Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0006622 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.9e-58 228.0 123 100.0
CSS0004625 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 3.3e-49 198.4 123 89.4
Actinidia27107 Actinidia chinensis HOM05D001997 ORTHO05D005560 5.6e-49 197.6 121 90.1
Actinidia11445 Actinidia chinensis HOM05D001997 ORTHO05D005560 2.8e-48 195.3 121 90.1
CSS0005460 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.9e-47 190.7 121 86.0
CSS0042570 Camellia sinensis var. sinensis HOM05D001997 ORTHO05D005560 6.9e-47 190.7 121 86.0
Rhsim02G0083500 Rhododendron simsii HOM05D001997 ORTHO05D005560 4.5e-46 188.0 118 87.3
Dinv02939 Davidia involucrata HOM05D001997 ORTHO05D005560 7.6e-46 187.2 122 83.6
QL10p054519 Quercus lobata HOM05D001997 ORTHO05D005560 2.9e-45 185.3 117 86.3
Dinv33196 Davidia involucrata HOM05D001997 ORTHO05D005560 3.8e-45 184.9 122 86.1
QL10p053341 Quercus lobata HOM05D001997 ORTHO05D005560 1.4e-44 183.0 117 85.5
Manes.16G067100 Manihot esculenta HOM05D001997 ORTHO05D005560 3.2e-44 181.8 121 81.8
TAR362G0574 Trochodendron aralioides HOM05D001997 ORTHO05D005560 9.3e-44 180.3 117 83.8
Hma1.2p1_0855F.1_g228990 Hydrangea macrophylla HOM05D001997 ORTHO05D005560 1.2e-43 179.9 122 81.1
Manes.04G036800 Manihot esculenta HOM05D001997 ORTHO05D005560 2.1e-43 179.1 121 80.2
CiPaw.02G100900 Carya illinoinensis HOM05D001997 ORTHO05D005560 3.5e-43 178.3 117 83.8
Oeu032138.1 Olea europaea HOM05D001997 ORTHO05D005560 4.6e-43 177.9 122 80.3
SalBow2G2973 Salvia bowleyana HOM05D001997 ORTHO05D005560 4.6e-43 177.9 112 84.8
TWI15G0247 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 4.6e-43 177.9 117 82.1
Haze_01373 Corylus avellana HOM05D001997 ORTHO05D004620 6.0e-43 177.6 117 83.8
Eucgr.A00017 Eucalyptus grandis HOM05D001997 ORTHO05D005560 6.0e-43 177.6 113 82.3
QL04p073793 Quercus lobata HOM05D001997 ORTHO05D005560 1.0e-42 176.8 119 81.5
MELO3C002757.2 Cucumis melo HOM05D001997 ORTHO05D005560 1.3e-42 176.4 116 81.9
CsaV3_1G036760 Cucumis sativus L. HOM05D001997 ORTHO05D005560 1.3e-42 176.4 116 81.9
MSTRG.22024 Avicennia marina HOM05D001997 ORTHO05D005560 3.0e-42 175.3 104 86.5
TWI63G1293 Tripterygium wilfordii HOM05D001997 ORTHO05D005560 3.0e-42 175.3 117 81.2
LjContig00312_ERROPOS870357g0002022 Lotus japonicus HOM05D001997 ORTHO05D005560 5.1e-42 174.5 121 79.3
Manes.11G130400 Manihot esculenta HOM05D001997 ORTHO05D005560 5.1e-42 174.5 121 79.3
ClCG03G006590 Citrullus lanatus HOM05D001997 ORTHO05D005560 6.7e-42 174.1 116 80.2
unitig_27.g24921 Utricularia gibba HOM05D001997 ORTHO05D005560 6.7e-42 174.1 117 79.5
Migut.N03073 Erythranthe guttata HOM05D001997 ORTHO05D005560 8.7e-42 173.7 121 77.7
Duzib268G1453 Durio zibethinus HOM05D001997 ORTHO05D005560 1.1e-41 173.3 117 81.2
VMungo1127G1119 Vigna mungo HOM05D001997 ORTHO05D005560 1.1e-41 173.3 117 80.3
Cc10_g09020 Coffea canephora HOM05D001997 ORTHO05D005560 1.5e-41 172.9 117 81.2
Phvul.011G004600 Phaseolus vulgaris HOM05D001997 ORTHO05D005560 2.5e-41 172.2 117 80.3
PGR004G0495 Punica granatum HOM05D001997 ORTHO05D005560 2.5e-41 172.2 118 80.5
Aqoxy3G00613 Aquilegia oxysepala HOM05D001997 ORTHO05D005560 3.3e-41 171.8 120 79.2
Sed0015466 Sechium edule HOM05D001997 ORTHO05D005560 5.6e-41 171.0 116 76.7
TPR.G15125 Trifolium pratense HOM05D001997 ORTHO05D005560 5.6e-41 171.0 117 79.5
CAN.G103.22 Capsicum annuum HOM05D001997 ORTHO05D005560 7.4e-41 170.6 121 76.9
Nitab4.5_0001586g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 9.6e-41 170.2 121 76.9
Nitab4.5_0004056g0040 Nicotiana tabacum HOM05D001997 ORTHO05D005560 9.6e-41 170.2 121 76.9
Migut.M00095 Erythranthe guttata HOM05D001997 ORTHO05D005560 1.3e-40 169.9 121 76.0
Medtr3g110098 Medicago truncatula HOM05D001997 ORTHO05D005560 1.3e-40 169.9 117 78.6
Potri.013G125200 Populus trichocarpa HOM05D001997 ORTHO05D005560 1.3e-40 169.9 118 78.0
Glyma.09G232500 Glycine max HOM05D001997 ORTHO05D005560 1.6e-40 169.5 117 78.6
Prupe.1G570200 Prunus persica HOM05D001997 ORTHO05D005560 1.6e-40 169.5 117 77.8
Thecc.04G168000 Theobroma cacao HOM05D001997 ORTHO05D005560 1.6e-40 169.5 100 85.0
Gohir.D02G109200 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.8e-40 168.7 121 76.9
Gorai.005G124400 Gossypium raimondii HOM05D001997 ORTHO05D005560 2.8e-40 168.7 121 76.9
MD15G1424200 Malus domestica HOM05D001997 ORTHO05D005560 2.8e-40 168.7 117 77.8
SGA_v2.0_scaffold25G10995 Striga asiatica HOM05D000987 ORTHO05D000831 2.8e-40 168.7 127 75.6
PGSC0003DMG400016301 Solanum tuberosum HOM05D001997 ORTHO05D005560 3.7e-40 168.3 122 74.6
HanXRQChr14g0432491 Helianthus annuus HOM05D001997 ORTHO05D005560 4.8e-40 167.9 130 70.0
Solyc06g053385.2 Solanum lycopersicum HOM05D001997 ORTHO05D005560 4.8e-40 167.9 122 74.6
Sopen06g018440 Solanum pennellii HOM05D001997 ORTHO05D005560 4.8e-40 167.9 122 74.6
arahy.Tifrunner.gnm1.ann1.U4TVD9 Arachis hypogaea HOM05D001997 ORTHO05D005560 6.2e-40 167.5 117 78.6
CiPaw.01G171400 Carya illinoinensis HOM05D001997 ORTHO05D005560 1.1e-39 166.8 121 77.7
Psat2g000880 Pisum sativum HOM05D001997 ORTHO05D005560 1.1e-39 166.8 117 76.9
Lalb_Chr02g0159681 Lupinus albus HOM05D001997 ORTHO05D005560 1.8e-39 166.0 116 78.4
Gohir.A02G091400 Gossypium hirsutum HOM05D001997 ORTHO05D005560 2.4e-39 165.6 121 76.0
arahy.Tifrunner.gnm1.ann1.HCPJ2X Arachis hypogaea HOM05D001997 ORTHO05D005560 4.0e-39 164.9 117 76.9
A04p32920 Brassica napus HOM05D001997 ORTHO05D005560 5.3e-39 164.5 107 79.4
FAN13G1284 Fragaria x ananassa HOM05D001997 ORTHO05D005560 5.3e-39 164.5 100 84.0
Peaxi162Scf00180g00117 Petunia axillaris HOM05D001997 ORTHO05D005560 6.9e-39 164.1 121 74.4
AL4G42460 Arabidopsis lyrata HOM05D001997 ORTHO05D005560 9.0e-39 163.7 119 74.8
BcaB06g29333 Brassica carinata HOM05D001997 ORTHO05D005560 1.2e-38 163.3 122 73.0
FvH4_5g22590 Fragaria vesca HOM05D001997 ORTHO05D005560 1.2e-38 163.3 99 83.8
FAN04G0119 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-38 163.3 99 83.8
FAN08G3153 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-38 163.3 99 83.8
FAN18G2915 Fragaria x ananassa HOM05D001997 ORTHO05D005560 1.2e-38 163.3 99 83.8
arahy.Tifrunner.gnm1.ann1.NB68NZ Arachis hypogaea HOM05D001997 ORTHO05D005560 1.5e-38 162.9 117 76.9
AUR62026408 Chenopodium quinoa HOM05D001997 ORTHO05D005560 1.5e-38 162.9 102 82.4
BcaC02g12374 Brassica carinata HOM05D001997 ORTHO05D005560 2.0e-38 162.5 115 76.5
C04p04630 Brassica napus HOM05D001997 ORTHO05D005560 2.0e-38 162.5 115 76.5
BolC4t22094H Brassica oleracea HOM05D001997 ORTHO05D005560 2.0e-38 162.5 115 76.5
Carub.0004s2617 Capsella rubella HOM05D001997 ORTHO05D005560 2.0e-38 162.5 119 73.9
Ciclev10022891m.g Citrus clementina HOM05D001997 ORTHO05D005560 2.0e-38 162.5 116 73.3
Ah.07g202650 Amaranthus hybridus HOM05D001997 ORTHO05D005560 3.4e-38 161.8 118 72.9
Nn1g09687 Nelumbo nucifera HOM05D001997 ORTHO05D005560 3.4e-38 161.8 113 76.1
BcaB01g03370 Brassica carinata HOM05D001997 ORTHO05D005560 4.5e-38 161.4 115 75.7
BcaB02g08911 Brassica carinata HOM05D001997 ORTHO05D005560 4.5e-38 161.4 115 75.7
BraA04t18752Z Brassica rapa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 115 75.7
AUR62026225 Chenopodium quinoa HOM05D001997 ORTHO05D005560 4.5e-38 161.4 115 77.4
RcHm_v2.0_Chr7g0210361 Rosa chinensis HOM05D001997 ORTHO05D005560 4.5e-38 161.4 99 82.8
Lj3g0018936 Lotus japonicus HOM05D001997 ORTHO05D005560 5.8e-38 161.0 123 74.0
EL10Ac3g06063 Beta vulgaris HOM05D001997 ORTHO05D005560 9.9e-38 160.2 102 82.4
Atru.chr4.1389 Acer truncatum HOM05D001997 ORTHO05D005560 1.3e-37 159.8 115 74.8
MD08G1231600 Malus domestica HOM05D001997 ORTHO05D005560 1.3e-37 159.8 117 75.2
CARHR138820 Cardamine hirsuta HOM05D001997 ORTHO05D005560 1.7e-37 159.5 100 82.0
Sp4g25740 Schrenkiella parvula HOM05D001997 ORTHO05D005560 1.7e-37 159.5 116 72.4
THA.LOC104802323 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.7e-37 159.5 117 72.6
A05p03900 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-37 158.7 115 74.8
BraA03t11647Z Brassica rapa HOM05D001997 ORTHO05D005560 2.9e-37 158.7 106 77.4
BraA05t19377Z Brassica rapa HOM05D001997 ORTHO05D005560 2.9e-37 158.7 115 74.8
A03p24380 Brassica napus HOM05D001997 ORTHO05D005560 3.8e-37 158.3 106 76.4
Aa31LG1G25360 Aethionema arabicum HOM05D001997 ORTHO05D005560 6.4e-37 157.5 116 72.4
Thhalv10001685m.g Eutrema salsugineum HOM05D001997 ORTHO05D005560 1.1e-36 156.8 116 70.7
HPP92_004665 Vanilla planifolia HOM05D001997 ORTHO05D005560 1.1e-36 156.8 112 72.3
Sc01g0006970 Simmondsia chinensis HOM05D001997 ORTHO05D005560 1.4e-36 156.4 117 73.5
BcaC01g05223 Brassica carinata HOM05D001997 ORTHO05D005560 1.9e-36 156.0 119 72.3
C03p29060 Brassica napus HOM05D001997 ORTHO05D005560 1.9e-36 156.0 119 72.3
BolC3t15260H Brassica oleracea HOM05D001997 ORTHO05D005560 1.9e-36 156.0 119 72.3
Ah.13g073580 Amaranthus hybridus HOM05D000242 ORTHO05D005560 2.4e-36 155.6 98 79.6
Lsat_1_v5_gn_3_138061 Lactuca sativa HOM05D001997 ORTHO05D005560 3.2e-36 155.2 96 80.2
CANSAT56G1366 Cannabis sativa HOM05D001997 ORTHO05D005560 4.2e-36 154.8 107 75.7
CANSAT56G3121 Cannabis sativa HOM05D001997 ORTHO05D005560 1.2e-35 153.3 107 74.8
THA.LOC104819704 Tarenaya hassleriana HOM05D001997 ORTHO05D005560 1.2e-35 153.3 116 70.7
PSO017G7267 Papaver somniferum HOM05D001997 ORTHO05D005560 3.5e-35 151.8 122 67.2
Glyma.12G004000 Glycine max HOM05D001997 ORTHO05D005560 2.3e-34 149.1 103 78.6
Os04g0623700 Oryza sativa ssp. japonica HOM05D001997 ORTHO05D005560 6.7e-34 147.5 107 68.2
PSO675G0853 Papaver somniferum HOM05D001997 ORTHO05D005560 8.7e-34 147.1 122 65.6
Cpa.g.sc9.355 Carica papaya HOM05D001997 ORTHO05D005560 1.1e-33 146.7 107 74.8
GSVIVG01038131001 Vitis vinifera HOM05D001997 ORTHO05D005560 6.2e-32 141.0 107 75.7
MBI08_g25560_MAGBIO Magnolia biondii HOM05D001997 ORTHO05D005560 1.1e-31 140.2 121 64.5
ATR0075G039 Amborella trichopoda HOM05D001997 ORTHO05D005560 1.4e-31 139.8 120 66.7
Zm00001eb070260 Zea mays HOM05D001997 ORTHO05D005560 1.8e-31 139.4 128 59.4
FAN18G1136 Fragaria x ananassa HOM05D001997 ORTHO05D005560 2.0e-30 136.0 85 81.2
AT2G43640 Arabidopsis thaliana HOM05D001997 ORTHO05D005560 2.6e-30 135.6 119 65.5
DCAR_003034 Daucus carota HOM05D001997 ORTHO05D005560 1.3e-29 133.3 104 71.2
Atru.chr12.1238 Acer truncatum HOM05D001997 ORTHO05D005560 2.2e-29 132.5 100 69.0
C04p70600 Brassica napus HOM05D001997 ORTHO05D005560 2.9e-29 132.1 89 75.3
TAR633G1661 Trochodendron aralioides HOM05D001997 ORTHO05D005560 1.1e-25 120.2 89 76.4
Mapoly0092s0041 Marchantia polymorpha HOM05D001997 ORTHO05D005560 1.9e-25 119.4 110 57.3
Pp3c22_3390 Physcomitrium patens HOM05D001997 ORTHO05D005560 2.2e-24 115.9 113 54.9
arahy.Tifrunner.gnm1.ann1.B0USY3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.4e-23 113.2 86 73.3
MSTRG.24567 Avicennia marina HOM05D001997 ORTHO05D005560 1.5e-22 109.8 69 78.3
BcaC02g07159 Brassica carinata HOM05D001997 ORTHO05D005560 1.5e-22 109.8 76 73.7
BolC4t28562H Brassica oleracea HOM05D001997 ORTHO05D005560 1.5e-22 109.8 76 73.7
Sc18g0007150 Simmondsia chinensis HOM05D001997 ORTHO05D005560 4.5e-22 108.2 67 79.1
CDE07G0374 Ceratophyllum demersum HOM05D001997 ORTHO05D005560 1.0e-21 107.1 63 79.4
Hund12390 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.0e-21 107.1 65 83.1
Oeu007674.1 Olea europaea HOM05D001997 ORTHO05D005560 1.3e-21 106.7 68 76.5
arahy.Tifrunner.gnm1.ann1.9S24RV Arachis hypogaea HOM05D001997 ORTHO05D005560 4.2e-20 101.7 69 75.4
CBR_g30248 Chara braunii HOM05D001997 ORTHO05D005560 4.6e-19 98.2 97 51.5
Cc10_g09000 Coffea canephora HOM05D001997 ORTHO05D005560 9.7e-17 90.5 56 80.4
arahy.Tifrunner.gnm1.ann1.IP5VZQ Arachis hypogaea HOM05D001997 ORTHO05D005560 2.2e-16 89.4 74 66.2
Psat6g024000 Pisum sativum HOM05D001997 ORTHO05D005560 6.3e-16 87.8 117 52.1
arahy.Tifrunner.gnm1.ann1.TRD1UF Arachis hypogaea HOM05D001997 ORTHO05D005560 4.1e-15 85.1 72 65.3
CARHR119270 Cardamine hirsuta HOM05D001997 ORTHO05D005560 4.1e-15 85.1 56 76.8
arahy.Tifrunner.gnm1.ann1.F176HW Arachis hypogaea HOM05D001997 ORTHO05D005560 9.1e-15 84.0 85 57.6
arahy.Tifrunner.gnm1.ann1.E4AJF3 Arachis hypogaea HOM05D001997 ORTHO05D005560 1.0e-13 80.5 67 67.2
Cre01.g031200 Chlamydomonas reinhardtii HOM05D001997 ORTHO05D005560 1.4e-12 76.6 102 45.1
AagrBONN_evm.TU.Sc2ySwM_228.2619 Anthoceros agrestis HOM05D001997 ORTHO05D005560 1.9e-12 76.3 85 48.2
MCO03G443 Micromonas commoda HOM05D001997 ORTHO05D005560 1.2e-11 73.6 113 39.8
Hund03190 Selenicereus undatus HOM05D000031 ORTHO05D000030 4.7e-11 71.6 60 58.3
arahy.Tifrunner.gnm1.ann1.FLH3LF Arachis hypogaea HOM05D001997 ORTHO05D005560 2.3e-10 69.3 87 51.7
CAN.G136.16 Capsicum annuum HOM05D001997 ORTHO05D005560 3.9e-10 68.6 53 64.2
Glyma.10G156400 Glycine max HOM05D001997 ORTHO05D005560 7.4e-09 64.3 50 72.0
EL10Ac7g17594 Beta vulgaris HOM05D001714 ORTHO05D001932 1.7e-08 63.2 54 64.8
PRCOL_00005629 Prasinoderma coloniale HOM05D001997 ORTHO05D005560 1.7e-08 63.2 122 35.2
EL10Ac1g01241 Beta vulgaris HOM05D001714 ORTHO05D005560 2.8e-08 62.4 51 68.6
EL10Ac5g10857 Beta vulgaris HOM05D001714 ORTHO05D001932 4.8e-08 61.6 54 70.4
arahy.Tifrunner.gnm1.ann1.XW4Y8U Arachis hypogaea HOM05D001997 ORTHO05D005560 8.2e-08 60.8 77 48.1
Hund12391 Selenicereus undatus HOM05D001997 ORTHO05D005560 1.8e-07 59.7 36 83.3
arahy.Tifrunner.gnm1.ann1.PZN0G5 Arachis hypogaea HOM05D001997 ORTHO05D005560 5.9e-06 54.7 38 71.1


User provided reference genes

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