Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006685 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.4e-72 276.2 143 100.0
CSS0001709 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.2e-58 229.9 119 98.3
CSS0002085 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.0e-57 226.9 119 95.8
GSVIVG01012151001 Vitis vinifera HOM05D003515 ORTHO05D004347 9.4e-56 220.3 119 92.4
CSS0028889 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.6e-55 219.5 119 93.3
CSS0046591 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.1e-55 217.6 119 95.0
Hma1.2p1_0088F.1_g045243 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 1.0e-54 216.9 119 91.6
Dinv07004 Davidia involucrata HOM05D003515 ORTHO05D004347 3.0e-54 215.3 133 82.7
Rhsim13G0134000 Rhododendron simsii HOM05D003515 ORTHO05D004347 5.2e-54 214.5 119 90.8
RhsimUnG0176900 Rhododendron simsii HOM05D003515 ORTHO05D004347 5.2e-54 214.5 119 90.8
vmacro03558 Vaccinium macrocarpon HOM05D003515 ORTHO05D004347 5.2e-54 214.5 132 82.6
Haze_05267 Corylus avellana HOM05D003515 ORTHO05D004347 6.7e-54 214.2 118 90.7
QL11p012061 Quercus lobata HOM05D003515 ORTHO05D004347 1.5e-53 213.0 118 89.8
Lj1C1149T14 Lonicera japonica HOM05D003515 ORTHO05D004347 4.4e-53 211.5 118 89.0
AUR62037879 Chenopodium quinoa HOM05D003515 ORTHO05D004347 7.5e-53 210.7 139 76.3
Ciclev10014398m.g Citrus clementina HOM05D003515 ORTHO05D004347 7.5e-53 210.7 117 88.9
TAR624G0550 Trochodendron aralioides HOM05D003515 ORTHO05D004347 1.3e-52 209.9 122 86.9
CSS0015899 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.2e-52 209.1 118 92.4
Hma1.2p1_0088F.1_g045246 Hydrangea macrophylla HOM05D003515 ORTHO05D004347 2.8e-52 208.8 113 92.9
Cfa001125 Carpinus fangiana HOM05D003515 ORTHO05D004347 3.7e-52 208.4 118 88.1
PSO541G6439 Papaver somniferum HOM05D003515 ORTHO05D004347 3.7e-52 208.4 119 86.6
TWI63G0015 Tripterygium wilfordii HOM05D003515 ORTHO05D004347 3.7e-52 208.4 132 81.1
COL.COLO4_16231 Corchorus olitorius HOM05D003515 ORTHO05D004347 6.3e-52 207.6 118 88.1
CiPaw.10G105500 Carya illinoinensis HOM05D003515 ORTHO05D004347 8.2e-52 207.2 118 88.1
Prupe.4G118000 Prunus persica HOM05D003515 ORTHO05D004347 1.1e-51 206.8 118 88.1
EL10Ac7g17242 Beta vulgaris HOM05D003515 ORTHO05D004347 1.4e-51 206.5 129 82.2
FAN11G3814 Fragaria x ananassa HOM05D003515 ORTHO05D004347 4.1e-51 204.9 118 85.6
FAN16G1075 Fragaria x ananassa HOM05D003515 ORTHO05D004347 4.1e-51 204.9 118 85.6
FAN21G1878 Fragaria x ananassa HOM05D003515 ORTHO05D004347 4.1e-51 204.9 118 85.6
Manes.03G074900 Manihot esculenta HOM05D003515 ORTHO05D004347 7.0e-51 204.1 132 78.8
MD10G1227200 Malus domestica HOM05D003515 ORTHO05D004347 9.1e-51 203.8 117 88.0
Nn7g38343 Nelumbo nucifera HOM05D003515 ORTHO05D004347 9.1e-51 203.8 119 84.0
Gohir.A05G245600 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.2e-50 203.4 118 84.7
DCAR_007777 Daucus carota HOM05D003515 ORTHO05D004347 1.6e-50 203.0 130 76.9
Gohir.D05G247100 Gossypium hirsutum HOM05D003515 ORTHO05D004347 1.6e-50 203.0 118 84.7
Gorai.009G257800 Gossypium raimondii HOM05D003515 ORTHO05D004347 1.6e-50 203.0 118 84.7
HanXRQChr14g0439721 Helianthus annuus HOM05D003515 ORTHO05D004347 1.6e-50 203.0 121 86.8
CSS0031993 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 2.0e-50 202.6 114 92.1
CsaV3_6G052970 Cucumis sativus L. HOM05D003515 ORTHO05D004347 2.0e-50 202.6 119 82.4
ClCG01G025730 Citrullus lanatus HOM05D003515 ORTHO05D004347 2.7e-50 202.2 119 82.4
Thecc.02G003700 Theobroma cacao HOM05D003515 ORTHO05D004347 2.7e-50 202.2 118 85.6
HanXRQChr14g0439691 Helianthus annuus HOM05D003515 ORTHO05D004347 4.5e-50 201.4 121 86.0
RcHm_v2.0_Chr5g0021201 Rosa chinensis HOM05D003515 ORTHO05D004347 4.5e-50 201.4 118 85.6
Duzib132G1190 Durio zibethinus HOM05D003515 ORTHO05D004347 5.9e-50 201.1 118 85.6
Ah.15g091880 Amaranthus hybridus HOM05D003515 ORTHO05D004347 7.7e-50 200.7 120 83.3
Oeu008987.4 Olea europaea HOM05D003515 ORTHO05D004347 1.3e-49 199.9 118 83.1
PGSC0003DMG401001013 Solanum tuberosum HOM05D003515 ORTHO05D004347 1.3e-49 199.9 120 82.5
Migut.M02011 Erythranthe guttata HOM05D003515 ORTHO05D004347 2.2e-49 199.1 125 80.0
AT5G44740 Arabidopsis thaliana HOM05D003515 ORTHO05D004347 2.9e-49 198.7 118 83.1
ECA238G0584 Erigeron canadensis HOM05D003515 ORTHO05D004347 2.9e-49 198.7 117 85.5
Atru.chr10.315 Acer truncatum HOM05D003515 ORTHO05D004347 3.8e-49 198.4 132 76.5
AUR62040332 Chenopodium quinoa HOM05D003515 ORTHO05D004347 3.8e-49 198.4 117 85.5
Lsat_1_v5_gn_2_60141 Lactuca sativa HOM05D003515 ORTHO05D004347 3.8e-49 198.4 118 83.1
AL8G14790 Arabidopsis lyrata HOM05D003515 ORTHO05D004347 5.0e-49 198.0 118 83.1
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 5.0e-49 198.0 117 83.8
Cc09_g05170 Coffea canephora HOM05D003515 ORTHO05D004347 8.5e-49 197.2 118 85.6
Sabra03G0110800 Salix brachista HOM05D003515 ORTHO05D004347 8.5e-49 197.2 117 84.6
Nitab4.5_0003190g0020 Nicotiana tabacum HOM05D003515 ORTHO05D004347 1.1e-48 196.8 117 82.9
Sopen01g017810 Solanum pennellii HOM05D003515 ORTHO05D004347 1.1e-48 196.8 120 80.8
Ca_18232_v3 Cicer arietinum L. HOM05D003515 ORTHO05D004347 1.9e-48 196.1 117 82.9
PGR004G1774 Punica granatum HOM05D003515 ORTHO05D004347 1.9e-48 196.1 123 79.7
Sp2g09580 Schrenkiella parvula HOM05D003515 ORTHO05D004347 1.9e-48 196.1 118 82.2
SGA_v2.0_scaffold298G47708 Striga asiatica HOM05D003515 ORTHO05D004347 2.5e-48 195.7 118 83.9
MSTRG.2877 Avicennia marina HOM05D003515 ORTHO05D004347 3.2e-48 195.3 118 82.2
Carub.0008s0352 Capsella rubella HOM05D003515 ORTHO05D004347 3.2e-48 195.3 118 81.4
Thhalv10000807m.g Eutrema salsugineum HOM05D003515 ORTHO05D004347 3.2e-48 195.3 117 82.9
Solyc01g034150.4 Solanum lycopersicum HOM05D003515 ORTHO05D004347 3.2e-48 195.3 120 80.8
Medtr4g094755 Medicago truncatula HOM05D003515 ORTHO05D004347 4.2e-48 194.9 117 82.1
Nitab4.5_0000254g0140 Nicotiana tabacum HOM05D003515 ORTHO05D004347 4.2e-48 194.9 117 82.1
CANSAT35G1862 Cannabis sativa HOM05D003515 ORTHO05D004347 5.5e-48 194.5 117 82.9
Eucgr.D00012 Eucalyptus grandis HOM05D003515 ORTHO05D004347 5.5e-48 194.5 129 78.3
Aa31LG9G8430 Aethionema arabicum HOM05D003515 ORTHO05D004347 7.2e-48 194.1 119 79.8
Lalb_Chr13g0293411 Lupinus albus HOM05D003515 ORTHO05D004347 7.2e-48 194.1 117 82.1
Psat7g087560 Pisum sativum HOM05D003515 ORTHO05D004347 7.2e-48 194.1 117 80.3
RcHm_v2.0_Chr4g0406921 Rosa chinensis HOM05D003515 ORTHO05D004347 7.2e-48 194.1 118 82.2
CAN.G391.1 Capsicum annuum HOM05D003515 ORTHO05D004347 9.4e-48 193.7 119 79.8
HPP92_014201 Vanilla planifolia HOM05D003515 ORTHO05D004347 9.4e-48 193.7 117 80.3
HPP92_026459 Vanilla planifolia HOM05D003515 ORTHO05D004347 9.4e-48 193.7 117 80.3
CARHR178160 Cardamine hirsuta HOM05D003515 ORTHO05D004347 1.2e-47 193.4 118 79.7
Aqoxy2G04030 Aquilegia oxysepala HOM05D003515 ORTHO05D004347 2.7e-47 192.2 119 76.5
Peaxi162Scf00151g00110 Petunia axillaris HOM05D003515 ORTHO05D004347 4.7e-47 191.4 117 81.2
arahy.Tifrunner.gnm1.ann1.NQ3I2Y Arachis hypogaea HOM05D003515 ORTHO05D004347 1.4e-46 189.9 117 80.3
BcaNung07103 Brassica carinata HOM05D003515 ORTHO05D004347 1.4e-46 189.9 117 80.3
ATR0763G272 Amborella trichopoda HOM05D003515 ORTHO05D004347 3.0e-46 188.7 119 74.8
arahy.Tifrunner.gnm1.ann1.ZWBN17 Arachis hypogaea HOM05D003515 ORTHO05D004347 5.2e-46 188.0 117 79.5
SEGI_02016 Sequoiadendron giganteum HOM05D003515 ORTHO05D004347 5.2e-46 188.0 119 75.6
Cpa.g.sc30.112 Carica papaya HOM05D003515 ORTHO05D004347 6.8e-46 187.6 116 81.9
Sed0024374 Sechium edule HOM05D003515 ORTHO05D004347 8.8e-46 187.2 119 75.6
Lj4g0010619 Lotus japonicus HOM05D003515 ORTHO05D004347 1.5e-45 186.4 117 77.8
A06p46940 Brassica napus HOM05D003515 ORTHO05D004347 2.0e-45 186.0 119 79.0
BraA06t27567Z Brassica rapa HOM05D003515 ORTHO05D004347 2.0e-45 186.0 119 79.0
THA.LOC104812921 Tarenaya hassleriana HOM05D003515 ORTHO05D004347 2.6e-45 185.7 118 75.4
Phvul.002G188000 Phaseolus vulgaris HOM05D003515 ORTHO05D004347 3.4e-45 185.3 124 74.2
VMungo0251G3194 Vigna mungo HOM05D003515 ORTHO05D004347 4.4e-45 184.9 124 74.2
C07p27710 Brassica napus HOM05D003515 ORTHO05D004347 5.7e-45 184.5 119 78.2
BolC7t43303H Brassica oleracea HOM05D003515 ORTHO05D004347 5.7e-45 184.5 119 78.2
unitig_748.g8071 Utricularia gibba HOM05D003515 ORTHO05D004347 5.7e-45 184.5 117 76.1
Os01g0757800 Oryza sativa ssp. japonica HOM05D003515 ORTHO05D004347 9.8e-45 183.7 117 78.6
BcaNung06821 Brassica carinata HOM05D003515 ORTHO05D004347 1.3e-44 183.3 142 67.6
Glyma.08G088900 Glycine max HOM05D003515 ORTHO05D004347 1.3e-44 183.3 124 73.4
RcHm_v2.0_Chr5g0021111 Rosa chinensis HOM05D003515 ORTHO05D004347 1.7e-44 183.0 121 78.5
SHI28054 Sapria himalayana HOM05D003515 ORTHO05D004347 4.5e-42 174.9 123 72.4
CSS0015745 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 6.5e-41 171.0 93 94.6
RcHm_v2.0_Chr5g0021171 Rosa chinensis HOM05D003515 ORTHO05D004347 6.8e-38 161.0 121 71.1
AagrBONN_evm.TU.Sc2ySwM_228.4437 Anthoceros agrestis HOM05D003515 ORTHO05D004347 1.3e-36 156.8 124 63.7
CSS0033549 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.8e-35 152.9 131 66.4
MELO3C007012.2 Cucumis melo HOM05D003515 ORTHO05D004347 5.4e-35 151.4 92 80.4
Pp3c8_17250 Physcomitrium patens HOM05D003515 ORTHO05D004347 3.5e-34 148.7 119 63.9
SMO118G0165 Selaginella moellendorffii HOM05D003515 ORTHO05D004347 3.5e-34 148.7 120 63.3
CSS0007738 Camellia sinensis var. sinensis HOM05D003515 ORTHO05D004347 1.7e-33 146.4 86 93.0
CBR_g30567 Chara braunii HOM05D003515 ORTHO05D004347 8.6e-33 144.1 117 62.4
Mapoly0100s0031 Marchantia polymorpha HOM05D003515 ORTHO05D004347 1.6e-31 139.8 119 57.1
Zm00001eb277800 Zea mays HOM05D003515 ORTHO05D004347 9.8e-29 130.6 90 74.4
Zm00001eb303570 Zea mays HOM05D003515 ORTHO05D004347 2.9e-28 129.0 91 73.6
Zm00001eb388450 Zea mays HOM05D003515 ORTHO05D004347 2.9e-28 129.0 91 73.6
Zm00001eb440130 Zea mays HOM05D003515 ORTHO05D004347 2.9e-28 129.0 91 73.6
Zm00001eb441390 Zea mays HOM05D003515 ORTHO05D004347 2.9e-28 129.0 91 73.6
Zm00001eb441960 Zea mays HOM05D003515 ORTHO05D004347 2.9e-28 129.0 91 73.6
Zm00001eb191750 Zea mays HOM05D003515 ORTHO05D004347 3.7e-28 128.6 90 73.3
Zm00001eb225590 Zea mays HOM05D003515 ORTHO05D004347 3.7e-28 128.6 90 73.3
Zm00001eb031780 Zea mays HOM05D003515 ORTHO05D004347 3.2e-27 125.6 90 72.2
Zm00001eb203100 Zea mays HOM05D003515 ORTHO05D004347 5.4e-27 124.8 91 72.5
Zm00001eb070690 Zea mays HOM05D003515 ORTHO05D004347 1.2e-26 123.6 88 72.7
Zm00001eb371460 Zea mays HOM05D003515 ORTHO05D004347 3.3e-24 115.5 82 73.2
CDE06G0149 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 1.2e-23 113.6 64 84.4
Cre12.g524150 Chlamydomonas reinhardtii HOM05D003515 ORTHO05D004347 3.6e-23 112.1 120 51.7
Psat7g087520 Pisum sativum HOM05D003515 ORTHO05D004347 6.0e-18 94.7 88 60.2
PRCOL_00006902 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 1.3e-17 93.6 104 51.9
CDE06G2844 Ceratophyllum demersum HOM05D003515 ORTHO05D004363 1.5e-16 90.1 49 85.7
CDE06G0434 Ceratophyllum demersum HOM05D003515 ORTHO05D004347 2.1e-15 86.3 82 57.3
Pp3c14_23660 Physcomitrium patens HOM05D003515 ORTHO05D004347 1.0e-09 67.4 100 42.0
PRCOL_00005783 Prasinoderma coloniale HOM05D003515 ORTHO05D004347 5.6e-08 61.6 107 42.1
Mapoly0226s0007 Marchantia polymorpha HOM05D003515 ORTHO05D004347 7.3e-08 61.2 100 38.0
CBR_g20120 Chara braunii HOM05D003515 ORTHO05D004347 1.1e-06 57.4 91 34.1
MCO03G362 Micromonas commoda HOM05D003515 ORTHO05D004347 1.1e-06 57.4 85 47.1
MCO16G582 Micromonas commoda HOM05D003515 ORTHO05D004347 1.4e-06 57.0 90 34.4


User provided reference genes

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