Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006680 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 3.2e-210 734.9 407 100.0
CSS0045865 Camellia sinensis var. sinensis HOM05D001295 ORTHO05D005319 1.2e-209 733.0 407 99.5
GSVIVG01004102001 Vitis vinifera HOM05D001295 ORTHO05D005319 3.6e-153 545.4 359 75.2
Peaxi162Scf00180g00045 Petunia axillaris HOM05D001295 ORTHO05D005319 9.3e-141 504.2 359 67.4
TAR633G1947 Trochodendron aralioides HOM05D001295 ORTHO05D005319 9.3e-141 504.2 359 70.5
CAN.G65.159 Capsicum annuum HOM05D001295 ORTHO05D005319 3.3e-138 495.7 359 67.7
Oeu020777.1 Olea europaea HOM05D001295 ORTHO05D005319 9.6e-138 494.2 361 69.0
PGSC0003DMG400026920 Solanum tuberosum HOM05D001295 ORTHO05D005319 1.6e-137 493.4 359 67.4
Sopen06g029480 Solanum pennellii HOM05D001295 ORTHO05D005319 4.8e-137 491.9 359 67.7
Cc03_g12290 Coffea canephora HOM05D001295 ORTHO05D005319 1.4e-136 490.3 360 68.6
Atru.chr4.1272 Acer truncatum HOM05D001295 ORTHO05D005319 2.4e-136 489.6 365 67.9
Prupe.1G199500 Prunus persica HOM05D001295 ORTHO05D005319 7.6e-135 484.6 360 65.6
CiPaw.01G095500 Carya illinoinensis HOM05D001295 ORTHO05D005319 9.9e-135 484.2 359 68.2
Solyc06g073130.4 Solanum lycopersicum HOM05D001295 ORTHO05D005319 9.9e-135 484.2 379 64.6
Manes.11G126000 Manihot esculenta HOM05D001295 ORTHO05D005319 1.8e-131 473.4 359 64.3
Nitab4.5_0002553g0060 Nicotiana tabacum HOM05D001295 ORTHO05D005319 3.0e-131 472.6 419 58.9
Lsat_1_v5_gn_3_110661 Lactuca sativa HOM05D001295 ORTHO05D005319 1.9e-130 469.9 359 63.5
Potri.007G132100 Populus trichocarpa HOM05D001295 ORTHO05D005319 1.9e-130 469.9 361 64.0
DCAR_028425 Daucus carota HOM05D001295 ORTHO05D005319 6.2e-129 464.9 361 65.9
Thecc.04G173300 Theobroma cacao HOM05D001295 ORTHO05D005319 6.2e-129 464.9 359 64.1
Nn1g09559 Nelumbo nucifera HOM05D001295 ORTHO05D005319 1.1e-128 464.2 331 66.2
COL.COLO4_09274 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.7e-126 456.8 359 63.2
HanXRQChr13g0419451 Helianthus annuus HOM05D001295 ORTHO05D005319 1.7e-126 456.8 359 64.1
Lj3g0016601 Lotus japonicus HOM05D001295 ORTHO05D005319 2.2e-126 456.4 361 63.2
MD04G1046100 Malus domestica HOM05D001295 ORTHO05D005319 1.4e-125 453.8 365 62.7
PSO837G0039 Papaver somniferum HOM05D001295 ORTHO05D005319 4.2e-125 452.2 359 61.0
VMungo1080G0958 Vigna mungo HOM05D001295 ORTHO05D005319 5.5e-125 451.8 362 63.5
Rhsim09G0020700 Rhododendron simsii HOM05D001295 ORTHO05D005319 1.2e-124 450.7 420 58.8
Psat5g290520 Pisum sativum HOM05D001295 ORTHO05D005319 3.5e-124 449.1 362 62.4
Nitab4.5_0001586g0250 Nicotiana tabacum HOM05D001295 ORTHO05D005319 1.0e-123 447.6 337 65.6
Migut.G01307 Erythranthe guttata HOM05D001295 ORTHO05D005319 3.3e-122 442.6 359 61.3
SalBow8G2942 Salvia bowleyana HOM05D001295 ORTHO05D005319 4.3e-122 442.2 368 61.1
TPR.G6512 Trifolium pratense HOM05D001295 ORTHO05D005319 2.8e-121 439.5 362 61.3
Gorai.005G126300 Gossypium raimondii HOM05D001295 ORTHO05D005319 1.1e-120 437.6 361 61.8
PGR142G2463 Punica granatum HOM05D001295 ORTHO05D005319 3.8e-118 429.1 359 59.9
Glyma.15G028500 Glycine max HOM05D001295 ORTHO05D005319 7.2e-117 424.9 362 60.2
Medtr2g099125 Medicago truncatula HOM05D001295 ORTHO05D005319 1.4e-115 420.6 361 59.6
Sed0017723 Sechium edule HOM05D001295 ORTHO05D005319 4.3e-114 415.6 359 56.5
RhsimUnG0137700 Rhododendron simsii HOM05D001295 ORTHO05D005319 4.8e-113 412.1 284 72.9
Actinidia34573 Actinidia chinensis HOM05D001295 ORTHO05D005319 1.4e-112 410.6 257 82.5
THA.LOC104803837 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 5.3e-112 408.7 384 53.9
Cfa015203 Carpinus fangiana HOM05D001295 ORTHO05D005319 1.5e-111 407.1 359 59.1
Hund12401 Selenicereus undatus HOM05D001295 ORTHO05D005319 3.8e-110 402.5 345 59.7
Ca_01246_v3 Cicer arietinum L. HOM05D001295 ORTHO05D005319 8.5e-110 401.4 353 59.2
ATR0743G262 Amborella trichopoda HOM05D001295 ORTHO05D005319 7.2e-109 398.3 356 54.2
Thhalv10001762m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 9.4e-109 397.9 360 52.2
Carub.0004s2592 Capsella rubella HOM05D001295 ORTHO05D005319 7.9e-108 394.8 368 53.3
Gohir.D02G111400 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.0e-107 394.4 360 57.8
AUR62002356 Chenopodium quinoa HOM05D001295 ORTHO05D005319 5.1e-107 392.1 424 50.2
QL10p051312 Quercus lobata HOM05D001295 ORTHO05D005319 2.0e-106 390.2 458 49.1
arahy.Tifrunner.gnm1.ann1.982DXJ Arachis hypogaea HOM05D001295 ORTHO05D005319 7.4e-106 388.3 342 58.5
AL4G42200 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 1.3e-105 387.5 367 52.6
Migut.G01305 Erythranthe guttata HOM05D001295 ORTHO05D005319 1.3e-105 387.5 360 56.4
Sc21g0002910 Simmondsia chinensis HOM05D001295 ORTHO05D005319 5.3e-104 382.1 356 56.7
Aa31LG1G25200 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.5e-103 380.6 358 53.1
BraA05t19365Z Brassica rapa HOM05D001295 ORTHO05D005319 3.8e-102 375.9 370 51.9
HPP92_007597 Vanilla planifolia HOM05D001295 ORTHO05D005319 1.4e-101 374.0 355 51.5
ClCG06G001010 Citrullus lanatus HOM05D001295 ORTHO05D005319 1.6e-100 370.5 360 51.1
Gohir.A02G093300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 1.8e-99 367.1 360 54.7
Duzib212G0222 Durio zibethinus HOM05D001295 ORTHO05D005319 2.3e-99 366.7 380 53.4
Dinv05087 Davidia involucrata HOM05D001295 ORTHO05D005319 1.3e-97 360.9 257 73.9
vmacro00676 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 2.2e-97 360.1 213 83.6
Migut.G01326 Erythranthe guttata HOM05D001295 ORTHO05D005319 4.8e-97 359.0 295 60.3
Sp4g25550 Schrenkiella parvula HOM05D001295 ORTHO05D005319 1.8e-96 357.1 340 51.2
EL10Ac3g06020 Beta vulgaris HOM05D001295 ORTHO05D005319 1.2e-95 354.4 381 52.2
BcaB02g08938 Brassica carinata HOM05D001295 ORTHO05D005319 6.5e-94 348.6 342 50.0
arahy.Tifrunner.gnm1.ann1.CA0DYB Arachis hypogaea HOM05D001295 ORTHO05D005319 6.1e-92 342.0 368 50.8
BcaC02g12392 Brassica carinata HOM05D001295 ORTHO05D005319 2.3e-91 340.1 342 49.7
C04p04470 Brassica napus HOM05D001295 ORTHO05D005319 2.3e-91 340.1 342 49.7
A05p03770 Brassica napus HOM05D001295 ORTHO05D005319 3.0e-91 339.7 341 50.7
arahy.Tifrunner.gnm1.ann1.1HI5HP Arachis hypogaea HOM05D001295 ORTHO05D005319 4.4e-90 335.9 368 50.8
BolC4t22080H Brassica oleracea HOM05D001295 ORTHO05D005319 5.7e-90 335.5 338 49.4
MSTRG.4291 Avicennia marina HOM05D001295 ORTHO05D005319 5.5e-85 318.9 266 62.4
MELO3C022439.2 Cucumis melo HOM05D001295 ORTHO05D005319 7.2e-85 318.5 356 45.5
AUR62023829 Chenopodium quinoa HOM05D001295 ORTHO05D005319 1.8e-80 303.9 364 46.2
AagrBONN_evm.TU.Sc2ySwM_228.190 Anthoceros agrestis HOM05D001295 ORTHO05D005319 1.6e-79 300.8 385 43.6
PSO017G5265 Papaver somniferum HOM05D001295 ORTHO05D005319 2.0e-79 300.4 258 58.9
Mapoly0209s0009 Marchantia polymorpha HOM05D001295 ORTHO05D005319 7.7e-79 298.5 361 46.0
Phvul.005G154600 Phaseolus vulgaris HOM05D001295 ORTHO05D005319 3.8e-78 296.2 289 56.7
SGA_v2.0_scaffold12G06175 Striga asiatica HOM05D001295 ORTHO05D005319 5.0e-78 295.8 340 49.7
Aqoxy5G00377 Aquilegia oxysepala HOM05D001295 ORTHO05D005319 8.6e-78 295.0 255 59.6
QL10p051666 Quercus lobata HOM05D001295 ORTHO05D005319 5.2e-75 285.8 242 64.0
Eucgr.H00340 Eucalyptus grandis HOM05D001295 ORTHO05D005319 2.0e-74 283.9 257 58.0
unitig_37.g12026 Utricularia gibba HOM05D001295 ORTHO05D005319 9.8e-74 281.6 215 65.1
Lalb_Chr14g0372571 Lupinus albus HOM05D001295 ORTHO05D005319 1.9e-69 267.3 260 54.6
CsaV3_6G006850 Cucumis sativus L. HOM05D005724 ORTHO05D006636 1.2e-68 264.6 264 49.2
SMO337G0100 Selaginella moellendorffii HOM05D001295 ORTHO05D005319 3.6e-68 263.1 270 51.5
Ciclev10021666m.g Citrus clementina HOM05D001295 ORTHO05D005319 4.7e-68 262.7 239 58.2
Sabra07G0119100 Salix brachista HOM05D001295 ORTHO05D005319 5.2e-67 259.2 349 43.8
ECA240G1882 Erigeron canadensis HOM05D001295 ORTHO05D005319 2.2e-65 253.8 195 63.6
Gohir.D08G098300 Gossypium hirsutum HOM05D001295 ORTHO05D005319 9.2e-64 248.4 216 62.0
CARHR138550 Cardamine hirsuta HOM05D001295 ORTHO05D005319 1.2e-63 248.1 264 47.0
COL.COLO4_21796 Corchorus olitorius HOM05D001295 ORTHO05D005319 1.2e-63 248.1 232 58.2
Lalb_Chr22g0352051 Lupinus albus HOM05D001295 ORTHO05D005319 1.2e-63 248.1 235 55.3
Gorai.004G105900 Gossypium raimondii HOM05D001295 ORTHO05D005319 2.0e-63 247.3 216 61.6
Sabra07G0107500 Salix brachista HOM05D001295 ORTHO05D005319 1.3e-62 244.6 227 61.7
TWI15G0408 Tripterygium wilfordii HOM05D001295 ORTHO05D005319 9.5e-61 238.4 243 54.3
Lj3C135G1 Lonicera japonica HOM05D001295 ORTHO05D005319 6.8e-59 232.3 229 56.8
Sabra07G0119300 Salix brachista HOM05D001295 ORTHO05D005319 4.9e-57 226.1 219 59.8
Ciclev10021418m.g Citrus clementina HOM05D001295 ORTHO05D005319 7.8e-55 218.8 268 47.4
Gohir.A08G092500 Gossypium hirsutum HOM05D001295 ORTHO05D005319 5.1e-54 216.1 216 56.9
Sed0000422 Sechium edule HOM05D001295 ORTHO05D005319 8.6e-54 215.3 195 60.5
Manes.04G047700 Manihot esculenta HOM05D001295 ORTHO05D005319 1.9e-53 214.2 216 56.0
RcHm_v2.0_Chr6g0292651 Rosa chinensis HOM05D001295 ORTHO05D005319 1.6e-52 211.1 206 55.3
Zm00001eb064040 Zea mays HOM05D001295 ORTHO05D005319 2.8e-52 210.3 184 57.6
FAN24G0827 Fragaria x ananassa HOM05D001295 ORTHO05D005319 1.2e-50 204.9 225 51.6
FAN27G1301 Fragaria x ananassa HOM05D001295 ORTHO05D005319 2.6e-50 203.8 225 51.6
THA.LOC104820845 Tarenaya hassleriana HOM05D001295 ORTHO05D005319 5.8e-50 202.6 226 52.7
Thhalv10021391m.g Eutrema salsugineum HOM05D001295 ORTHO05D005319 1.3e-49 201.4 225 50.7
FvH4_2g24830 Fragaria vesca HOM05D001295 ORTHO05D005319 2.2e-49 200.7 225 51.1
AT3G03320 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 1.9e-48 197.6 234 49.1
Carub.0003s0249 Capsella rubella HOM05D001295 ORTHO05D005319 2.4e-48 197.2 225 51.1
ClCG07G011710 Citrullus lanatus HOM05D001295 ORTHO05D005319 3.2e-48 196.8 214 53.7
AL3G12950 Arabidopsis lyrata HOM05D001295 ORTHO05D005319 4.1e-48 196.4 225 49.8
A05p43870 Brassica napus HOM05D001295 ORTHO05D005319 1.2e-47 194.9 225 49.8
BcaC05g30303 Brassica carinata HOM05D001295 ORTHO05D005319 2.3e-46 190.7 141 67.4
BraA05t23124Z Brassica rapa HOM05D001295 ORTHO05D005319 2.3e-46 190.7 225 49.3
Migut.G01331 Erythranthe guttata HOM05D001295 ORTHO05D005319 2.3e-46 190.7 180 56.1
Pp3c13_1370 Physcomitrium patens HOM05D001295 ORTHO05D005319 3.0e-46 190.3 268 44.0
Sp3g02350 Schrenkiella parvula HOM05D001295 ORTHO05D005319 3.9e-46 189.9 189 56.1
C05p63460 Brassica napus HOM05D001295 ORTHO05D005319 5.1e-46 189.5 188 55.3
Thecc.04G173200 Theobroma cacao HOM05D001295 ORTHO05D005319 5.1e-46 189.5 179 59.2
BolC5t35010H Brassica oleracea HOM05D001295 ORTHO05D005319 1.1e-45 188.3 188 55.3
CARHR077360 Cardamine hirsuta HOM05D001295 ORTHO05D005319 3.3e-45 186.8 141 66.0
Hma1.2p1_0401F.1_g144800 Hydrangea macrophylla HOM05D001295 ORTHO05D005319 7.3e-45 185.7 128 74.2
FAN15G1214 Fragaria x ananassa HOM05D001295 ORTHO05D005319 6.2e-44 182.6 143 62.2
CsaV3_4G002500 Cucumis sativus L. HOM05D001295 ORTHO05D005319 1.4e-43 181.4 193 54.4
vmacro00675 Vaccinium macrocarpon HOM05D001295 ORTHO05D005319 4.0e-43 179.9 141 66.0
Cpa.g.sc9.324 Carica papaya HOM05D001295 ORTHO05D005319 5.2e-43 179.5 127 69.3
Sabra07G0119200 Salix brachista HOM05D001295 ORTHO05D005319 4.4e-42 176.4 184 53.3
Aa31LG5G13780 Aethionema arabicum HOM05D001295 ORTHO05D005319 1.9e-40 171.0 184 51.6
C01p44730 Brassica napus HOM05D001295 ORTHO05D005319 1.1e-35 155.2 203 39.9
AT2G43465 Arabidopsis thaliana HOM05D001295 ORTHO05D005319 8.4e-33 145.6 186 44.1
A09p42860 Brassica napus HOM05D001295 ORTHO05D005319 3.2e-32 143.7 216 38.0
Haze_01447 Corylus avellana HOM05D001295 ORTHO05D005319 9.3e-32 142.1 72 81.9
Haze_01445 Corylus avellana HOM05D001295 ORTHO05D005319 4.6e-31 139.8 126 56.3
Lj3g0015879 Lotus japonicus HOM05D001295 ORTHO05D005319 5.6e-29 132.9 159 50.9
SalBow5G4879 Salvia bowleyana HOM05D001295 ORTHO05D005319 7.3e-29 132.5 136 50.0
Lalb_Chr14g0372561 Lupinus albus HOM05D001295 ORTHO05D005319 1.4e-27 128.3 63 81.0
BolC2t06464H Brassica oleracea HOM05D001295 ORTHO05D005319 2.4e-24 117.5 154 39.6
Lj3A83T16 Lonicera japonica HOM05D001295 ORTHO05D005319 7.9e-23 112.5 65 84.6
Glyma.13G345802 Glycine max HOM05D001295 ORTHO05D005319 2.2e-17 94.4 124 44.4
Sabra17G0001700 Salix brachista HOM05D001295 ORTHO05D005319 3.2e-16 90.5 109 45.9
Sabra17G0015200 Salix brachista HOM05D001295 ORTHO05D005319 6.2e-12 76.3 178 34.8
Cre16.g668650 Chlamydomonas reinhardtii HOM05D001295 ORTHO05D005319 8.2e-12 75.9 120 39.2
MELO3C001160.2 Cucumis melo HOM05D001295 ORTHO05D005319 4.1e-11 73.6 67 58.2
Sabra17G0001500 Salix brachista HOM05D001295 ORTHO05D005319 4.1e-11 73.6 77 48.1
Sabra17G0000500 Salix brachista HOM05D001295 ORTHO05D005319 1.5e-10 71.6 77 46.8
CBR_g21778 Chara braunii HOM05D001295 ORTHO05D005319 1.3e-09 68.6 128 34.4
Medtr2g027210 Medicago truncatula HOM05D001295 ORTHO05D005319 3.8e-09 67.0 83 44.6


User provided reference genes

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