Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 6.5e-221 770.4 380 100.0
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.7e-192 674.9 401 84.3
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 2.6e-185 652.1 379 86.5
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 5.0e-181 637.9 381 82.4
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.2e-179 633.3 379 82.6
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 5.2e-178 627.9 382 81.2
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 2.6e-177 625.5 377 81.2
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 5.8e-177 624.4 404 76.0
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 9.8e-177 623.6 380 79.2
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 2.9e-176 622.1 380 80.5
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 4.9e-176 621.3 377 80.6
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 1.1e-175 620.2 380 82.1
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.1e-175 620.2 380 80.8
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 9.2e-175 617.1 381 80.8
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 1.6e-174 616.3 380 79.7
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 2.0e-174 615.9 380 80.0
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 4.6e-174 614.8 384 79.7
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 4.6e-174 614.8 381 80.3
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 6.0e-174 614.4 381 79.5
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 7.8e-174 614.0 379 79.4
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.0e-173 613.6 380 80.0
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 1.3e-173 613.2 381 80.1
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.7e-173 612.8 375 80.5
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 3.9e-173 611.7 380 78.9
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 6.6e-173 610.9 381 79.3
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 8.6e-173 610.5 381 79.3
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 1.9e-172 609.4 382 79.8
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.3e-172 608.2 381 79.0
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 5.6e-172 607.8 381 80.1
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 9.5e-172 607.1 380 79.2
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 9.5e-172 607.1 379 79.9
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 6.2e-171 604.4 379 80.5
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 1.4e-170 603.2 411 75.7
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 3.1e-170 602.1 382 79.1
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 4.0e-170 601.7 381 79.0
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.2e-169 600.1 379 77.6
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.2e-169 600.1 381 78.5
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 1.5e-169 599.7 377 80.9
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 2.0e-169 599.4 380 78.4
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.4e-169 598.2 395 75.9
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 4.4e-169 598.2 382 78.3
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.2e-168 595.9 346 82.7
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 2.2e-168 595.9 381 77.2
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 3.7e-168 595.1 382 77.5
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 6.4e-168 594.3 380 76.8
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 1.4e-167 593.2 379 77.3
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.4e-167 593.2 380 77.9
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 4.1e-167 591.7 381 77.4
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 5.4e-167 591.3 384 75.3
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 9.2e-167 590.5 319 88.7
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.2e-166 590.1 372 78.5
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 1.6e-166 589.7 382 77.5
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.6e-166 589.7 382 75.4
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 2.7e-166 589.0 383 77.5
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 3.5e-166 588.6 382 75.7
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 7.8e-166 587.4 396 75.0
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 6.6e-165 584.3 372 76.1
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 6.6e-165 584.3 380 75.5
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 6.6e-165 584.3 381 76.1
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 8.6e-165 583.9 384 74.5
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 1.1e-164 583.6 382 74.9
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 5.6e-164 581.3 378 76.2
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.8e-163 578.9 377 74.0
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 2.8e-163 578.9 318 85.5
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 3.6e-163 578.6 383 73.1
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 6.2e-163 577.8 382 73.3
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 3.1e-162 575.5 337 81.6
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 3.4e-161 572.0 381 75.9
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 7.5e-161 570.9 378 75.1
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 7.5e-161 570.9 324 84.6
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 9.9e-161 570.5 380 73.9
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.2e-160 569.3 382 72.3
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 4.9e-160 568.2 379 74.9
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 6.4e-160 567.8 382 72.8
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.4e-159 566.6 382 73.0
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 2.4e-159 565.8 382 71.7
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 2.4e-159 565.8 383 73.1
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 9.2e-159 563.9 382 71.7
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-158 563.5 382 72.8
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 1.6e-158 563.1 383 72.1
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 4.6e-158 561.6 382 72.3
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 4.6e-158 561.6 382 72.3
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 6.0e-158 561.2 403 70.2
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 6.0e-158 561.2 381 71.7
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 7.8e-158 560.8 306 86.9
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 7.8e-158 560.8 339 78.8
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-157 560.5 382 72.5
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 1.0e-157 560.5 382 72.5
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 2.3e-157 559.3 381 71.4
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 3.9e-157 558.5 319 81.2
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 5.1e-157 558.1 381 71.4
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 8.6e-157 557.4 342 76.3
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 7.3e-156 554.3 379 71.0
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-155 553.1 379 71.2
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 2.1e-155 552.7 317 82.3
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 2.8e-155 552.4 378 73.0
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 4.0e-154 548.5 389 71.5
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 5.2e-154 548.1 380 70.0
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 4.4e-153 545.0 320 79.4
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 5.8e-153 544.7 380 70.5
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 4.9e-152 541.6 351 77.5
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 4.9e-152 541.6 379 69.9
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 6.4e-152 541.2 310 81.6
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 6.4e-152 541.2 386 72.5
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-151 540.0 382 69.6
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.4e-151 538.1 323 77.1
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 1.0e-149 533.9 332 75.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 1.5e-148 530.0 329 77.2
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 9.6e-148 527.3 348 78.7
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 1.2e-147 526.9 380 68.7
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.1e-147 526.2 320 77.5
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 3.6e-147 525.4 379 69.7
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 6.2e-147 524.6 350 75.4
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.4e-146 522.7 322 75.8
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 2.4e-146 522.7 379 70.7
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 2.6e-145 519.2 304 77.3
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.4e-145 518.8 324 79.6
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 4.4e-145 518.5 364 70.6
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 1.3e-144 516.9 350 75.7
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.7e-144 516.5 310 76.1
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 1.2e-142 510.4 374 69.5
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 1.6e-142 510.0 315 75.6
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 3.9e-141 505.4 350 74.0
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 1.9e-135 486.5 326 74.2
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 6.7e-133 478.0 310 72.3
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 1.8e-130 469.9 382 63.9
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 3.1e-130 469.2 298 71.8
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 8.4e-128 461.1 276 78.3
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.9e-127 459.9 357 65.8
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 4.2e-127 458.8 326 73.0
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 1.1e-124 450.7 241 88.0
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 7.4e-124 448.0 296 67.2
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 2.2e-120 436.4 289 74.4
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 1.4e-119 433.7 290 77.9
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.1e-118 429.9 259 82.2
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 6.7e-117 424.9 317 61.5
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 5.7e-116 421.8 329 60.8
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 2.8e-115 419.5 305 63.9
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.7e-110 402.9 235 87.7
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 9.1e-106 387.9 327 57.2
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.4e-105 386.0 380 56.1
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 4.5e-105 385.6 234 75.6
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 2.9e-104 382.9 298 60.7
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.3e-96 357.5 198 83.8
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 6.5e-96 355.1 197 84.3
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.1e-92 344.4 234 70.5
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 7.0e-90 335.1 225 74.7
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 5.5e-79 298.9 220 71.4
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 2.8e-75 286.6 366 45.6
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 2.9e-72 276.6 219 64.4
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 6.6e-72 275.4 344 43.6
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 1.4e-69 267.7 299 48.8
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 2.6e-68 263.5 324 43.8
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 9.8e-68 261.5 309 45.6
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 8.9e-53 211.8 153 71.2
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 3.4e-52 209.9 183 64.5
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 2.9e-51 206.8 114 82.5
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.6e-44 183.7 289 39.1
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 6.8e-37 159.1 94 84.0
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 1.2e-36 158.3 92 84.8
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 1.2e-36 158.3 131 64.9
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 9.9e-36 155.2 131 64.1
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 1.3e-35 154.8 92 82.6
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 1.3e-35 154.8 94 81.9
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 8.4e-35 152.1 131 62.6
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 1.3e-32 144.8 98 77.6
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 4.8e-30 136.3 76 82.9
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 2.0e-28 131.0 66 92.4
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 9.9e-28 128.6 77 77.9
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 3.0e-24 117.1 341 27.9
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.1e-23 115.2 63 79.4
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 2.5e-23 114.0 133 50.4
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 3.3e-23 113.6 92 67.4
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.3e-22 111.7 101 59.4
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 6.2e-22 109.4 114 55.3
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 4.9e-19 99.8 61 72.1
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.8e-16 91.3 51 82.4
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 1.1e-15 88.6 244 30.7
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 1.5e-12 78.2 47 78.7
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 2.6e-12 77.4 42 83.3
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 3.4e-12 77.0 75 53.3
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 4.2e-10 70.1 42 73.8
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 4.2e-10 70.1 42 73.8
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 1.3e-08 65.1 38 84.2
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 2.3e-08 64.3 34 91.2
Cre01.g008891 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D031137 6.2e-06 56.2 58 41.4


User provided reference genes

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