Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.5e-103 378.3 185 100.0
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-63 246.1 171 79.5
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.7e-63 245.7 171 78.9
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.6e-63 245.0 171 78.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.0e-62 243.8 171 78.9
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.4e-61 237.7 171 77.2
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.1e-59 233.8 171 74.9
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 1.1e-59 233.8 171 76.0
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.4e-59 233.4 171 74.9
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 1.8e-59 233.0 171 74.3
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 2.4e-59 232.6 171 75.4
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 5.3e-59 231.5 171 74.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 1.2e-58 230.3 171 73.1
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 1.2e-58 230.3 171 74.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.2e-58 230.3 171 74.3
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 1.5e-58 229.9 171 73.7
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 5.8e-58 228.0 171 73.1
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 5.8e-58 228.0 171 72.5
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 7.6e-58 227.6 171 72.5
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.0e-57 227.3 171 73.1
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 1.3e-57 226.9 171 72.5
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.3e-57 226.9 171 72.5
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 1.7e-57 226.5 171 73.7
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.2e-57 226.1 166 75.3
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 2.2e-57 226.1 171 71.9
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.2e-57 226.1 171 70.8
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 2.9e-57 225.7 171 71.9
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 2.9e-57 225.7 171 73.1
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 2.9e-57 225.7 171 72.5
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 3.8e-57 225.3 171 72.5
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.8e-57 225.3 166 74.7
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 3.8e-57 225.3 171 73.1
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.8e-57 225.3 171 72.5
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 4.9e-57 224.9 170 72.9
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 4.9e-57 224.9 171 73.1
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 4.9e-57 224.9 171 71.9
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 4.9e-57 224.9 171 71.9
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 4.9e-57 224.9 171 71.9
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.5e-57 224.6 171 71.9
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 6.5e-57 224.6 171 71.9
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 1.1e-56 223.8 171 71.9
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.1e-56 223.8 171 71.9
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 1.1e-56 223.8 171 72.5
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.1e-56 223.8 171 72.5
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.1e-56 223.8 171 71.3
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 1.1e-56 223.8 171 72.5
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 1.1e-56 223.8 171 71.9
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.4e-56 223.4 171 71.9
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 1.4e-56 223.4 171 72.5
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.9e-56 223.0 171 71.3
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.5e-56 222.6 171 70.2
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 2.5e-56 222.6 171 71.3
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 2.5e-56 222.6 171 71.3
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 2.5e-56 222.6 171 70.8
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 3.2e-56 222.2 171 71.3
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 3.2e-56 222.2 171 71.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 4.2e-56 221.9 171 71.3
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 4.2e-56 221.9 171 72.5
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 4.2e-56 221.9 171 71.3
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 5.5e-56 221.5 171 69.6
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 5.5e-56 221.5 171 70.2
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 7.1e-56 221.1 171 70.8
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 7.1e-56 221.1 171 70.8
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 7.1e-56 221.1 171 70.2
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 9.3e-56 220.7 171 70.8
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 9.3e-56 220.7 171 70.8
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 9.3e-56 220.7 171 70.2
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.2e-55 220.3 171 71.3
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.6e-55 219.9 171 69.0
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 2.7e-55 219.2 171 71.3
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 6.0e-55 218.0 171 68.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 6.0e-55 218.0 171 68.4
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 6.0e-55 218.0 171 70.2
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 1.0e-54 217.2 173 69.9
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 1.3e-54 216.9 171 70.2
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.3e-54 216.9 171 69.6
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 1.3e-54 216.9 171 70.8
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 1.8e-54 216.5 171 69.6
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 2.3e-54 216.1 171 69.6
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.3e-54 216.1 171 70.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 5.1e-54 214.9 170 68.2
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 5.1e-54 214.9 171 69.6
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 6.7e-54 214.5 171 69.0
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 6.7e-54 214.5 171 69.0
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.7e-54 214.5 171 70.2
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.1e-53 213.8 170 68.2
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 1.5e-53 213.4 171 69.0
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 1.5e-53 213.4 171 69.0
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 1.5e-53 213.4 171 69.0
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.5e-53 213.4 170 69.4
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 1.9e-53 213.0 171 67.8
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 2.5e-53 212.6 171 69.0
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 3.3e-53 212.2 171 69.0
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.3e-53 211.8 161 75.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 9.6e-53 210.7 171 68.4
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 2.1e-52 209.5 171 67.8
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 4.8e-52 208.4 171 67.3
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 6.3e-52 208.0 171 67.3
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 8.2e-52 207.6 171 67.3
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 8.2e-52 207.6 171 66.7
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 1.1e-51 207.2 171 66.7
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 1.1e-51 207.2 171 66.1
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 1.4e-51 206.8 170 66.5
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.4e-51 206.1 171 67.3
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 9.0e-51 204.1 171 66.7
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 9.0e-51 204.1 171 66.7
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 9.0e-51 204.1 171 66.7
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.6e-50 202.6 171 66.1
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.0e-49 200.7 171 68.4
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 2.9e-49 199.1 171 63.7
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 5.0e-49 198.4 171 66.7
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 5.0e-49 198.4 153 73.9
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.4e-48 196.8 162 67.3
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 5.5e-48 194.9 171 63.7
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 1.6e-47 193.4 171 64.3
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.0e-46 189.1 171 60.2
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.0e-46 189.1 171 60.2
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.8e-44 182.6 146 71.9
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.1e-43 180.6 171 60.2
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.4e-43 180.3 171 60.8
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 1.5e-42 176.8 171 60.8
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 8.8e-30 134.4 176 46.0
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 2.6e-29 132.9 174 46.6
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 5.9e-26 121.7 82 78.0
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 7.2e-24 114.8 171 41.5
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 8.8e-22 107.8 155 43.2
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.2e-21 107.5 171 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 9.7e-21 104.4 153 43.1
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.4e-19 100.5 172 39.0
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.4e-19 99.8 171 40.4
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.5e-18 95.9 164 39.0
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.2e-16 88.2 172 36.6
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 3.0e-14 82.8 60 65.0
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 6.8e-14 81.6 50 84.0
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 1.8e-06 57.0 42 61.9


User provided reference genes

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