Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 9.3e-275 949.5 454 100.0
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 2.8e-210 735.3 447 79.6
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.6e-210 734.9 446 78.9
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 4.9e-199 698.0 442 75.8
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 4.1e-198 694.9 429 78.6
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 8.1e-194 680.6 420 75.7
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 8.1e-194 680.6 447 73.2
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 8.9e-193 677.2 437 74.4
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 1.4e-190 669.8 447 71.6
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 9.2e-190 667.2 430 74.2
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 1.0e-188 663.7 440 72.7
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 1.3e-188 663.3 412 75.5
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 2.3e-188 662.5 427 73.3
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 8.7e-188 660.6 449 71.3
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 9.6e-187 657.1 439 71.3
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 8.1e-186 654.1 440 71.4
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 1.4e-185 653.3 439 71.8
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 5.2e-185 651.4 441 71.2
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 1.2e-184 650.2 454 69.8
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 2.6e-184 649.0 440 70.9
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 5.8e-184 647.9 458 68.6
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 1.3e-183 646.7 445 69.7
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.1e-182 643.7 449 69.3
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 1.1e-182 643.7 448 68.8
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 4.2e-182 641.7 413 73.8
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 4.2e-182 641.7 429 69.9
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.4e-182 641.3 377 78.0
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 5.4e-182 641.3 414 72.9
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.3e-180 636.0 420 72.6
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 8.7e-180 634.0 452 66.8
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 1.1e-179 633.6 417 71.5
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 1.9e-179 632.9 456 67.5
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 5.6e-179 631.3 420 72.1
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 1.3e-178 630.2 445 67.2
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.3e-178 630.2 446 67.7
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.6e-178 629.8 405 71.9
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 6.2e-178 627.9 448 66.7
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 1.1e-177 627.1 491 63.1
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 1.1e-177 627.1 446 69.3
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 2.4e-177 625.9 448 68.3
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 3.1e-177 625.5 454 67.2
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 6.9e-177 624.4 401 75.6
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 9.0e-177 624.0 457 65.6
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 2.0e-176 622.9 439 67.4
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 4.5e-176 621.7 457 65.4
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 9.9e-176 620.5 450 66.0
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 9.9e-176 620.5 451 66.5
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 1.3e-175 620.2 396 73.0
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.3e-175 620.2 441 68.7
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 1.7e-175 619.8 457 67.6
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 2.9e-175 619.0 428 69.4
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 6.4e-175 617.8 389 75.8
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 6.4e-175 617.8 466 64.8
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 1.1e-174 617.1 452 65.3
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.9e-174 616.3 445 65.6
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 3.2e-174 615.5 445 64.5
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 9.3e-174 614.0 436 65.4
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 9.3e-174 614.0 452 64.8
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.5e-173 612.1 499 62.1
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 7.9e-173 610.9 452 64.2
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 3.0e-172 609.0 452 65.3
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 3.3e-171 605.5 425 68.2
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 5.6e-171 604.7 452 64.6
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 1.3e-170 603.6 452 64.4
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 2.1e-170 602.8 419 67.3
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 2.1e-170 602.8 452 64.4
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 2.4e-169 599.4 442 63.3
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 1.5e-168 596.7 468 62.6
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 2.0e-168 596.3 425 66.4
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 2.0e-168 596.3 486 60.5
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 7.6e-168 594.3 374 73.3
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 1.3e-167 593.6 371 72.2
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 2.4e-166 589.3 438 65.3
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 1.6e-165 586.6 403 72.2
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 3.5e-165 585.5 441 65.8
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 5.1e-164 581.6 444 64.9
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 2.5e-163 579.3 361 73.7
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 2.4e-161 572.8 343 79.9
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 2.0e-160 569.7 359 71.6
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 3.5e-157 558.9 416 63.2
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 7.9e-157 557.8 371 69.0
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 1.0e-156 557.4 451 61.0
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 3.0e-156 555.8 350 72.9
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 1.9e-155 553.1 360 71.1
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 3.1e-153 545.8 414 63.3
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 2.0e-152 543.1 488 58.2
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.1e-150 537.3 444 61.9
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 1.6e-149 533.5 403 62.8
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 5.1e-148 528.5 359 70.8
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 1.6e-141 506.9 457 57.3
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.8e-138 496.1 307 76.2
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 2.4e-137 493.0 478 54.8
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 6.1e-133 478.4 341 65.7
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 8.8e-132 474.6 282 76.2
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 1.4e-124 450.7 382 59.4
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 3.0e-124 449.5 392 54.3
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 7.5e-123 444.9 357 58.3
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 4.7e-117 425.6 378 59.0
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 1.8e-116 423.7 424 49.3
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.1e-113 414.5 330 56.7
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 2.6e-107 393.3 285 68.1
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 1.0e-95 354.8 245 70.2
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 1.7e-95 354.0 245 70.2
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 8.0e-93 345.1 269 61.3
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 1.4e-89 334.3 204 73.5
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 1.4e-89 334.3 204 73.5
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 1.6e-88 330.9 252 62.7
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 3.0e-87 326.6 391 45.0
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 6.6e-87 325.5 350 45.1
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 4.3e-86 322.8 174 82.8
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 1.4e-81 307.8 241 63.1
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 1.2e-80 304.7 241 62.2
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 3.8e-66 256.5 370 38.1
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 4.2e-65 253.1 201 61.2
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 1.2e-64 251.5 194 62.4
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 2.7e-64 250.4 342 40.9
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 4.3e-54 216.5 188 60.1
SEGI_33860 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 7.6e-51 205.7 234 48.7
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 2.7e-48 197.2 148 62.8
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 8.2e-45 185.7 104 78.8
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 4.3e-38 163.3 315 34.9
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 4.8e-37 159.8 92 72.8
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 3.0e-31 140.6 74 82.4
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 2.8e-29 134.0 73 80.8
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.4e-25 121.7 330 30.0
MD10G1034600 Malus domestica HOM05D005921 ORTHO05D007374 5.5e-25 119.8 101 57.4
Zm00001eb035620 Zea mays HOM05D005921 ORTHO05D007374 1.4e-20 105.1 55 80.0
Pp3c27_7150 Physcomitrium patens HOM05D005921 ORTHO05D007374 4.5e-19 100.1 372 25.0
Sabra02G0051300 Salix brachista HOM05D005921 ORTHO05D007374 1.0e-07 62.4 37 70.3
CBR_g24397 Chara braunii HOM05D005921 ORTHO05D132278 4.4e-06 57.0 83 28.9


User provided reference genes

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