Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006752 Camellia sinensis var. sinensis HOM05D001691 ORTHO05D111688 1.9e-147 526.2 335 100.0
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 5.1e-20 102.8 129 45.0
CSS0049892 Camellia sinensis var. sinensis HOM05D001691 ORTHO05D001704 1.9e-19 100.9 65 81.5
Actinidia28073 Actinidia chinensis HOM05D001691 ORTHO05D001704 2.2e-15 87.4 65 70.8
vmacro19909 Vaccinium macrocarpon HOM05D001691 ORTHO05D001704 5.0e-15 86.3 65 69.2
CAN.G199.27 Capsicum annuum HOM05D001691 ORTHO05D001704 7.2e-14 82.4 60 66.7
TAR376G0830 Trochodendron aralioides HOM05D001691 ORTHO05D001704 7.2e-14 82.4 54 72.2
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 1.2e-13 81.6 75 61.3
Nitab4.5_0010488g0010 Nicotiana tabacum HOM05D001691 ORTHO05D001704 1.2e-13 81.6 65 64.6
Rhsim05G0111600 Rhododendron simsii HOM05D001691 ORTHO05D001704 2.7e-13 80.5 65 66.2
Rhsim05G0111800 Rhododendron simsii HOM05D001691 ORTHO05D001704 2.7e-13 80.5 65 66.2
Nitab4.5_0000786g0070 Nicotiana tabacum HOM05D001691 ORTHO05D001704 6.1e-13 79.3 65 61.5
Rhsim08G0076600 Rhododendron simsii HOM05D001691 ORTHO05D001704 1.0e-12 78.6 70 62.9
Migut.F01867 Erythranthe guttata HOM05D001691 ORTHO05D001704 1.4e-12 78.2 65 61.5
Lj5A243T102 Lonicera japonica HOM05D001691 ORTHO05D001704 1.4e-12 78.2 79 58.2
Cfa020776 Carpinus fangiana HOM05D001691 ORTHO05D001704 1.8e-12 77.8 75 54.7
Oeu050907.1 Olea europaea HOM05D001691 ORTHO05D001704 2.3e-12 77.4 65 60.0
ECA236G3159 Erigeron canadensis HOM05D001691 ORTHO05D001704 3.0e-12 77.0 79 53.2
Haze_19116 Corylus avellana HOM05D001691 ORTHO05D001704 3.9e-12 76.6 75 53.3
Haze_19120 Corylus avellana HOM05D001691 ORTHO05D001704 3.9e-12 76.6 75 53.3
CiPaw.01G106800 Carya illinoinensis HOM05D001691 ORTHO05D001704 5.1e-12 76.3 65 56.9
DCAR_001806 Daucus carota HOM05D001691 ORTHO05D001704 5.1e-12 76.3 59 67.8
Nn1g06330 Nelumbo nucifera HOM05D001691 ORTHO05D001704 5.1e-12 76.3 65 60.0
MD16G1060600 Malus domestica HOM05D001691 ORTHO05D001704 6.7e-12 75.9 59 66.1
Peaxi162Scf00152g01231 Petunia axillaris HOM05D001691 ORTHO05D001704 6.7e-12 75.9 65 60.0
PGSC0003DMG400026122 Solanum tuberosum HOM05D001691 ORTHO05D001704 6.7e-12 75.9 65 63.1
Prupe.1G287700 Prunus persica HOM05D001691 ORTHO05D001704 1.5e-11 74.7 59 64.4
Sc19g0003220 Simmondsia chinensis HOM05D001691 ORTHO05D001704 2.0e-11 74.3 75 52.0
Solyc06g065500.4 Solanum lycopersicum HOM05D001691 ORTHO05D001704 2.0e-11 74.3 65 60.0
Sopen06g023990 Solanum pennellii HOM05D001691 ORTHO05D001704 2.0e-11 74.3 65 60.0
SGA_v2.0_scaffold243G44279 Striga asiatica HOM05D001691 ORTHO05D001704 2.6e-11 73.9 59 62.7
SGA_v2.0_scaffold88G27195 Striga asiatica HOM05D001691 ORTHO05D001704 2.6e-11 73.9 59 62.7
MSTRG.27399 Avicennia marina HOM05D001691 ORTHO05D001704 3.3e-11 73.6 59 59.3
Lsat_1_v5_gn_7_80520 Lactuca sativa HOM05D001691 ORTHO05D001704 3.3e-11 73.6 65 60.0
AUR62041623 Chenopodium quinoa HOM05D001691 ORTHO05D001704 7.4e-11 72.4 65 56.9
Sabra18G0006800 Salix brachista HOM05D001691 ORTHO05D001704 7.4e-11 72.4 69 52.2
Nn1g09667 Nelumbo nucifera HOM05D001691 ORTHO05D001704 9.7e-11 72.0 59 61.0
TWI23G1053 Tripterygium wilfordii HOM05D001691 ORTHO05D001704 9.7e-11 72.0 75 49.3
Cc02_g21920 Coffea canephora HOM05D001691 ORTHO05D001704 1.3e-10 71.6 59 59.3
Ah.07g202400 Amaranthus hybridus HOM05D001691 ORTHO05D001704 1.7e-10 71.2 70 55.7
MELO3C010072.2 Cucumis melo HOM05D001691 ORTHO05D001704 1.7e-10 71.2 75 53.3
Ciclev10031025m.g Citrus clementina HOM05D001691 ORTHO05D001704 2.2e-10 70.9 75 49.3
HanXRQChr11g0337661 Helianthus annuus HOM05D001691 ORTHO05D001704 2.2e-10 70.9 69 55.1
QL07p014078 Quercus lobata HOM05D001691 ORTHO05D001704 2.2e-10 70.9 69 56.5
Atru.chr2.3501 Acer truncatum HOM05D001691 ORTHO05D001704 2.8e-10 70.5 59 57.6
ClCG03G010870 Citrullus lanatus HOM05D001691 ORTHO05D001704 2.8e-10 70.5 75 52.0
Glyma.17G240000 Glycine max HOM05D001691 ORTHO05D001704 3.7e-10 70.1 59 55.9
Lalb_Chr22g0351471 Lupinus albus HOM05D001691 ORTHO05D001704 3.7e-10 70.1 65 53.8
Potri.004G074100 Populus trichocarpa HOM05D001691 ORTHO05D001704 3.7e-10 70.1 71 52.1
Potri.017G144900 Populus trichocarpa HOM05D001691 ORTHO05D001704 3.7e-10 70.1 69 50.7
AUR62025547 Chenopodium quinoa HOM05D001691 ORTHO05D001704 6.3e-10 69.3 65 55.4
CsaV3_1G044620 Cucumis sativus L. HOM05D001691 ORTHO05D001704 6.3e-10 69.3 65 55.4
Eucgr.H00022 Eucalyptus grandis HOM05D001691 ORTHO05D001704 6.3e-10 69.3 75 46.7
CANSAT11G1708 Cannabis sativa HOM05D001691 ORTHO05D001704 8.2e-10 68.9 75 52.0
Lj3g0007883 Lotus japonicus HOM05D001691 ORTHO05D001704 8.2e-10 68.9 67 50.7
Manes.02G138600 Manihot esculenta HOM05D001691 ORTHO05D001704 8.2e-10 68.9 78 43.6
SalBow1G6097 Salvia bowleyana HOM05D001691 ORTHO05D001704 8.2e-10 68.9 65 55.4
Sed0014893 Sechium edule HOM05D001691 ORTHO05D001704 8.2e-10 68.9 65 55.4
CSS0021492 Camellia sinensis var. sinensis HOM05D001691 ORTHO05D001704 1.1e-09 68.6 41 87.8
Phvul.001G023800 Phaseolus vulgaris HOM05D001691 ORTHO05D001704 1.1e-09 68.6 65 50.8
Sabra04G0048900 Salix brachista HOM05D001691 ORTHO05D001704 1.4e-09 68.2 69 53.6
Sabra15G0083100 Salix brachista HOM05D001691 ORTHO05D001704 1.4e-09 68.2 69 49.3
VMungo0647G2021 Vigna mungo HOM05D001691 ORTHO05D001704 1.4e-09 68.2 65 50.8
CiPaw.02G057700 Carya illinoinensis HOM05D001691 ORTHO05D001704 1.8e-09 67.8 75 48.0
Migut.F02111 Erythranthe guttata HOM05D001691 ORTHO05D001704 1.8e-09 67.8 76 47.4
Glyma.14G084800 Glycine max HOM05D001691 ORTHO05D001704 1.8e-09 67.8 65 50.8
arahy.Tifrunner.gnm1.ann1.2HQ2B3 Arachis hypogaea HOM05D001691 ORTHO05D001704 2.4e-09 67.4 80 46.2
CDE06G2292 Ceratophyllum demersum HOM05D001691 ORTHO05D001704 2.4e-09 67.4 93 41.9
Duzib106G1573 Durio zibethinus HOM05D001691 ORTHO05D001704 2.4e-09 67.4 65 52.3
PSO170G6642 Papaver somniferum HOM05D001691 ORTHO05D001704 3.1e-09 67.0 73 50.7
PGR042G2492 Punica granatum HOM05D001691 ORTHO05D001704 4.1e-09 66.6 81 48.1
arahy.Tifrunner.gnm1.ann1.JT30L6 Arachis hypogaea HOM05D001691 ORTHO05D001704 5.3e-09 66.2 80 45.0
Cpa.g.sc36.22 Carica papaya HOM05D001691 ORTHO05D001704 5.3e-09 66.2 65 53.8
PSO528G0159 Papaver somniferum HOM05D001691 ORTHO05D001704 5.3e-09 66.2 81 46.9
EL10Ac2g03520 Beta vulgaris HOM05D001691 ORTHO05D001704 9.1e-09 65.5 59 59.3
Nn5g28485 Nelumbo nucifera HOM05D001691 ORTHO05D001704 1.2e-08 65.1 48 64.6
THA.LOC104800971 Tarenaya hassleriana HOM05D001691 ORTHO05D001704 1.2e-08 65.1 66 53.0
FAN17G0506 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.5e-08 64.7 67 58.2
Phvul.005G125600 Phaseolus vulgaris HOM05D001691 ORTHO05D001704 1.5e-08 64.7 64 51.6
Hund10086 Selenicereus undatus HOM05D001691 ORTHO05D001704 2.0e-08 64.3 54 63.0
FAN22G0879 Fragaria x ananassa HOM05D001691 ORTHO05D002350 2.6e-08 63.9 67 56.7
RcHm_v2.0_Chr4g0438251 Rosa chinensis HOM05D001691 ORTHO05D001704 2.6e-08 63.9 67 56.7
TPR.G37147 Trifolium pratense HOM05D001691 ORTHO05D001704 2.6e-08 63.9 59 52.5
EL10Ac7g15800 Beta vulgaris HOM05D001691 ORTHO05D001704 3.4e-08 63.5 77 48.1
Aa31LG5G4310 Aethionema arabicum HOM05D001691 ORTHO05D001704 5.9e-08 62.8 65 47.7
Ah.06g184380 Amaranthus hybridus HOM05D001691 ORTHO05D001704 5.9e-08 62.8 72 48.6
FvH4_4g29971 Fragaria vesca HOM05D001691 ORTHO05D001704 7.7e-08 62.4 67 55.2
PGR142G0568 Punica granatum HOM05D001691 ORTHO05D001704 7.7e-08 62.4 59 52.5
ATR0800G162 Amborella trichopoda HOM05D001691 ORTHO05D001704 1.0e-07 62.0 65 49.2
Aqoxy6G00286 Aquilegia oxysepala HOM05D001691 ORTHO05D001704 1.0e-07 62.0 70 45.7
FvH4_3g24550 Fragaria vesca HOM05D001691 ORTHO05D001704 1.0e-07 62.0 59 50.8
FAN11G1240 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.0e-07 62.0 59 50.8
unitig_52.g17511 Utricularia gibba HOM05D001691 ORTHO05D001704 1.0e-07 62.0 58 51.7
EL10Ac6g15404 Beta vulgaris HOM05D001691 ORTHO05D001704 1.3e-07 61.6 77 46.8
AUR62009785 Chenopodium quinoa HOM05D001691 ORTHO05D001704 1.3e-07 61.6 77 49.4
FAN16G0058 Fragaria x ananassa HOM05D001691 ORTHO05D001704 1.3e-07 61.6 59 49.2
Thecc.04G023600 Theobroma cacao HOM05D001691 ORTHO05D001704 1.3e-07 61.6 65 47.7
Glyma.13G317800 Glycine max HOM05D001691 ORTHO05D001704 1.7e-07 61.2 64 48.4
Gohir.D10G202500 Gossypium hirsutum HOM05D001691 ORTHO05D001704 1.7e-07 61.2 79 44.3
Gorai.011G227200 Gossypium raimondii HOM05D001691 ORTHO05D001704 1.7e-07 61.2 79 44.3
Medtr2g101360 Medicago truncatula HOM05D001691 ORTHO05D001704 1.7e-07 61.2 78 44.9
RcHm_v2.0_Chr5g0043991 Rosa chinensis HOM05D001691 ORTHO05D001704 1.7e-07 61.2 59 50.8
Psat1g005400 Pisum sativum HOM05D001691 ORTHO05D001704 2.2e-07 60.8 59 52.5
PGR119G0166 Punica granatum HOM05D001691 ORTHO05D001704 3.8e-07 60.1 54 51.9
Gohir.A10G195600 Gossypium hirsutum HOM05D001691 ORTHO05D001704 5.0e-07 59.7 79 43.0
Ca_01152_v3 Cicer arietinum L. HOM05D001691 ORTHO05D001704 6.5e-07 59.3 65 41.5
HPP92_003127 Vanilla planifolia HOM05D001691 ORTHO05D001704 6.5e-07 59.3 61 49.2
FAN25G3505 Fragaria x ananassa HOM05D001691 ORTHO05D001704 8.5e-07 58.9 59 49.2
BcaB02g10482 Brassica carinata HOM05D001691 ORTHO05D001704 1.4e-06 58.2 65 47.7
C04p17410 Brassica napus HOM05D001691 ORTHO05D001704 1.4e-06 58.2 65 47.7
BolC4t23291H Brassica oleracea HOM05D001691 ORTHO05D001704 1.4e-06 58.2 65 47.7
ClCG10G005810 Citrullus lanatus HOM05D001691 ORTHO05D001704 1.9e-06 57.8 59 47.5
SGA_v2.0_scaffold71G23838 Striga asiatica HOM05D001691 ORTHO05D001704 1.9e-06 57.8 60 48.3
MD13G1062300 Malus domestica HOM05D001691 ORTHO05D001704 2.5e-06 57.4 50 58.0
Nn3g19761 Nelumbo nucifera HOM05D001691 ORTHO05D001704 2.5e-06 57.4 59 49.2
SEGI_11680 Sequoiadendron giganteum HOM05D001691 ORTHO05D001704 2.5e-06 57.4 64 43.8
AL4G27590 Arabidopsis lyrata HOM05D001691 ORTHO05D001704 3.2e-06 57.0 65 46.2
Dinv42571 Davidia involucrata HOM05D001691 ORTHO05D001704 3.2e-06 57.0 79 41.8
VMungo1309G1966 Vigna mungo HOM05D001691 ORTHO05D001704 3.2e-06 57.0 64 50.0
A05p13000 Brassica napus HOM05D001691 ORTHO05D001704 4.2e-06 56.6 65 46.2
Sc12g0004360 Simmondsia chinensis HOM05D001691 ORTHO05D001704 4.2e-06 56.6 74 47.3
BraA05t20240Z Brassica rapa HOM05D001691 ORTHO05D001704 5.5e-06 56.2 65 46.2
CANSAT54G1904 Cannabis sativa HOM05D001691 ORTHO05D001704 5.5e-06 56.2 54 50.0
CARHR125990 Cardamine hirsuta HOM05D001691 ORTHO05D001704 5.5e-06 56.2 65 46.2
CiPaw.13G138200 Carya illinoinensis HOM05D001691 ORTHO05D001704 5.5e-06 56.2 54 50.0
Glyma.12G183200 Glycine max HOM05D001691 ORTHO05D001704 5.5e-06 56.2 64 43.8
Oeu038981.1 Olea europaea HOM05D001691 ORTHO05D001704 5.5e-06 56.2 79 41.8
THA.LOC104804596 Tarenaya hassleriana HOM05D001691 ORTHO05D001704 5.5e-06 56.2 72 44.4
Zm00001eb140030 Zea mays HOM05D001691 ORTHO05D001704 5.5e-06 56.2 54 48.1
Lj3g0016547 Lotus japonicus HOM05D001691 ORTHO05D001704 7.2e-06 55.8 114 36.8
Sed0013742 Sechium edule HOM05D001691 ORTHO05D001704 7.2e-06 55.8 59 49.2
SEGI_35417 Sequoiadendron giganteum HOM05D001691 ORTHO05D001704 7.2e-06 55.8 59 44.1
GSVIVG01015365001 Vitis vinifera HOM05D001691 ORTHO05D001704 9.4e-06 55.5 59 44.1


User provided reference genes

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