Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 2.5e-265 918.3 484 100.0
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.9e-194 681.8 488 76.8
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 5.0e-194 681.4 508 74.8
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 1.3e-189 666.8 377 87.0
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 2.3e-186 656.0 455 75.6
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 6.6e-186 654.4 376 86.7
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 1.1e-185 653.7 374 85.6
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.9e-185 652.9 369 86.2
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 4.3e-185 651.7 358 89.4
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 7.3e-185 651.0 371 86.5
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.4e-183 646.7 371 86.0
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.8e-183 646.4 374 84.8
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 3.1e-183 645.6 363 87.3
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 4.0e-183 645.2 380 83.7
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 5.2e-183 644.8 365 87.9
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 6.8e-183 644.4 380 83.7
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 8.9e-183 644.0 380 83.4
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 4.4e-182 641.7 362 86.5
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 7.6e-182 641.0 363 87.1
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.3e-181 640.2 382 83.5
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 4.9e-181 638.3 361 85.6
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 1.1e-180 637.1 363 86.8
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 1.1e-180 637.1 471 72.0
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.9e-180 636.3 341 91.8
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 2.4e-180 636.0 350 90.0
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 9.2e-180 634.0 371 83.8
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.2e-179 633.6 377 85.7
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 1.2e-179 633.6 380 83.7
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 3.5e-179 632.1 357 88.0
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 4.6e-179 631.7 364 85.2
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 6.0e-179 631.3 471 72.4
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.7e-178 629.8 360 86.4
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 1.7e-178 629.8 363 86.5
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 2.3e-178 629.4 374 82.1
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 5.1e-178 628.2 363 86.5
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 8.7e-178 627.5 371 85.2
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 8.7e-178 627.5 374 82.4
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 1.1e-177 627.1 362 83.7
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 1.5e-177 626.7 381 83.2
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 1.5e-177 626.7 377 83.6
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 3.3e-177 625.5 377 83.3
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 5.6e-177 624.8 469 70.4
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 7.3e-177 624.4 374 82.4
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 2.1e-176 622.9 363 86.0
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 4.7e-176 621.7 363 84.0
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 8.1e-176 620.9 361 83.9
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 1.4e-175 620.2 357 84.9
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 2.4e-175 619.4 360 84.7
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 2.4e-175 619.4 360 84.7
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 3.1e-175 619.0 361 83.1
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.0e-175 618.6 360 84.4
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.0e-175 618.6 360 84.4
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 5.2e-175 618.2 361 83.1
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 5.2e-175 618.2 361 83.1
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 9.0e-175 617.5 361 83.4
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.5e-174 616.7 360 84.2
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.0e-174 616.3 357 84.6
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 5.8e-174 614.8 344 88.1
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 5.8e-174 614.8 359 83.0
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 5.8e-174 614.8 359 83.0
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 5.8e-174 614.8 361 82.8
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 9.9e-174 614.0 358 84.1
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 2.2e-173 612.8 356 84.8
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 2.2e-173 612.8 357 84.6
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 3.8e-173 612.1 361 82.3
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 4.9e-173 611.7 350 85.7
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 6.4e-173 611.3 362 84.3
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 1.1e-172 610.5 361 82.0
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 1.4e-172 610.1 371 81.7
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 1.4e-172 610.1 349 87.4
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 3.2e-172 609.0 350 86.0
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 5.4e-172 608.2 376 80.1
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 7.1e-172 607.8 370 80.8
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 7.1e-172 607.8 370 81.1
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 7.1e-172 607.8 351 84.9
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 9.3e-172 607.4 359 83.6
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.6e-171 606.7 375 80.0
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 6.0e-171 604.7 362 81.2
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-170 603.6 391 76.2
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 3.0e-170 602.4 361 81.2
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 5.1e-170 601.7 361 80.9
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 5.1e-170 601.7 361 80.9
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 1.1e-169 600.5 367 83.1
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 2.5e-169 599.4 377 80.4
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.8e-168 595.9 360 82.2
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.1e-168 594.3 474 65.8
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 1.2e-166 590.5 342 87.1
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 4.9e-165 585.1 357 80.7
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 5.4e-164 581.6 342 83.0
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 5.4e-164 581.6 343 83.4
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 1.2e-163 580.5 361 80.3
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 7.4e-161 571.2 343 82.2
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 1.8e-159 566.6 314 90.1
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 7.6e-158 561.2 356 79.5
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 2.9e-157 559.3 358 76.8
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 1.1e-156 557.4 405 71.4
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.9e-156 556.6 394 74.4
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 3.2e-156 555.8 298 90.6
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 4.3e-153 545.4 383 74.2
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 4.3e-153 545.4 435 67.4
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 7.4e-153 544.7 333 83.8
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 6.9e-151 538.1 362 75.1
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 8.7e-146 521.2 280 91.8
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 8.7e-146 521.2 319 81.5
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 1.1e-145 520.8 314 80.9
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 2.5e-145 519.6 368 70.1
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 4.3e-145 518.8 353 72.8
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 8.2e-144 514.6 366 70.2
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 2.4e-143 513.1 344 74.1
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 2.4e-135 486.5 345 68.4
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 6.9e-135 485.0 379 71.8
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.5e-134 483.8 474 59.7
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 2.6e-134 483.0 339 71.7
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 4.4e-129 465.7 270 84.4
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 3.4e-126 456.1 269 85.1
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 2.6e-121 439.9 272 79.4
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.8e-120 436.4 251 86.1
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 2.8e-120 436.4 260 83.1
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 3.5e-110 402.9 398 62.3
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 2.3e-90 337.0 182 89.6
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 1.4e-87 327.8 200 80.5
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 2.7e-78 297.0 184 79.3
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 1.8e-74 284.3 347 44.1
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 2.0e-73 280.8 335 46.0
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 6.8e-66 255.8 357 46.8
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 3.5e-62 243.4 143 81.1
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.0e-61 241.9 132 87.9
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 9.9e-57 225.3 334 36.5
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 3.2e-55 220.3 121 82.6
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.2e-49 201.8 378 37.0
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.2e-46 191.8 109 86.2
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.8e-41 172.9 109 83.5
GSVIVG01029613001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.9e-36 157.9 102 78.4
CARHR041770 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.4e-31 141.7 129 59.7
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 9.3e-31 139.0 101 69.3
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 1.0e-29 135.6 79 83.5
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 1.0e-29 135.6 80 81.2
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 8.7e-29 132.5 109 64.2
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 2.5e-28 131.0 84 73.8
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 3.1e-26 124.0 79 75.9
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 3.1e-26 124.0 79 75.9
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 3.1e-26 124.0 79 75.9
GSVIVG01029603001 Vitis vinifera HOM05D004748 ORTHO05D005825 3.1e-26 124.0 64 95.3
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 1.3e-24 118.6 79 72.2
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 1.3e-24 118.6 79 72.2
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 5.0e-24 116.7 79 70.9
CAN.G126.34 Capsicum annuum HOM05D004748 ORTHO05D005825 8.5e-24 115.9 187 39.6
RcHm_v2.0_Chr1g0341791 Rosa chinensis HOM05D004748 ORTHO05D005825 1.4e-18 98.6 64 75.0
RcHm_v2.0_Chr7g0197681 Rosa chinensis HOM05D004748 ORTHO05D005825 7.9e-14 82.8 54 77.8
A10p03860 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-13 81.6 86 51.2
arahy.Tifrunner.gnm1.ann1.W4KKVA Arachis hypogaea HOM05D005785 ORTHO05D007962 5.1e-13 80.1 55 74.5
GSVIVG01029622001 Vitis vinifera HOM05D004748 ORTHO05D005825 5.3e-10 70.1 36 97.2
BraA10t42660Z Brassica rapa HOM05D004748 ORTHO05D005825 1.2e-09 68.9 67 55.2
HanXRQChr10g0284771 Helianthus annuus HOM05D004748 ORTHO05D005825 5.9e-09 66.6 35 85.7
SEGI_11704 Sequoiadendron giganteum HOM05D004748 ORTHO05D006250 1.3e-08 65.5 37 81.1
HanXRQChr12g0383231 Helianthus annuus HOM05D002835 ORTHO05D003008 2.2e-08 64.7 62 53.2
FAN03G2435 Fragaria x ananassa HOM05D000153 ORTHO05D000118 5.5e-07 60.1 36 75.0


User provided reference genes

Program Settings