Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006749 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004782 1.2e-88 329.7 156 100.0
Actinidia19246 Actinidia chinensis HOM05D000921 ORTHO05D004782 6.5e-26 121.3 154 46.1
Dinv42602 Davidia involucrata HOM05D000921 ORTHO05D004782 2.6e-22 109.4 151 44.4
Rhsim06G0071200 Rhododendron simsii HOM05D000921 ORTHO05D004782 5.7e-22 108.2 146 43.2
GSVIVG01009194001 Vitis vinifera HOM05D000921 ORTHO05D004782 2.0e-19 99.8 151 41.1
Nn5g29852 Nelumbo nucifera HOM05D000921 ORTHO05D004782 8.5e-18 94.4 153 37.3
Aqoxy6G00846 Aquilegia oxysepala HOM05D000921 ORTHO05D004782 7.2e-17 91.3 152 36.8
DCAR_012852 Daucus carota HOM05D000921 ORTHO05D004782 1.2e-16 90.5 150 36.0
FAN18G1361 Fragaria x ananassa HOM05D000921 ORTHO05D004782 1.6e-16 90.1 147 34.7
TAR381G0975 Trochodendron aralioides HOM05D000921 ORTHO05D004782 1.6e-16 90.1 155 34.8
FvH4_5g34530 Fragaria vesca HOM05D000921 ORTHO05D004782 2.1e-16 89.7 147 34.7
FAN08G1747 Fragaria x ananassa HOM05D000921 ORTHO05D004782 2.1e-16 89.7 147 34.7
FAN13G0958 Fragaria x ananassa HOM05D000921 ORTHO05D004782 2.1e-16 89.7 147 34.7
Cc10_g08450 Coffea canephora HOM05D000921 ORTHO05D004782 2.7e-16 89.4 150 36.7
COL.COLO4_35265 Corchorus olitorius HOM05D000921 ORTHO05D004782 2.7e-16 89.4 153 35.9
Potri.002G111000 Populus trichocarpa HOM05D000921 ORTHO05D004782 3.6e-16 89.0 155 34.8
Prupe.1G534000 Prunus persica HOM05D000921 ORTHO05D004782 1.4e-15 87.0 154 32.5
Sabra02G0087600 Salix brachista HOM05D000921 ORTHO05D004782 1.4e-15 87.0 155 33.5
Thecc.08G072600 Theobroma cacao HOM05D000921 ORTHO05D004782 1.8e-15 86.7 155 34.2
DCAR_019322 Daucus carota HOM05D000921 ORTHO05D004782 2.3e-15 86.3 150 34.0
RcHm_v2.0_Chr7g0235181 Rosa chinensis HOM05D000921 ORTHO05D004782 2.3e-15 86.3 147 33.3
MD08G1200500 Malus domestica HOM05D000921 ORTHO05D004782 3.9e-15 85.5 155 32.3
MD15G1387600 Malus domestica HOM05D000921 ORTHO05D004782 3.9e-15 85.5 151 33.1
Haze_22475 Corylus avellana HOM05D000921 ORTHO05D004782 1.1e-14 84.0 145 35.2
Eucgr.F00430 Eucalyptus grandis HOM05D000921 ORTHO05D004782 2.0e-14 83.2 154 34.4
Ciclev10000002m.g Citrus clementina HOM05D000921 ORTHO05D004782 4.4e-14 82.0 148 35.1
CAN.G475.8 Capsicum annuum HOM05D000921 ORTHO05D004782 5.7e-14 81.6 149 34.9
Gorai.010G033800 Gossypium raimondii HOM05D000921 ORTHO05D004782 1.3e-13 80.5 155 34.8
HanXRQChr05g0163481 Helianthus annuus HOM05D000921 ORTHO05D004782 1.3e-13 80.5 145 32.4
Nitab4.5_0000131g0100 Nicotiana tabacum HOM05D000921 ORTHO05D004782 1.7e-13 80.1 149 35.6
Nitab4.5_0002391g0010 Nicotiana tabacum HOM05D000921 ORTHO05D004782 1.7e-13 80.1 149 35.6
ECA246G1489 Erigeron canadensis HOM05D000921 ORTHO05D004782 2.2e-13 79.7 151 31.1
Gohir.D02G086100 Gossypium hirsutum HOM05D000921 ORTHO05D004782 2.2e-13 79.7 147 34.7
Gohir.D06G030750 Gossypium hirsutum HOM05D000921 ORTHO05D004782 2.2e-13 79.7 151 35.1
Gorai.005G097000 Gossypium raimondii HOM05D000921 ORTHO05D004782 2.2e-13 79.7 147 34.7
Lsat_1_v5_gn_6_107401 Lactuca sativa HOM05D000921 ORTHO05D004782 2.2e-13 79.7 150 33.3
Gohir.A02G078801 Gossypium hirsutum HOM05D000921 ORTHO05D004782 3.7e-13 79.0 147 34.7
Gohir.A06G031500 Gossypium hirsutum HOM05D000921 ORTHO05D004782 3.7e-13 79.0 150 33.3
TWI56G0737 Tripterygium wilfordii HOM05D000921 ORTHO05D004782 3.7e-13 79.0 153 34.0
Phvul.009G035500 Phaseolus vulgaris HOM05D000921 ORTHO05D004782 4.8e-13 78.6 146 34.2
Sed0001609 Sechium edule HOM05D000921 ORTHO05D004782 4.8e-13 78.6 153 32.0
Sopen04g030240 Solanum pennellii HOM05D000921 ORTHO05D004782 6.3e-13 78.2 149 35.6
CiPaw.07G164000 Carya illinoinensis HOM05D000921 ORTHO05D004782 1.1e-12 77.4 155 31.0
Glyma.06G097800 Glycine max HOM05D000921 ORTHO05D004782 1.4e-12 77.0 146 33.6
Peaxi162Scf00454g00119 Petunia axillaris HOM05D000921 ORTHO05D004782 1.4e-12 77.0 149 33.6
Glyma.04G096100 Glycine max HOM05D000921 ORTHO05D004782 1.8e-12 76.6 145 33.1
Lj4A739G26 Lonicera japonica HOM05D000921 ORTHO05D004782 1.8e-12 76.6 149 33.6
QL09p018095 Quercus lobata HOM05D000921 ORTHO05D004782 1.8e-12 76.6 155 31.6
Atru.chr13.992 Acer truncatum HOM05D000921 ORTHO05D004782 2.4e-12 76.3 77 50.6
ClCG11G014650 Citrullus lanatus HOM05D000921 ORTHO05D004782 2.4e-12 76.3 150 32.7
Manes.18G056822 Manihot esculenta HOM05D000921 ORTHO05D004782 3.1e-12 75.9 147 30.6
Medtr3g100060 Medicago truncatula HOM05D000921 ORTHO05D004782 5.3e-12 75.1 146 31.5
arahy.Tifrunner.gnm1.ann1.YNEA8K Arachis hypogaea HOM05D000921 ORTHO05D004782 7.0e-12 74.7 145 30.3
CsaV3_3G048070 Cucumis sativus L. HOM05D000921 ORTHO05D004782 7.0e-12 74.7 149 31.5
arahy.Tifrunner.gnm1.ann1.KCR83B Arachis hypogaea HOM05D000921 ORTHO05D004782 9.1e-12 74.3 145 30.3
Ca_16011_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004782 1.6e-11 73.6 146 28.8
CANSAT54G2772 Cannabis sativa HOM05D000921 ORTHO05D004782 2.0e-11 73.2 151 30.5
Lj1g0023313 Lotus japonicus HOM05D000921 ORTHO05D004782 2.0e-11 73.2 146 30.1
Nn8g40360 Nelumbo nucifera HOM05D000921 ORTHO05D004782 2.0e-11 73.2 74 45.9
Nn1g04217 Nelumbo nucifera HOM05D001236 ORTHO05D001090 4.5e-11 72.0 70 48.6
VMungo1309G2985 Vigna mungo HOM05D000921 ORTHO05D004782 5.9e-11 71.6 146 31.5
Psat5g049440 Pisum sativum HOM05D000921 ORTHO05D004782 1.0e-10 70.9 146 28.1
AUR62019100 Chenopodium quinoa HOM05D000921 ORTHO05D004782 1.7e-10 70.1 155 29.0
AUR62014358 Chenopodium quinoa HOM05D000921 ORTHO05D004782 2.2e-10 69.7 155 29.0
EL10Ac1g00502 Beta vulgaris HOM05D000921 ORTHO05D004782 2.9e-10 69.3 154 29.2
SGA_v2.0_scaffold28G11888 Striga asiatica HOM05D000921 ORTHO05D004782 2.9e-10 69.3 81 45.7
Ah.05g171390 Amaranthus hybridus HOM05D000921 ORTHO05D004782 5.0e-10 68.6 81 42.0
HPP92_013154 Vanilla planifolia HOM05D000921 ORTHO05D004782 5.0e-10 68.6 149 28.9
MELO3C003512.2 Cucumis melo HOM05D000921 ORTHO05D004782 6.5e-10 68.2 149 29.5
PGR042G3444 Punica granatum HOM05D000921 ORTHO05D004782 6.5e-10 68.2 151 29.1
Migut.N02862 Erythranthe guttata HOM05D000921 ORTHO05D004782 8.5e-10 67.8 72 47.2
TPR.G6323 Trifolium pratense HOM05D000921 ORTHO05D004782 8.5e-10 67.8 145 26.2
Lalb_Chr23g0270001 Lupinus albus HOM05D000921 ORTHO05D004782 1.1e-09 67.4 150 28.0
CDE02G0144 Ceratophyllum demersum HOM05D000921 ORTHO05D004782 1.9e-09 66.6 77 40.3
Hund26819 Selenicereus undatus HOM05D000921 ORTHO05D004782 2.5e-09 66.2 154 27.3
MSTRG.24432 Avicennia marina HOM05D000921 ORTHO05D004782 3.2e-09 65.9 77 45.5
ATR0767G173 Amborella trichopoda HOM05D000921 ORTHO05D004782 1.8e-07 60.1 81 37.0
Zm00001eb207540 Zea mays HOM05D000921 ORTHO05D004782 1.2e-06 57.4 67 37.3
Os02g0162766 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004782 2.0e-06 56.6 141 26.2
Sc06g0003790 Simmondsia chinensis HOM05D000921 ORTHO05D004782 3.3e-06 55.8 65 40.0


User provided reference genes

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