Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 1.2e-210 736.5 441 100.0
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 7.0e-118 428.3 467 61.2
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.5e-115 419.9 428 61.0
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 2.8e-114 416.4 447 58.4
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 2.8e-114 416.4 471 61.8
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.4e-113 414.1 453 58.7
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 6.8e-113 411.8 465 58.7
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 1.3e-108 397.5 487 61.4
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 3.0e-108 396.4 448 58.7
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 1.1e-107 394.4 382 64.1
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 5.6e-107 392.1 460 61.1
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.3e-107 391.7 461 62.3
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.3e-107 391.7 436 56.9
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 1.2e-106 391.0 487 54.2
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 2.1e-106 390.2 460 59.3
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.8e-106 389.8 473 61.1
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.4e-105 387.5 473 62.4
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 8.9e-105 384.8 448 54.7
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 7.5e-104 381.7 462 55.4
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 2.9e-103 379.8 458 54.8
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 2.9e-103 379.8 302 69.5
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 4.9e-103 379.0 463 54.4
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 5.4e-102 375.6 463 54.6
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 7.1e-102 375.2 340 61.8
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 6.0e-101 372.1 458 58.3
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 1.3e-100 370.9 490 53.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 1.5e-99 367.5 482 55.0
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 3.3e-99 366.3 244 77.9
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 9.5e-99 364.8 474 57.6
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 1.2e-98 364.4 248 77.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.6e-98 364.0 451 53.0
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 2.8e-98 363.2 457 61.9
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 2.8e-98 363.2 458 59.8
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.3e-97 360.1 299 68.2
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 5.2e-97 359.0 474 58.4
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 5.2e-97 359.0 255 72.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 6.8e-97 358.6 297 67.3
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 6.8e-97 358.6 297 68.0
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 1.2e-96 357.8 474 55.3
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 1.2e-96 357.8 403 56.6
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.5e-96 357.5 271 71.2
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 2.0e-96 357.1 459 52.5
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 2.6e-96 356.7 511 49.3
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 3.4e-96 356.3 451 56.3
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 5.8e-96 355.5 255 71.4
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 5.8e-96 355.5 250 72.4
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 7.6e-96 355.1 471 55.8
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 7.6e-96 355.1 438 54.6
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.3e-95 354.4 250 72.0
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 1.3e-95 354.4 462 52.8
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.3e-95 354.4 464 51.1
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 2.9e-95 353.2 464 59.1
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 3.7e-95 352.8 270 68.9
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 3.7e-95 352.8 270 68.9
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 8.3e-95 351.7 285 66.0
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 1.9e-94 350.5 297 64.0
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 2.4e-94 350.1 250 70.8
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 3.2e-94 349.7 257 70.0
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 3.2e-94 349.7 294 65.0
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 5.4e-94 349.0 505 48.3
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 1.2e-93 347.8 455 56.0
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.6e-93 347.4 437 56.1
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 4.6e-93 345.9 465 51.8
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 1.0e-92 344.7 382 58.1
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 1.7e-92 344.0 258 70.2
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 3.9e-92 342.8 472 53.8
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 8.6e-92 341.7 432 56.0
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 1.9e-91 340.5 467 56.1
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 2.5e-91 340.1 298 64.1
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 2.5e-91 340.1 447 56.4
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.5e-91 340.1 454 55.1
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 3.3e-91 339.7 251 69.7
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 3.3e-91 339.7 251 69.7
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 4.3e-91 339.3 434 51.2
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 7.3e-91 338.6 457 52.7
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.2e-90 337.8 261 67.4
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.1e-90 337.0 453 53.4
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 2.8e-90 336.7 474 50.0
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 2.8e-90 336.7 473 53.9
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 8.1e-90 335.1 460 51.7
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 1.1e-89 334.7 472 53.8
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.8e-89 334.0 380 56.1
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 2.4e-89 333.6 345 60.0
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.4e-89 333.6 437 54.5
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 6.8e-89 332.0 480 52.1
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 6.8e-89 332.0 250 69.6
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 3.4e-88 329.7 469 55.0
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 4.4e-88 329.3 317 59.6
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 1.3e-87 327.8 306 61.8
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 1.3e-87 327.8 288 63.5
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 1.3e-87 327.8 272 65.4
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 3.8e-87 326.2 317 57.4
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 3.8e-87 326.2 490 52.4
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 6.4e-87 325.5 250 66.4
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.9e-86 323.9 459 51.9
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.4e-86 323.6 246 67.1
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.4e-86 323.6 384 52.1
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 3.2e-86 323.2 288 59.7
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 3.5e-85 319.7 384 52.3
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.5e-85 319.7 471 48.8
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 4.6e-85 319.3 491 47.7
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 2.3e-84 317.0 255 64.3
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 5.1e-84 315.8 278 61.5
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 1.9e-83 313.9 244 66.0
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 2.5e-83 313.5 438 47.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 1.3e-82 311.2 446 47.3
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 4.8e-82 309.3 248 65.7
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 6.2e-82 308.9 429 50.1
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 1.2e-77 294.7 444 47.1
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 1.6e-77 294.3 474 50.4
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 2.7e-77 293.5 213 70.0
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 7.9e-77 292.0 439 45.6
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 1.0e-76 291.6 428 44.4
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 2.5e-75 287.0 395 48.1
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.4e-73 281.2 480 49.4
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 1.8e-68 264.2 260 53.1
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 1.8e-65 254.2 460 45.0
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.1e-59 235.0 273 47.3
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 2.5e-54 217.2 294 44.6
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 8.5e-47 192.2 246 44.7
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 3.0e-44 183.7 285 41.4
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 2.5e-43 180.6 112 80.4
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 4.3e-43 179.9 271 38.4
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 8.5e-39 165.6 335 33.7
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 1.8e-36 157.9 343 42.3
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 5.1e-36 156.4 260 35.4
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 2.2e-34 151.0 248 39.5
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 5.3e-33 146.4 89 77.5
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 1.0e-31 142.1 282 52.8
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 2.9e-31 140.6 216 38.4
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.9e-30 137.9 182 46.2
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 9.4e-30 135.6 227 38.8
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.5e-27 128.3 222 33.8
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.3e-26 125.2 160 45.6
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 1.8e-25 121.3 241 31.5
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 5.3e-25 119.8 218 30.7
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 1.2e-24 118.6 308 45.1
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 3.5e-24 117.1 278 29.1
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 4.2e-22 110.2 220 35.5
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 2.7e-13 80.9 110 42.7
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 4.7e-13 80.1 129 38.8
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 5.2e-12 76.6 211 30.3
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 5.2e-12 76.6 105 45.7
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 8.8e-12 75.9 179 31.8
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 1.5e-11 75.1 177 36.2
Zm00001eb342170 Zea mays HOM05D004657 ORTHO05D005562 1.3e-10 72.0 105 41.9
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 4.1e-09 67.0 123 31.7
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 5.4e-09 66.6 115 39.1
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.3e-07 62.0 43 55.8
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 5.0e-07 60.1 54 46.3
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 9.5e-06 55.8 137 29.9


User provided reference genes

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