Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.9e-69 265.0 124 100.0
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 2.7e-67 258.5 124 96.8
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 3.5e-67 258.1 124 96.8
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.1e-55 218.0 107 95.3
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 5.1e-42 174.5 86 95.3
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 7.7e-38 160.6 101 75.2
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 3.8e-37 158.3 86 83.7
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 1.1e-36 156.8 96 77.1
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 3.2e-36 155.2 86 83.7
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.4e-34 149.8 85 80.0
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.8e-34 149.4 86 79.1
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 2.3e-34 149.1 101 63.4
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 3.9e-34 148.3 85 77.6
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 6.7e-34 147.5 88 77.3
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 8.8e-34 147.1 85 76.5
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 1.1e-33 146.7 89 70.8
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 9.7e-33 143.7 88 73.9
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 1.7e-32 142.9 86 74.4
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.7e-32 142.9 86 75.6
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 2.8e-32 142.1 88 75.0
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 2.8e-32 142.1 86 73.3
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 3.7e-32 141.7 88 75.0
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 4.8e-32 141.4 86 75.6
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 4.8e-32 141.4 86 73.3
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 6.3e-32 141.0 101 63.4
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 6.3e-32 141.0 86 73.3
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 8.2e-32 140.6 86 73.3
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 8.2e-32 140.6 86 70.9
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 8.2e-32 140.6 101 58.4
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 1.1e-31 140.2 101 62.4
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 1.1e-31 140.2 101 64.4
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 1.4e-31 139.8 101 62.4
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 1.4e-31 139.8 86 69.8
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-31 139.8 86 69.8
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.4e-31 139.8 86 69.8
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-31 139.4 86 69.8
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-31 139.4 86 69.8
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 1.8e-31 139.4 86 69.8
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.8e-31 139.4 86 74.4
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.8e-31 139.4 85 74.1
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 1.8e-31 139.4 91 70.3
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 1.8e-31 139.4 91 70.3
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 2.4e-31 139.0 86 73.3
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 2.4e-31 139.0 88 63.6
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 2.4e-31 139.0 85 75.3
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 2.4e-31 139.0 93 65.6
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 2.4e-31 139.0 86 72.1
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 3.1e-31 138.7 88 69.3
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.1e-31 138.7 86 72.1
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.1e-31 138.7 88 72.7
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 4.1e-31 138.3 101 63.4
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 4.1e-31 138.3 113 60.2
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 5.3e-31 137.9 101 61.4
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 5.3e-31 137.9 101 61.4
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 5.3e-31 137.9 85 71.8
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 5.3e-31 137.9 86 74.4
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 7.0e-31 137.5 86 72.1
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.0e-31 137.5 86 68.6
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.0e-31 137.5 86 68.6
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 7.0e-31 137.5 101 64.4
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 7.0e-31 137.5 103 63.1
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 9.1e-31 137.1 101 60.4
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 9.1e-31 137.1 129 52.7
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 1.6e-30 136.3 86 69.8
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 1.6e-30 136.3 88 69.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 1.6e-30 136.3 85 76.5
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.0e-30 136.0 86 69.8
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 2.6e-30 135.6 102 62.7
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.6e-30 135.6 129 52.7
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 2.6e-30 135.6 85 71.8
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 2.6e-30 135.6 110 63.6
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 3.5e-30 135.2 113 57.5
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 3.5e-30 135.2 85 69.4
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 5.9e-30 134.4 129 52.7
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 5.9e-30 134.4 85 71.8
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 7.7e-30 134.0 119 53.8
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.7e-30 134.0 88 68.2
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 7.7e-30 134.0 88 68.2
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.0e-29 133.7 86 68.6
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.0e-29 133.7 86 68.6
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 1.0e-29 133.7 86 68.6
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.3e-29 133.3 85 69.4
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 1.3e-29 133.3 101 60.4
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 2.9e-29 132.1 88 64.8
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 2.9e-29 132.1 85 70.6
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 3.8e-29 131.7 86 68.6
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 3.8e-29 131.7 85 67.1
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.8e-29 131.7 88 63.6
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.0e-29 131.3 129 52.7
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 5.0e-29 131.3 129 52.7
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 5.0e-29 131.3 84 71.4
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 6.5e-29 131.0 86 66.3
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 6.5e-29 131.0 88 65.9
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 8.5e-29 130.6 85 69.4
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.1e-28 130.2 86 66.3
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 1.5e-28 129.8 85 69.4
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.2e-28 128.6 88 64.8
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 7.2e-28 127.5 98 62.2
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.2e-27 126.7 84 69.0
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 6.1e-27 124.4 97 59.8
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 8.0e-27 124.0 85 67.1
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 2.3e-26 122.5 88 65.9
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 5.2e-26 121.3 88 61.4
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.5e-25 119.8 106 52.8
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 3.3e-25 118.6 97 56.7
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 9.7e-25 117.1 98 61.2
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.3e-24 116.7 102 54.9
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 1.3e-24 116.7 78 64.1
SalBow1G4039 Salvia bowleyana HOM05D004561 ORTHO05D005315 1.2e-22 110.2 67 68.7
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 2.0e-22 109.4 93 53.8
SalBow1G5331 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.7e-22 109.0 67 68.7
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 4.5e-22 108.2 86 59.3
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 5.9e-22 107.8 68 76.5
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 7.7e-22 107.5 93 53.8
SalBow1G2796 Salvia bowleyana HOM05D004561 ORTHO05D005315 7.7e-22 107.5 67 67.2
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 7.7e-22 107.5 93 55.9
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 1.3e-21 106.7 92 54.3
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 8.5e-21 104.0 88 47.7
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 2.5e-20 102.4 101 45.5
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.5e-20 102.4 75 60.0
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 7.2e-20 100.9 70 67.1
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 4.7e-19 98.2 64 67.2
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 1.0e-18 97.1 88 50.0
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 2.3e-18 95.9 85 54.1
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 6.8e-18 94.4 88 46.6
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 1.2e-17 93.6 114 44.7
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 7.5e-17 90.9 71 62.0
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 6.3e-16 87.8 85 54.1
Carub.0339s0001 Capsella rubella HOM05D004561 ORTHO05D005315 1.8e-15 86.3 94 47.9
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 2.4e-15 85.9 73 56.2
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 1.2e-14 83.6 52 65.4
ECA236G3170 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.6e-14 83.2 53 62.3
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 3.5e-14 82.0 59 64.4
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 5.9e-14 81.3 88 40.9
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 5.9e-14 81.3 49 73.5
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.0e-13 80.5 43 76.7
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 2.9e-13 79.0 43 79.1
Cpa.g.sc437.1 Carica papaya HOM05D004561 ORTHO05D005315 3.8e-13 78.6 54 63.0
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 7.2e-12 74.3 50 66.0
Ca_17309_v3 Cicer arietinum L. HOM05D002967 ORTHO05D003281 1.2e-09 67.0 61 50.8
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 7.5e-09 64.3 86 33.7
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 1.8e-07 59.7 36 75.0


User provided reference genes

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