 32.5
Os12g0135900 Oryza sativa ssp. japonica HOM05D004691 ORTHO05D005552 1.2e-12 76.6 169 33.7
Duzib133G0007 Durio zibethinus HOM05D004691 ORTHO05D005552 1.6e-12 76.3 64 60.9
Haze_24303 Corylus avellana HOM05D004691 ORTHO05D005552 2.1e-12 75.9 62 62.9
Gohir.A12G003900 Gossypium hirsutum HOM05D004691 ORTHO05D005552 2.7e-12 75.5 64 59.4
Glyma.02G145800 Glycine max HOM05D004691 ORTHO05D005552 3.5e-12 75.1 64 59.4
Nn1g02379 Nelumbo nucifera HOM05D004691 ORTHO05D005552 3.5e-12 75.1 64 62.5
FvH4_2g22413 Fragaria vesca HOM05D004691 ORTHO05D005552 4.6e-12 74.7 64 57.8
SalBow8G2642 Salvia bowleyana HOM05D004691 ORTHO05D005552 4.6e-12 74.7 64 60.9
Lj5g0022765 Lotus japonicus HOM05D004691 ORTHO05D005552 6.0e-12 74.3 64 59.4
Nitab4.5_0003992g0020 Nicotiana tabacum HOM05D004691 ORTHO05D005552 6.0e-12 74.3 167 29.9
QL02p011400 Quercus lobata HOM05D004691 ORTHO05D005552 6.0e-12 74.3 64 59.4
Psat6g046920 Pisum sativum HOM05D004691 ORTHO05D005552 7.8e-12 73.9 64 56.2
TAR362G0310 Trochodendron aralioides HOM05D004691 ORTHO05D005552 2.3e-11 72.4 64 57.8
EL10Ac4g08386 Beta vulgaris HOM05D004691 ORTHO05D005552 3.0e-11 72.0 195 28.7
CAN.G1427.9 Capsicum annuum HOM05D004691 ORTHO05D005552 3.9e-11 71.6 64 56.2
RcHm_v2.0_Chr1g0329981 Rosa chinensis HOM05D004691 ORTHO05D005552 3.9e-11 71.6 162 32.7
TWI18G0899 Tripterygium wilfordii HOM05D004691 ORTHO05D005552 6.6e-11 70.9 64 54.7
EL10Ac2g03130 Beta vulgaris HOM05D004691 ORTHO05D005552 1.1e-10 70.1 195 28.7
PSO210G7297 Papaver somniferum HOM05D004691 ORTHO05D005552 1.5e-10 69.7 64 54.7
RcHm_v2.0_Chr1g0329861 Rosa chinensis HOM05D004691 ORTHO05D005552 3.3e-10 68.6 68 52.9
HPP92_004579 Vanilla planifolia HOM05D004691 ORTHO05D005552 7.3e-10 67.4 64 56.2
SEGI_08900 Sequoiadendron giganteum HOM05D004691 ORTHO05D005552 1.6e-09 66.2 64 53.1
AUR62038661 Chenopodium quinoa HOM05D004691 ORTHO05D005552 1.8e-08 62.8 126 35.7
Lsat_1_v5_gn_9_49380 Lactuca sativa HOM05D004691 ORTHO05D005552 4.0e-08 61.6 138 32.6
Mapoly0064s0052 Marchantia polymorpha HOM05D004691 ORTHO05D005552 5.8e-07 57.8 64 45.3
CBR_g54238 Chara braunii HOM05D004691 ORTHO05D005552 9.9e-07 57.0 66 45.5
AagrBONN_evm.TU.Sc2ySwM_117.3924 Anthoceros agrestis HOM05D004691 ORTHO05D005552 2.2e-06 55.8 64 48.4
AUR62018176 Chenopodium quinoa HOM05D004691 ORTHO05D005552 4.9e-06 54.7 149 30.2
Oeu017325.1 Olea europaea HOM05D004691 ORTHO05D005552 4.9e-06 54.7 27 85.2
PGR119G0015 Punica granatum HOM05D004691 ORTHO05D005552 4.9e-06 54.7 25 92.0
Pp3c2_11670 Physcomitrium patens HOM05D004691 ORTHO05D005552 6.4e-06 54.3 64 50.0


User provided reference genes

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